MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	B6Ng01-061A19
Chromosome	1 (Build37)
Map Location	4,524,565 - 4,593,289
singlet/doublet	doublet
Overlap gene	LOC664838, LOC664853
Upstream gene	Xkr4, LOC619785, Rp1h, Sox17, LOC664830
Downstream gene	LOC619596, EG619980, LOC100039121, LOC620009, Mrpl15, Lypla1, Tcea1, LOC619829, Rgs20, Atp6v1h, EG636659, Oprk1
Link	Open Mouse BAC browser

Click to get alignment info.

name	Xkr4 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:497097 MGI:3528744
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC619785 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:619785
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 Proteins pseudo : _no_value

name	Rp1h (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:19888 MGI:1341105
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Sox17 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:20671 MGI:107543
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC664830 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:664830
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 ESTs, 4 Proteins pseudo : _no_value

name	LOC664838 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:664838
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 Proteins pseudo : _no_value

name	LOC664853 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:664853
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 6 Proteins pseudo : _no_value

name	LOC619596 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:619596
definition	note : glioma tumor suppressor candidate region gene 2 pseudogene pseudo : _no_value

name	EG619980 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:619980 MGI:3644547
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 2 Proteins pseudo : _no_value

name	LOC100039121 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100039121
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 Proteins pseudo : _no_value

name	LOC620009 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:620009
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 11 mRNAs, 379 ESTs, 8 Proteins pseudo : _no_value

name	Mrpl15 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:27395 MGI:1351639
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Lypla1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:18777 MGI:1344588
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Tcea1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:21399 MGI:1196624
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC619829 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:619829
definition	note : high mobility group box 3 pseudogene pseudo : _no_value

name	Rgs20 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:58175 MGI:1929866
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Atp6v1h (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:108664 MGI:1914864
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	EG636659 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:636659 MGI:3644877
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 13 Proteins pseudo : _no_value

name	Oprk1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:18387 MGI:97439
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Xkr4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:59858538 GeneID:497097 MGI:3528744
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : X Kell blood group precursor related family member 4 transcript_id : NM_001011874.1

name	Rp1h (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:33468922 GeneID:19888 MGI:1341105
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : retinitis pigmentosa 1 homolog (human) transcript_id : NM_011283.1

name	Sox17 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802575 GeneID:20671 MGI:107543
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : SRY-box containing gene 17 transcript_id : NM_011441.3

name	Mrpl15 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:34328269 GeneID:27395 MGI:1351639
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : mitochondrial ribosomal protein L15 transcript_id : NM_025300.2

name	Lypla1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:31543132 GeneID:18777 MGI:1344588
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : lysophospholipase 1 transcript_id : NM_008866.2

name	Tcea1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:40254396 GeneID:21399 MGI:1196624
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : transcription elongation factor A (SII) 1 transcript_id : NM_011541.3

name	Rgs20 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142372967 GeneID:58175 MGI:1929866
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : regulator of G-protein signaling 20 transcript_id : NM_021374.3

name	Atp6v1h (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142369636 GeneID:108664 MGI:1914864
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ATPase, H+ transporting, lysosomal V1 subunit H transcript_id : NM_133826.3

name	Oprk1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:24111247 GeneID:18387 MGI:97439
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : opioid receptor, kappa 1 transcript_id : NM_011011.1

name	Xkr4 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:59858539 CCDS:CCDS14803.1 GeneID:497097 MGI:3528744
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] codon_start : 1 product : XK-related protein 4 protein_id : NP_001011874.1

name	Rp1h (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:33468923 CCDS:CCDS14804.1 GeneID:19888 MGI:1341105
definition	GO_component : GO:0005929 - cilium [Evidence IDA]; GO:0005625 - soluble fraction [Evidence IDA] GO_function : GO:0004872 - receptor activity [Evidence IEA] GO_process : GO:0007242 - intracellular signaling cascade [Evidence IEA]; GO:0050896 - response to stimulus [Evidence IEA]; GO:0007601 - visual perception [Evidence IEA] codon_start : 1 note : oxygen-regulated protein 1 product : retinitis pigmentosa 1 homolog protein_id : NP_035413.1

name	Sox17 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6755604 CCDS:CCDS14805.1 GeneID:20671 MGI:107543
definition	GO_component : GO:0005634 - nucleus [Evidence IEA]; GO:0005667 - transcription factor complex [Evidence IEA] GO_function : GO:0003677 - DNA binding [Evidence IDA]; GO:0003700 - transcription factor activity [Evidence IEA] GO_process : GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 product : SRY-box 17 protein_id : NP_035571.1

