BAC Information

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BAC

Clone NameB6Ng01-061D24
Chromosome1 (Build37)
Map Location 27,075,901 - 27,076,930
singlet/doubletsinglet
Overlap genenone
Upstream gene4931408C20Rik
Downstream geneLOC677427, LOC100040952, EG433281
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-061D24.bB6Ng01-061D24.g
ACCDH881980DH881981
length1,2261,162
definitionDH881980|Mus musculus domesticus DNA, BAC clone: B6Ng01-061D24, 5' end.DH881981|Mus musculus domesticus DNA, BAC clone: B6Ng01-061D24, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcctgatctttccagaacttttatcctgaatgggtgttggatcttg
tcaaatgctttttctgcatctaacgagatgatcatgtggtttttgtcttt
gagtttgtttatataatggattacattgatggattttcgtatattaatcc
atccctgcatccatggaataaaacctacttggtcaggatggatgattgct
ttaatgtgttcttggatttggttagcgagaattttattgaggatttttgc
atctatgttcataagagaaattggtctgaagttctctatctttgttggat
ctttctgtggtttaggtatcagagtaatagtggcttcataaaatgagttg
ggtagaataccttctacttctatcttgtgaaaaagtttgtgcagaactgg
agttagatcttctttgaaggtctgatagaactctgcactaaacccgtctg
gtcctgggctttttttggctgggagactattaataactgcttctatttct
ttaggggatatgggactgtttagaaggtcaacttgatcctgattcaactt
tggtacctggtatctgtccagaaatttgtccatttcgtccaggttttcca
gttttgttgagtatagccttttgtagaaggatctgatggtgttttggatt
tcttcaggatctgttgttatgtctcccttttcatttctgattttgttaat
taggattttgtccctgtgccctttagtgagtctagctaagggtttatcta
tcttgttgattttctcaaagaaccaactcctcgtttggttaattctttga
atagttcttcttgtttccacttggttgatttcacccctgagtttgattat
ttcctgccgtctactcctcttgggtgaatttgcttccttatttctagagc
ttttagatgtgttgtcaagctgctagtatgtgctctctcccgttttttct
tgaggcactcatagctatgagtttccctctagaatgctttcattgtgtcc
caaaggtttgggtaggttgtggcttcattttcattaaacctctaaaaagc
ttaattctttcttaatccttcctggatcaagggatcaatgaaaaaaagtg
ttggtcagttccctgtgatagtggcctccgtgatctattggcatttaggc
caccttagtgcgatggggatctgagaagatcatgggacatttcaaatttg
aacgtctaagcgtgcaatcttggtac
gaattcaataaagagataaaatattaataaaacaaatttgaagttctggg
agtgagaatcaataaatcatagttctaggggaagtctcatcaacagagtg
gaacagtatagcttgaagagaaagcagagaaactggaaaaaataaaagaa
gaacaaagtggaaataaaggtaatattagtgggaattaaaacatacaagt
aaaactgaaataacaatttaacaaacagacattgaagaaagagaagaatt
taattcaaatggcatagaaagcattttaaagaatcagaaaacaaaatcct
ctagggttattaggagaagagataccaagccaaataaaggaagtttttag
gacaccaacagaaagaacctcctgttgtattatattaaagaactagagag
aacaaaggaagtctattgaaaggaacaagaaaaagttcctttcaatatat
atacatatatataaagtcagggttttcaatacatcagcaaactattcaac
tgaaactttcaaagccaggagggcatggacaaatatattttatgttttga
aagataactgccaatccggattactatatctagaaaagctatctgtcatg
attgaaggaataaaagcaaataagcacacaaacaaacaaacaaaaaccca
aactttttattatggagaaaaatcaagctaaaggattttatgatcaatta
ggtgtcattacagaaaattaatgtttccagatatggagaaaaaccaatcc
aacagtataatagtgcatcagtgaataactttttaccaagagaaaaccat
aacataattaacaaaatgagaataaaaatactctacaatgataactctca
ccaaggataatagccccaaagtgtaaattaaaatacacagtattaaatta
agttaacattaacaaaaaatatatacatatatataatttcttccaagatt
aaaatcttacacaaaaagacaggatggattacaggccccaatgaggagct
agaagaaaatactcaagggagctaaagggatctgtaaccctataggtgga
ccagcatatgactaacagtaaccccagagcttgtgttctctagctgcatt
gtatagaagtcgccatcattggaaaggagtatggtcttgcaactttatat
gcctgatacagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_27075901_27076930
seq2: B6Ng01-061D24.g_213_1227

seq1  GAAGAACAAAGTGGAAATAAAGGTAATATTAGTGGGAATTAAAACATACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAACAAAGTGGAAATAAAGGTAATATTAGTGGGAATTAAAACATACA  50

