BAC Information

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BAC

Clone NameB6Ng01-061E15
Chromosome1 (Build37)
Map Location 15,562,866 - 15,686,274
singlet/doubletdoublet
Overlap geneKcnb2
Upstream geneMsc, Smt3h2-ps4, EG665407, Trpa1, EG269105, LOC100039949, LOC100039959
Downstream genePpia-ps1_109.1, Terf1, Gm106, LOC665434, 4930444P10Rik, Rpl7, Rdh10, EG665282, Stau2, Ube2w, Tceb1, LOC665480, Tmem70, Ly96
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-061E15.bB6Ng01-061E15.g
ACCDH882007DH882008
length1,060991
definitionDH882007|Mus musculus domesticus DNA, BAC clone: B6Ng01-061E15, 5' end.DH882008|Mus musculus domesticus DNA, BAC clone: B6Ng01-061E15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(15,562,866 - 15,563,930)(15,685,282 - 15,686,274)
sequence
gaattcataagtcagattgatggcaaatctatggctagagctcatatgcc
attgctccatgctggtgctttccacaccaatcaacttctaacaggaagtt
atcccatccctttgatgaggactcatcagctcatcatttttgcctctgat
cctacttagaatgagtgtagcttcctattgacagctggaatagaccagga
actagtaagtactttgcccaaggacaagaaatcattacatgaaaagacta
aaactgaaatctagactgtggcgtttaagcaattttgattgtattttgta
ggaggtactggaaggcttgaccacatggtacagttgttccaaatctatac
tctacttcatcaaggagtcaggtttaccatggttctctccattcgtttac
agagcacaaggtccactcaggacttctcttcctctcaaaggcagtgttgt
actctgagtttctattgcatttgctttccaacctatctgtaccagttgtg
ttacaactggctacagttgctgtgatggatcttcatcctttcagtaatat
ataaacccacaaaacatagtacaataagaatgggctgttacttttatgaa
agctaaagtgagtactttagagataattcaggaagagtatgtagccattt
ttttcttttgaattatatccatgaatgacaattttaaaagactggggaga
tggagataaaaaccttaatggtttacctaaggccttaatgaatccacttc
agactatgggacatataactgaggattgtagacagtatatttcagaagtg
gcttatagaagaaagacaatgtggggctcccaagcatttgaccaaagaaa
taaactttgctttttccatgtcccatctccttagcaaagtaaggtcagat
taacttcatgcatgcattttacatcaaatggcaccattaacatgtattat
attttactgaattttcttgtttaattaaggttattgcctctagttcctat
tttcaaacatgcctaaaatttcattttctgaggcttgcgggattccaata
tgagcattct
gaattccattgaaaaaggaaagtaaatgcaaagcaggctgagaggagagg
acgatcaatggctttgaggctcattttgggagcggaggtatgactcagga
ggcgtggtgtggaggtgaattaatggctgctacgtacaagagtgtgtgta
ctgagcaactccagtcagggtgttccagtgtgaatgttccctccctcatt
tgggcaatgcacaactctgaaagccccaaggaacagaaagctctgtagtg
tatctttgctggtacttcatggaggtcaggcaaattgtgaagggcatatg
atgtaaggaaatcaagtgtgttgagcttccttctgcagacaaggttccct
ggctcagcagcagtagattagcaatgtggtgtgtgaaatgctgagttgtt
ggacatgtgaattcccaggccctgtttcattattatggaataataccggg
agatgcctagcagtctgtttttgattgtttatttttgacatcagtgactc
tgatgcctaccaaagctcaatgatgcttctatgaggagtaaatgcaacca
aagacatcaagcaaggcaatgaattttgtattagtagtgtggacagattg
gtggctgaaatacacaagacaggttggagacacaaatgaagccagggggc
agtttctacagcatctggacgatggacagattataagaccatttctcaag
aggcatttcactcttatttggtacagggtggaggagtccaggatcctctc
tagcttctcactgatttactcattcactctgatgaatgtttcatcatcat
cttacatcattagaaggcagtcatccttggccttaatcaggacttatcat
caaaatgtttctttcataataagaaatattctactcagaactttaggtat
aggcagtaagaatattttcttgatagagttgatcagttcactgaccatgg
gagtaaccatgtgtagttactagaactcttttctatgtaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_15562866_15563930
seq2: B6Ng01-061E15.b_42_1101

seq1  GAATTCATAAGTCAGATTGATGGCAAATCTATGGCTAGAGCTCATATGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATAAGTCAGATTGATGGCAAATCTATGGCTAGAGCTCATATGCC  50

seq1  ATTGCTCCATGCTGGTGCTTTCCACACCAATCAACTTCTAACAGGAAGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCTCCATGCTGGTGCTTTCCACACCAATCAACTTCTAACAGGAAGTT  100

seq1  ATCCCATCCCTTTGATGAGGACTCATCAGCTCATCATTTTTGCCTCTGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCATCCCTTTGATGAGGACTCATCAGCTCATCATTTTTGCCTCTGAT  150

seq1  CCTACTTAGAATGAGTGTAGCTTCCTATTGACAGCTGGAATAGACCAGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACTTAGAATGAGTGTAGCTTCCTATTGACAGCTGGAATAGACCAGGA  200

seq1  ACTAGTAAGTACTTTGCCCAAGGACAAGAAATCATTACATGAAAAGACTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGTAAGTACTTTGCCCAAGGACAAGAAATCATTACATGAAAAGACTA  250