name	Mrpl15 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:33468983 GeneID:27395 MGI:1351639
definition	GO_component : GO:0005762 - mitochondrial large ribosomal subunit [Evidence IEA] [Evidence ISS]; GO:0005739 - mitochondrion [Evidence IDA] GO_function : GO:0003735 - structural constituent of ribosome [Evidence ISS] [Evidence IEA] GO_process : GO:0000002 - mitochondrial genome maintenance [Evidence TAS]; GO:0006412 - protein biosynthesis [Evidence ISS] codon_start : 1 note : ribosomal protein, mitochondrial, L7 product : mitochondrial ribosomal protein L15 protein_id : NP_079576.1

name	Lypla1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6678760 CCDS:CCDS14806.1 GeneID:18777 MGI:1344588
definition	GO_component : GO:0005739 - mitochondrion [Evidence IDA] GO_function : GO:0016787 - hydrolase activity [Evidence IEA] GO_process : GO:0006631 - fatty acid metabolism [Evidence IEA]; GO:0006629 - lipid metabolism [Evidence IEA] codon_start : 1 note : phospholipase 1a; lysophopholipase 1 product : lysophospholipase 1 protein_id : NP_032892.1

name	Tcea1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6755728 GeneID:21399 MGI:1196624
definition	GO_component : GO:0005654 - nucleoplasm [Evidence IDA]; GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0003702 - RNA polymerase II transcription factor activity [Evidence IEA]; GO:0030528 - transcription regulator activity [Evidence IEA]; GO:0003746 - translation elongation factor activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0006952 - defense response [Evidence IEA]; GO:0030218 - erythrocyte differentiation [Evidence IMP]; GO:0045944 - positive regulation of transcription from RNA polymerase II promoter [Evidence IDA]; GO:0045893 - positive regulation of transcription, DNA-dependent [Evidence IDA]; GO:0045449 - regulation of transcription [Evidence IEA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006354 - RNA elongation [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 product : transcription elongation factor A (SII) 1 protein_id : NP_035671.1

name	Rgs20 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:110625669 CCDS:CCDS14807.1 GeneID:58175 MGI:1929866
definition	GO_component : GO:0005794 - Golgi apparatus [Evidence TAS]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0005096 - GTPase activator activity [Evidence TAS]; GO:0004871 - signal transducer activity [Evidence IEA] GO_process : GO:0007186 - G-protein coupled receptor protein signaling pathway [Evidence TAS]; GO:0009968 - negative regulation of signal transduction [Evidence IEA] codon_start : 1 note : regulator of G-protein signaling Z1 product : regulator of G-protein signaling 20 protein_id : NP_067349.2

name	Atp6v1h (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31981588 CCDS:CCDS14808.1 GeneID:108664 MGI:1914864
definition	GO_component : GO:0000221 - hydrogen-transporting ATPase V1 domain [Evidence IEA]; GO:0000300 - peripheral to membrane of membrane fraction [Evidence IEA] GO_function : GO:0001671 - ATPase stimulator activity [Evidence IEA]; GO:0005488 - binding [Evidence IEA]; GO:0015078 - hydrogen ion transporter activity [Evidence IEA]; GO:0046933 - hydrogen-transporting ATP synthase activity, rotational mechanism [Evidence IEA]; GO:0046961 - hydrogen-transporting ATPase activity, rotational mechanism [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA] GO_process : GO:0006754 - ATP biosynthesis [Evidence IEA]; GO:0015986 - ATP synthesis coupled proton transport [Evidence IEA]; GO:0006811 - ion transport [Evidence IEA]; GO:0015992 - proton transport [Evidence IEA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 note : vacuolar ATP synthase subunit H; vacuolar proton pump H subunit; V-ATPase H subunit; vacuolar ATPase subunit H; ATPase, H+ transporting, lysosomal 50/57kDa, V1 subunit H product : ATPase, H+ transporting, lysosomal, V1 subunit H protein_id : NP_598587.2

name	Oprk1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:24111248 CCDS:CCDS14809.1 GeneID:18387 MGI:97439
definition	GO_component : GO:0005887 - integral to plasma membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0004930 - G-protein coupled receptor activity [Evidence IEA]; GO:0004987 - kappa-opioid receptor activity [Evidence TAS]; GO:0004872 - receptor activity [Evidence IEA]; GO:0001584 - rhodopsin-like receptor activity [Evidence IEA]; GO:0004871 - signal transducer activity [Evidence IEA] GO_process : GO:0007186 - G-protein coupled receptor protein signaling pathway [Evidence IEA]; GO:0007165 - signal transduction [Evidence IEA] codon_start : 1 note : opioid receptor, kappa 2 product : opioid receptor, kappa 1 protein_id : NP_035141.1