seq1  AGTAAAACTGAAATAACAATTTAACAAACAGACATTGAAGAAAGAGAAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAAACTGAAATAACAATTTAACAAACAGACATTGAAGAAAGAGAAGA  100

seq1  ATTTAATTCAAATGGCATAGAAAGCATTTTAAAGAATCAGAAAACAAAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAATTCAAATGGCATAGAAAGCATTTTAAAGAATCAGAAAACAAAAT  150

seq1  CCTCTAGGGTTATTAGGAGAAGAGATACCAAGCCAAATAAAGGAAGTTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTAGGGTTATTAGGAGAAGAGATACCAAGCCAAATAAAGGAAGTTTT  200

seq1  TAGGACACCAACAGAAAGAACCTCCTGTTGTATTATATTAAAGAACTAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGACACCAACAGAAAGAACCTCCTGTTGTATTATATTAAAGAACTAGA  250

seq1  GAGAACAAAGGAAGTCTATTGAAAGGAACAAGAAAAAGTTCCTTTCAATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAACAAAGGAAGTCTATTGAAAGGAACAAGAAAAAGTTCCTTTCAATA  300

seq1  TATATACATATATATAAAGTCAGGGTTTTCAATACATCAGCAAACTATTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATACATATATATAAAGTCAGGGTTTTCAATACATCAGCAAACTATTC  350

seq1  AACTGAAACTTTCAAAGCCAGGAGGGCATGGACAAATATATTTTATGTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGAAACTTTCAAAGCCAGGAGGGCATGGACAAATATATTTTATGTTT  400

seq1  TGAAAGATAACTGCCAATCCGGATTACTATATCTAGAAAAGCTATCTGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGATAACTGCCAATCCGGATTACTATATCTAGAAAAGCTATCTGTC  450

seq1  ATGATTGAAGGAATAAAAGCAAATAAGCACACAAACAAACAAACAAAAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATTGAAGGAATAAAAGCAAATAAGCACACAAACAAACAAACAAAAAC  500

seq1  CCAAACTTTTTATTATGGAGAAAAATCAAGCTAAAGGATTTTATGATCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAACTTTTTATTATGGAGAAAAATCAAGCTAAAGGATTTTATGATCAA  550

seq1  TTAGGTGTCATTACAGAAAATTAATGTTTCCAGATATGGAGAAAAACCAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGTGTCATTACAGAAAATTAATGTTTCCAGATATGGAGAAAAACCAA  600

seq1  TCCAACAGTATAATAGTGCATCAGTGAATAACTTTTTACCAAGAGAAAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAACAGTATAATAGTGCATCAGTGAATAACTTTTTACCAAGAGAAAAC  650

seq1  CATAACATAATTAACAAAATGAGAATAAAAATACTCTACAATGATAACTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAACATAATTAACAAAATGAGAATAAAAATACTCTACAATGATAACTC  700

seq1  TCACCAAGGATAATAGCCCCAAAGTGTAAATTAAAATACACAGTATTAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCAAGGATAATAGCCCCAAAGTGTAAATTAAAATACACAGTATTAAA  750

seq1  TTAAGTTAACATTAACAAAAAATATATACATATATATAATTTCTTCCAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGTTAACATTAACAAAAAATATATACATATATATAATTTCTTCCAAG  800

seq1  ATTAAAATCTTACCACAAAAAGACAGGATGGATTACAGGGCCCCCAATGG  850
      |||||||||||| ||||||||||||||||||||||||||  ||||||| |
seq2  ATTAAAATCTTA-CACAAAAAGACAGGATGGATTACAGG--CCCCAAT-G  846

seq1  AGGAGCTAG-AGAAAATAC-CCAGGGAGCTAAAGGGATCTGTAACCCTAT  898
      ||||||||| ||||||||| | ||||||||||||||||||||||||||||
seq2  AGGAGCTAGAAGAAAATACTCAAGGGAGCTAAAGGGATCTGTAACCCTAT  896

seq1  AGGTGGACCAGCAATATGAACTAACCAGTAACCCCCAGAGCTTGTG-TCT  947
      |||||||||||| ||||| ||||| |||||| |||||||||||||| |||
seq2  AGGTGGACCAGC-ATATG-ACTAA-CAGTAA-CCCCAGAGCTTGTGTTCT  942

seq1  CTAGCTGCATATGTATCAGAAGTCGGCCATCATTGGAAAGAGAGGCCCAT  997
      |||||||||| ||||| ||||||| ||||||||||||||| |||      
seq2  CTAGCTGCAT-TGTAT-AGAAGTC-GCCATCATTGGAAAG-GAG----TA  984

seq1  TGGTCTTGCAAACTTTATATGCCTCAGTACAGG  1030
      ||||||||| |||||||||||||| | ||||||
seq2  TGGTCTTGC-AACTTTATATGCCTGA-TACAGG  1015