name	LOC619785 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:619785
definition	number : 5 pseudo : _no_value

name	LOC619785 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:619785
definition	number : 4 pseudo : _no_value

name	LOC619785 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:619785
definition	number : 3 pseudo : _no_value

name	LOC619785 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:619785
definition	number : 2 pseudo : _no_value

name	LOC619785 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:619785
definition	number : 1 pseudo : _no_value

name	LOC664838 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:664838
definition	number : 2 pseudo : _no_value

name	LOC664838 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:664838
definition	number : 1 pseudo : _no_value

name	LOC664853 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:664853
definition	number : 1 pseudo : _no_value

name	LOC664853 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:664853
definition	number : 2 pseudo : _no_value

name	LOC100039121 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100039121
definition	number : 4 pseudo : _no_value

name	LOC100039121 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100039121
definition	number : 3 pseudo : _no_value

name	LOC100039121 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100039121
definition	number : 2 pseudo : _no_value

name	LOC100039121 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100039121
definition	number : 1 pseudo : _no_value

name	EG636659 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:636659
definition	number : 2 pseudo : _no_value

name	EG636659 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:636659
definition	number : 1 pseudo : _no_value

name	(CDS detail)
type	STS
link
xref	UniSTS:128840
definition	standard_name : D1Mit475

name	(CDS detail)
type	STS
link
xref	UniSTS:125374
definition	standard_name : MHAa84a2.seq

name	(CDS detail)
type	STS
link
xref	UniSTS:128586
definition	standard_name : D1Mit242.1

name	(CDS detail)
type	STS
link
xref	UniSTS:128585
definition	standard_name : D1Mit242

name	(CDS detail)
type	STS
link
xref	UniSTS:158773
definition	standard_name : 36.MMHAP82FRD12.seq

name	(CDS detail)
type	STS
link
xref	UniSTS:270413
definition	standard_name : PMC122834P1

name	(CDS detail)
type	STS
link
xref	UniSTS:471102
definition	standard_name : Sox17

name	(CDS detail)
type	STS
link
xref	UniSTS:162931
definition	standard_name : RH126223

name	(CDS detail)
type	STS
link
xref	UniSTS:128794
definition	standard_name : D1Mit427

name	(CDS detail)
type	STS
link
xref	UniSTS:209785
definition	standard_name : RH127073

name	(CDS detail)
type	STS
link
xref	UniSTS:234064
definition

name	(CDS detail)
type	STS
link
xref	UniSTS:207125
definition	standard_name : RH127028

name	(CDS detail)
type	STS
link
xref	UniSTS:207124
definition	standard_name : BB280152

name	(CDS detail)
type	STS
link
xref	UniSTS:163048
definition	standard_name : RH126340

name	(CDS detail)
type	STS
link
xref	UniSTS:178356
definition	standard_name : Tcea1

name	(CDS detail)
type	STS
link
xref	UniSTS:207123
definition	standard_name : AU022349

name	(CDS detail)
type	STS
link
xref	UniSTS:128839
definition	standard_name : D1Mit474

name	(CDS detail)
type	STS
link
xref	UniSTS:144086
definition	standard_name : Oprk1

name	LOC664830 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149233584 GeneID:664830
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 ESTs, 4 Proteins product : hypothetical LOC664830 pseudo : _no_value transcript_id : XR_030593.1

name	EG619980 (CDS detail)
type	misc_RNA
link	vega ensembl MGI NCBI
xref	GI:149233585 GeneID:619980 MGI:3644547
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 2 Proteins product : predicted gene, EG619980 pseudo : _no_value transcript_id : XR_030641.1

name	LOC620009 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149233586 GeneID:620009
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 11 mRNAs, 379 ESTs, 8 Proteins product : similar to pyruvate dehydrogenase (lipoamide) beta pseudo : _no_value transcript_id : XR_030608.1

clone name	MSMg01-408D20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-367K10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-129G01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-441I13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-108G09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-300N22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-447I19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-447I21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-548C10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-372A13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-410I22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-521O16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-441G16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-346G11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-279P11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-113M15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-373J17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-147J24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-280A06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-541P22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-179O14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-300P10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-316K14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-504B22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-383D06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-410N04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-466N11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-371O09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-488G14
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-128C19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-543G13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-359D23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-078G12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-485J06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-195E10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-275K08
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-410J16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-394C07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-261C06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-430N18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-318H07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-543A01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-153J17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-125D20
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-129E03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-186M15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-541K19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-336F22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-482E07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-472J20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-391C18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-498A12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-062E22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-114J02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-323G04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-358I13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-049P22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-260O07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-174K04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-324C12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-285O20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-226G09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-267E18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-236B20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-045L11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-295L08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-210C19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-310M05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-133A07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-257L11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-134F22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-281K07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-241N18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-341O04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-086L24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-008I17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-041G20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-076B05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-087G15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-042E10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-097F02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-056M07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-246O12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-268H03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-042F17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-349F14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-117E23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-139O18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-114F10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-015I04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-197A09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-086I19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-254C24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-227N21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-229M06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-263I11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-061D04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-293G11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-138K13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-211A18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-203B20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-194K14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-231L24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-348P17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-053A19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-046B14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-100B13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-061A19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-180J16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-298N10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-058E09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-046P12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-153L05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-161F08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-327M18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-002A15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-034O13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-240I24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-277B20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-020I12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-199K06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-178K09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-299L20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-147N09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-228H22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-106D21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-194A21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-020A15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-047H08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-119E19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-089A09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-336B19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-349N15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-261B22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-202E22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-336A02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-198E09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-029E16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-056L09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-052K15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-210K13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-041N06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-239A23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-327C03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-018F20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-094L01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-006N18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-006N16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-290N05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-039C22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-016A07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-286O08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-038M20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-286I01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-331L09
singlet/doublet	singlet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	B6Ng01-061A19.b	B6Ng01-061A19.g
ACC	DH881843	DH881844
length	1,160	770
definition	DH881843\|Mus musculus domesticus DNA, BAC clone: B6Ng01-061A19, 5' end.	DH881844\|Mus musculus domesticus DNA, BAC clone: B6Ng01-061A19, 3' end.
singlet/doublet	doublet	doublet
BLAST hit	unique	unique
Map location.	(4,524,565 - 4,525,760)	(4,592,523 - 4,593,289)
sequence	gaattctctttgaatttggaggttttttgtttttttgtttgttttttttc cacattgattctaaggttgaacttctctcagtattcagggggctggaata ctaatggaattactataggagtaacttcttcctcttgtttttaggtagca gaggtgtcttgtacttgagaaattctagagttacatgagctgactcctta cagtacaaaaaataataatgattgttattgtttaaaaaatattgtatagt taattatttaatttaaataattaaacaataatggtaatataatgataagc attattaaacttgataaagaactttatttgttctggagagtcacctgtgt gcttcagaacttctggaactgcttcctggaaccttgagcacactacagca cactctcttgtccagaggcctgtactctcccagggtgatgatgtagccag tctgtacatccctgaaacaagggatcaggacatgttcttgtggtacttct gaaattgattggattgcatttttggacctataggaaatgatctaaacaga tggcaatagtcctgtatcttcatcttggtcacaacaccagaaagaatctg accttggatagagacattatcggtgaaggggcatttcttgcccacatagg agccctcagtgaccttcttggacatcatgaagcccactatccttgtagta cctatggagcttctcctttgtcagtttctcctggtagaacccattttctt ttgctttgaaagatggtgaactgcttttgggaagcatacttggtctgaat gtccaccggcttcctggcaacccgagagaaaatgtattattattttttaa tctcaagaatttggtttctttatgaactgaaagtgaaatttgatggtatc tgagcgaactgtgacctggctaaatctgaaaaccagtagcctctagaaag agctcatgaaaagacactatgtttctttgagagctatacttcatcagaca tatcagtgccaaaaaatgtgtagatctttctggatagtacacatatatgc tccatgtgccagcttgagcaatgctatctctatcatatatatttccatgc gaaggcgaaagcaacctgccttagccacactgttgtctagtcccttggga agagcaggca	gaattcataatatgaagtaaaagaaacagccagggctggtgtggtcactc agtcagtaaagtgcctgttataaaaacactgagtatgagagtgttcattt gtcatccctgaggaggggaggggaggacaagagaggatgctctagcctca ctagccagccagtctaactaattgtctagctcatgccaatgagagatccc atctcaaagaaggtgcattacattcctaaggatgatccccaattatcctt ccacatgcacatgtgccacccaccacacacacctgcatcctgtatgtaca cattcatgtgcacacacacatgcagagagagagagagagagagagagaga gagagagagagagagagagagagagagagaggagatatgaaagaaatatg tctcagcactgagcataatattaaaagatttgccttagagagctgaagat aaacgtgaccttgcacatcatgttgccacagcgaagtggctatttaggaa aagtgaagcttggttgccatacaaaaggcctccccaattgtgtattgctt atttcctcacattgtggcctccattggcacatgtggggtgagtcagacct gcattgctgattccagggtctagataaggcatctggaaatcgctgtgagc ccaaagaaggggtgaggcaacaactgcctatttttatcaggatttccagg atgactgcatggccacaccccttttggctctgtagtactgaaagggaagg ggaggctggagggttggggg
quality values	Open. Hide. 42 37 24 37 50 61 61 53 61 50 55 55 55 55 47 61 55 61 61 61 61 49 41 61 61 13 12 11 13 11 13 19 59 36 28 28 32 41 59 61 59 61 61 61 61 59 61 61 61 61 59 38 61 61 61 61 61 59 61 61 61 61 61 61 59 61 59 59 61 49 39 52 41 30 44 49 52 61 61 59 59 61 61 61 61 61 59 61 59 55 55 61 61 61 61 61 61 59 61 61 61 61 61 61 61 61 61 59 59 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 55 59 59 61 61 61 61 61 61 61 59 59 55 59 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 59 61 61 59 61 61 61 61 61 61 61 59 61 61 61 61 61 61 59 59 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 59 55 59 61 61 59 59 59 61 61 61 61 61 61 61 61 61 59 61 61 59 59 59 61 61 61 61 61 61 61 61 61 61 61 59 61 61 61 61 61 61 61 59 61 61 61 61 61 61 61 61 61 61 59 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 59 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 59 59 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 55 55 61 61 61 61 61 61 61 59 44 55 59 61 59 61 61 61 61 61 61 61 61 61 61 61 61 59 59 61 61 61 61 61 61 61 61 59 59 61 61 61 61 61 61 61 61 59 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 59 61 61 61 61 61 61 61 61 59 61 59 59 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 55 55 61 61 55 55 61 55 61 61 55 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 55 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 55 50 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 55 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 53 61 61 61 61 53 61 61 61 61 50 50 61 61 61 61 61 61 61 61 61 53 61 50 61 61 61 61 61 61 61 61 53 61 53 61 61 53 61 61 52 45 61 61 61 61 61 47 47 61 61 61 61 47 61 61 61 61 61 53 50 61 61 61 61 61 52 61 53 57 57 57 53 53 47 52 57 57 52 43 57 57 57 47 53 53 57 57 53 53 53 57 47 37 42 43 53 52 53 53 53 57 57 47 47 47 47 53 53 53 53 53 53 47 47 47 53 53 52 47 53 53 53 53 50 42 53 53 50 53 57 57 53 45 47 47 26 45 52 52 53 53 53 43 46 53 57 50 53 45 52 52 34 47 52 53 53 53 53 53 42 53 53 52 52 50 50 53 53 46 46 57 45 45 42 42 45 57 46 45 50 47 47 47 53 53 42 50 38 43 47 21 38 37 37 39 57 38 46 37 33 57 53 47 38 36 52 53 52 40 52 57 46 37 38 29 50 40 31 52 57 36 33 40 53 36 44 57 57 43 52 57 38 33 38 28 44 35 44 35 44 36 36 40 53 30 44 44 44 41 40 37 44 28 30 41 27 45 35 40 40 35 43 41 28 39 37 33 37 33 30 35 31 36 30 30 33 25 39 30 46 45 45 33 27 48 40 20 29 32 40 29 32 30 22 44 46 51 44 30 24 32 29 29 29 28 21 29 29 46 25 29 45 30 29 29 29 51 16 29 28 51 34 24 29 23 28 33 26 29 29 29 39 29 27 29 32 29 51 28 28 51 33 18 32 25 30 41 20 28 29 28 31 29 38 20 33 17 29 26 25 29 29 28 28 28 16 19 29 29 26 22 33 43 46 39 19 24 20 28 36 39 30 30 10 14 17 27 24 29 29 39 24 28 24 17 18 23 31 51 30 21 33 14 16 29 25 26 28 24 29 46 51 22 21 26 14 13 19 25 30 22 29 22 44 17 25 14 44 19 11 28 14 31 17 19 9 36 16 18 11 20 24 34 15 32 17 9 19 33 19 13 22 19 23 14 6 6 5 9 11 10 12 29 35 35 39 23 13 22 13 17 17 9 5 4 8 15 17 42 17 13 18 22 6 29 8 12 13 20 6 4 5 12 5 4 6 6 10 19 29 9 26 10 23 9 22 16 11 19 11 11 29 17 20 7 15 19 21 23 10 14 20 15 25 11 23 14 3 5 5 25 21 8 3 7 11 25 10 6 10 4 5 5 26 17 10 17 7 26 11 6 3 4 27 5 20 3 2 14 13 14 7 18 12 15 5 6 5 4 13 12 6 6 20 7 17 5 6 6 4 12 4 5 6 10 10 13 5 5 17 7 10 27 16 4 2 3 16 5 3 9 13 6 21 3 7 4 7 9 7 12	Open. Hide. 59 59 39 59 59 59 14 20 18 12 18 13 22 22 26 24 27 59 52 52 61 61 61 61 61 55 61 59 61 61 59 59 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 59 59 55 43 36 49 44 30 28 30 52 59 61 61 59 61 61 59 59 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 59 61 61 59 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 59 59 55 61 61 61 61 61 61 61 61 61 61 55 59 61 59 61 61 61 61 61 61 61 61 61 59 59 61 61 61 61 61 61 61 61 59 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 59 59 61 61 61 59 59 61 61 61 61 61 61 61 61 61 61 61 61 59 61 59 55 55 59 61 61 61 61 61 61 61 59 61 61 61 61 61 61 61 61 61 59 61 61 59 61 61 61 61 61 59 61 59 59 59 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 59 59 61 61 61 61 61 61 61 61 61 61 61 59 61 61 59 61 61 61 61 61 61 61 61 61 59 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 59 61 61 61 61 61 61 61 59 59 55 59 59 59 61 61 61 61 61 61 61 61 59 55 61 61 61 59 61 61 59 61 61 61 61 61 61 61 59 61 61 59 59 59 59 59 59 61 59 59 59 36 59 52 59 59 61 61 59 61 61 61 61 61 61 59 59 61 61 61 61 61 61 61 61 61 61 61 59 59 61 59 61 59 61 59 61 55 55 55 55 61 55 52 61 55 52 55 55 55 55 55 55 55 55 55 55 55 61 55 55 61 55 61 61 61 61 61 61 52 55 55 55 52 55 52 55 55 50 61 61 55 61 61 61 61 61 61 61 61 61 61 55 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 55 61 55 55 50 55 55 55 43 55 61 61 55 61 61 61 53 53 50 50 53 47 53 50 53 53 45 53 47 52 47 61 61 50 61 52 53 47 61 53 53 61 61 61 24 50 50 52 52 61 47 61 47 50 42 38 45 33 35 39 47 53 50 38 50 53 47 53 61 61 61 61 50 61 42 53 61 47 46 47 50 34 42 39 50 53 47 47 43 50 46 47 31 42 43 53 39 39 39 47 39 61 57 57 47 38 52 53 50 53 34 53 57 24 47 19 30 38 38 45 50 39 47 47 43 45 35 21 27 45 38 53 53 37 32 37 32 32 26 32 45 32 47 47 19 53 42 24 28 53 50 23 37 27 28 32 45 20 38 47 50 52 28 43 50 38 18 50 45 50 45 34 38 23 17 5 10 38 52 52 38 42 43 45 32 20 23 38 38 34 24 36 45 45 28 39 37 27 29 37 19 37 33 47 47 50 53 30 30 45 8 19 34 27 33 36 53 43 19 28 20 45 37 38 40 25 17 28 8 9 23 17 38 33 17 38 34 12 22 22 34 20 19 13 17 37 24 32 29 13 21 10 32 30 32 32

Alignment Information

BAC End 1

BAC End 2

seq1: chr1_4524565_4525760
seq2: B6Ng01-061A19.b_48_1207

seq1  GAATTCTCTTTGAATTTGGAGGTTTTTTGTTTTTTTGTTTGTTTTTTTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTTTGAATTTGGAGGTTTTTTGTTTTTTTGTTTGTTTTTTTTC  50

seq1  CACATTGATTCTAAGGTTGAACTTCTCTCAGTATTCAGGGGGCTGGAATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATTGATTCTAAGGTTGAACTTCTCTCAGTATTCAGGGGGCTGGAATA  100

seq1  CTAATGGAATTACTATAGGAGTAACTTCTTCCTCTTGTTTTTAGGTAGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATGGAATTACTATAGGAGTAACTTCTTCCTCTTGTTTTTAGGTAGCA  150

seq1  GAGGTGTCTTGTACTTGAGAAATTCTAGAGTTACATGAGCTGACTCCTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTGTCTTGTACTTGAGAAATTCTAGAGTTACATGAGCTGACTCCTTA  200

seq1  CAGTACAAAAAATAATAATGATTGTTATTGTTTAAAAAATATTGTATAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTACAAAAAATAATAATGATTGTTATTGTTTAAAAAATATTGTATAGT  250

seq1  TAATTATTTAATTTAAATAATTAAACAATAATGGTAATATAATGATAAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTATTTAATTTAAATAATTAAACAATAATGGTAATATAATGATAAGC  300

seq1  ATTATTAAACTTGATAAAGAACTTTATTTGTTCTGGAGAGTCACCTGTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTAAACTTGATAAAGAACTTTATTTGTTCTGGAGAGTCACCTGTGT  350

seq1  GCTTCAGAACTTCTGGAACTGCTTCCTGGAACCTTGAGCACACTACAGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCAGAACTTCTGGAACTGCTTCCTGGAACCTTGAGCACACTACAGCA  400

seq1  CACTCTCTTGTCCAGAGGCCTGTACTCTCCCAGGGTGATGATGTAGCCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCTCTTGTCCAGAGGCCTGTACTCTCCCAGGGTGATGATGTAGCCAG  450

seq1  TCTGTACATCCCTGAAACAAGGGATCAGGACATGTTCTTGTGGTACTTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTACATCCCTGAAACAAGGGATCAGGACATGTTCTTGTGGTACTTCT  500

seq1  GAAATTGATTGGATTGCATTTTTGGACCTATAGGAAATGATCTAAACAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTGATTGGATTGCATTTTTGGACCTATAGGAAATGATCTAAACAGA  550

seq1  TGGCAATAGTCCTGTATCTTCATCTTGGTCACAACACCAGAAAGAATCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAATAGTCCTGTATCTTCATCTTGGTCACAACACCAGAAAGAATCTG  600

seq1  ACCTTGGATAGAGACATTATCGGTGAAGGGGCATTTCTTGCCCACATAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTGGATAGAGACATTATCGGTGAAGGGGCATTTCTTGCCCACATAGG  650

seq1  AGCCCTCAGTGACCTTCTTGGACATCATGAAGCCCACTATCCTTGTAGTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCTCAGTGACCTTCTTGGACATCATGAAGCCCACTATCCTTGTAGTA  700

seq1  CCTATGGAGCTTCTCCTTTGTCAGTTTCTCCTGGTAGAACCCATTTTCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATGGAGCTTCTCCTTTGTCAGTTTCTCCTGGTAGAACCCATTTTCTT  750

seq1  TTGCTTTGAAAGATGGTGAACTGCTTTTGGGAAGCATACTTGGTCTGAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTTGAAAGATGGTGAACTGCTTTTGGGAAGCATACTTGGTCTGAAT  800

seq1  GTCCACCGGCTTCCTGGCAACCCGAGAGAAAATGTATTATTATTTTTTAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCACCGGCTTCCTGGCAACCCGAGAGAAAATGTATTATTATTTTTTAA  850

seq1  TCTCAAGAATTTGGTTTCTTTATGAACTGAAAGTGAAATTTGATGGTATC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAAGAATTTGGTTTCTTTATGAACTGAAAGTGAAATTTGATGGTATC  900

seq1  TGAGCGAACTGTGACCTGGCTAAAATCTGAAAAACCAGTAGCCTCTAGAA  950
      ||||||||||||||||||||| ||||||| ||||||||||||||||||||
seq2  TGAGCGAACTGTGACCTGGCT-AAATCTG-AAAACCAGTAGCCTCTAGAA  948

seq1  AGAGCTCATGAAAAGACACTATGTTTCTTTGAGAGCTAATAACTTCATCA  1000
      ||||||||||||||||||||||||||||||||||||||   |||||||||
seq2  AGAGCTCATGAAAAGACACTATGTTTCTTTGAGAGCTA--TACTTCATCA  996

seq1  GACATATCAGGTGCCAAAAAAATGTGTAAGGATCTTTCTGGAATAGTTAA  1050
      ||||||||| ||||| ||||||||||||  ||||||||||| |||||  |
seq2  GACATATCA-GTGCC-AAAAAATGTGTA--GATCTTTCTGG-ATAGT--A  1039

seq1  CACATATATGCTTCCCATGTGCCAAGCCTTGAGGCAAATGCTTAATCTCC  1100
      ||||||||||||  ||||||||||   ||||||   ||||||  ||||| 
seq2  CACATATATGCT--CCATGTGCCA--GCTTGAG--CAATGCT--ATCTC-  1080

seq1  TTAATCATTATAATATTTCCATTGCAGAAGGCAGAAAAGCCAAACACTGC  1150
         |||| ||| ||||||||| ||| ||||||   |||||  ||| ||| 
seq2  --TATCA-TAT-ATATTTCCA-TGC-GAAGGC--GAAAGC--AAC-CTG-  1118

seq1  CCTAAGCCACACTGTTGTCTAAGTCCCCACTGGAAGAAGCCAGGCA  1196
      ||| |||||||||||||||| ||| |||   ||||||   ||||||
seq2  CCTTAGCCACACTGTTGTCT-AGT-CCCTTGGGAAGA--GCAGGCA  1160

seq1: chr1_4592523_4593289
seq2: B6Ng01-061A19.g_70_839 (reverse)

seq1  CCCCCAACCCTCCAGCCTCCCCTTCCC-TTCAGTACTACAGAGCC-AAAG  48
      ||||||||||||||||||||||||||| ||||||||||||||||| ||||
seq2  CCCCCAACCCTCCAGCCTCCCCTTCCCTTTCAGTACTACAGAGCCAAAAG  50

seq1  GGGTGTGGCCATGCAGTCATCCTGGAAATCCTGAT-AAAATAGGCAGTTG  97
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  GGGTGTGGCCATGCAGTCATCCTGGAAATCCTGATAAAAATAGGCAGTTG  100

seq1  TTGCCTCACCCCTTCTTTGGGCTCACAGCGATTTCCAGATGCCTTATCTA  147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCTCACCCCTTCTTTGGGCTCACAGCGATTTCCAGATGCCTTATCTA  150

seq1  GACCCTGGAATCAGCAATGCAGGTCTGACTCACCCCACATGTGCCAATGG  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCTGGAATCAGCAATGCAGGTCTGACTCACCCCACATGTGCCAATGG  200

seq1  AGGCCACAATGTGAGGAAATAAGCAATACACAATTGGGGAGGCCTTTTGT  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCACAATGTGAGGAAATAAGCAATACACAATTGGGGAGGCCTTTTGT  250

seq1  ATGGCAACCAAGCTTCACTTTTCCTAAATAGCCACTTCGCTGTGGCAACA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCAACCAAGCTTCACTTTTCCTAAATAGCCACTTCGCTGTGGCAACA  300

seq1  TGATGTGCAAGGTCACGTTTATCTTCAGCTCTCTAAGGCAAATCTTTTAA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGTGCAAGGTCACGTTTATCTTCAGCTCTCTAAGGCAAATCTTTTAA  350

seq1  TATTATGCTCAGTGCTGAGACATATTTCTTTCATATCTCCTCTCTCTCTC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATGCTCAGTGCTGAGACATATTTCTTTCATATCTCCTCTCTCTCTC  400

seq1  TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGCA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGCA  450

seq1  TGTGTGTGTGCACATGAATGTGTACATACAGGATGCAGGTGTGTGTGGTG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGCACATGAATGTGTACATACAGGATGCAGGTGTGTGTGGTG  500

seq1  GGTGGCACATGTGCATGTGGAAGGATAATTGGGGATCATCCTTAGGAATG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGCACATGTGCATGTGGAAGGATAATTGGGGATCATCCTTAGGAATG  550

seq1  TAATGCACCTTCTTTGAGATGGGATCTCTCATTGGCATGAGCTAGACAAT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGCACCTTCTTTGAGATGGGATCTCTCATTGGCATGAGCTAGACAAT  600

seq1  TAGTTAGACTGGCTGGCTAGTGAGGCTAGAGCATCCTCTCTTGTCCTCCC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTAGACTGGCTGGCTAGTGAGGCTAGAGCATCCTCTCTTGTCCTCCC  650

seq1  CTCCCCTCCTCAGGGATGACAAATGAACACTCTCATACTCAGTGTTTTTA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCCTCCTCAGGGATGACAAATGAACACTCTCATACTCAGTGTTTTTA  700

seq1  TAACAGGCACTTTACTGACTGAGTGACCACACCAGCCCTGGCTGTTTCTT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAGGCACTTTACTGACTGAGTGACCACACCAGCCCTGGCTGTTTCTT  750

seq1  TTACTTCATATTATGAATTC  767
      ||||||||||||||||||||
seq2  TTACTTCATATTATGAATTC  770

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BAC

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Alignment Information