seq1  AAACTGAAATCTAGACTGTGGCGTTTAAGCAATTTTGATTGTATTTTGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGAAATCTAGACTGTGGCGTTTAAGCAATTTTGATTGTATTTTGTA  300

seq1  GGAGGTACTGGAAGGCTTGACCACATGGTACAGTTGTTCCAAATCTATAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGTACTGGAAGGCTTGACCACATGGTACAGTTGTTCCAAATCTATAC  350

seq1  TCTACTTCATCAAGGAGTCAGGTTTACCATGGTTCTCTCCATTCGTTTAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACTTCATCAAGGAGTCAGGTTTACCATGGTTCTCTCCATTCGTTTAC  400

seq1  AGAGCACAAGGTCCACTCAGGACTTCTCTTCCTCTCAAAGGCAGTGTTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCACAAGGTCCACTCAGGACTTCTCTTCCTCTCAAAGGCAGTGTTGT  450

seq1  ACTCTGAGTTTCTATTGCATTTGCTTTCCAACCTATCTGTACCAGTTGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGAGTTTCTATTGCATTTGCTTTCCAACCTATCTGTACCAGTTGTG  500

seq1  TTACAACTGGCTACAGTTGCTGTGATGGATCTTCATCCTTTCAGTAATAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAACTGGCTACAGTTGCTGTGATGGATCTTCATCCTTTCAGTAATAT  550

seq1  ATAAACCCACAAAACATAGTACAATAAGAATGGGCTGTTACTTTTATGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAACCCACAAAACATAGTACAATAAGAATGGGCTGTTACTTTTATGAA  600

seq1  AGCTAAAGTGAGTACTTTAGAGATAATTCAGGAAGAGTATGTAGCCATTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAAAGTGAGTACTTTAGAGATAATTCAGGAAGAGTATGTAGCCATTT  650

seq1  TTTTCTTTTGAATTATATCCATGAATGACAATTTTAAAAGACTGGGGAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTTTGAATTATATCCATGAATGACAATTTTAAAAGACTGGGGAGA  700

seq1  TGGAGATAAAAACCTTAATGGTTTACCTAAGGCCTTAATGAATCCACTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGATAAAAACCTTAATGGTTTACCTAAGGCCTTAATGAATCCACTTC  750

seq1  AGACTATGGGACATATAACTGAGGATTGTAGACAGTATATTTCAGAAGTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTATGGGACATATAACTGAGGATTGTAGACAGTATATTTCAGAAGTG  800

seq1  GCTTATAGAAGAAAGACAATGTGGGGCT-CCAAGCATTTGACCAAAGAAA  849
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  GCTTATAGAAGAAAGACAATGTGGGGCTCCCAAGCATTTGACCAAAGAAA  850

seq1  TAAACTTTGC-TTTTCCATGT-CCATCTCCTTAAGCAAAGTAAGGTCAGA  897
      |||||||||| |||||||||| |||||||||| |||||||||||||||||
seq2  TAAACTTTGCTTTTTCCATGTCCCATCTCCTT-AGCAAAGTAAGGTCAGA  899

seq1  TGAACTTGCATGCATGCATTTTACATCAAAATGGCACCATTAACATGTAT  947
      | ||||| ||||||||||||||||||| ||||||||||||||||||||||
seq2  TTAACTT-CATGCATGCATTTTACATC-AAATGGCACCATTAACATGTAT  947

seq1  TATATTTTACTGAATTTTCTTGTTTAATTAAGGTTTATTGCCTACTAGTT  997
      ||||||||||||||||||||||||||||||||| ||||||||| ||||||
seq2  TATATTTTACTGAATTTTCTTGTTTAATTAAGG-TTATTGCCT-CTAGTT  995

seq1  CCTATTTTCAAACATGCCTAATAATTCCATTTTCCTGAGGCTTGCTGGAT  1047
      ||||||||||||||||||||| |||| |||||| ||||||||||| ||||
seq2  CCTATTTTCAAACATGCCTAA-AATTTCATTTT-CTGAGGCTTGCGGGAT  1043

seq1  TCCAGATATGAGCATTCT  1065
      |||| |||||||||||||
seq2  TCCA-ATATGAGCATTCT  1060

seq1: chr1_15685282_15686274
seq2: B6Ng01-061E15.g_67_1057 (reverse)

seq1  TTTACATAAGAAAAGAGTTCTAGTAAATAACACATAGTTTACTCCCATGC  50
      ||||||| |||||||||||||||||| | |||||| | ||||||||||| 
seq2  TTTACAT-AGAAAAGAGTTCTAGTAACT-ACACAT-GGTTACTCCCATGG  47

seq1  TCAGTGAACTGTTCAACTCTATC-AGAAAATATTCTTACTGCCTATACCT  99
      ||||||||||| ||||||||||| ||||||||||||||||||||||||||
seq2  TCAGTGAACTGATCAACTCTATCAAGAAAATATTCTTACTGCCTATACCT  97

seq1  AAAGTTCTGAGTAGAATATTTTCTTACTATG-AAGAAACATTTTTGATGT  148
      |||||||||||||||||| ||||||| |||| |||||||| |||||||| 
seq2  AAAGTTCTGAGTAGAATA-TTTCTTATTATGAAAGAAACA-TTTTGATGA  145

seq1  TAAGTCCTGGTTAAGGCCAAGGATGACTGCCTTCTAATGATGTAAGATGA  198
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTCCTGATTAAGGCCAAGGATGACTGCCTTCTAATGATGTAAGATGA  195

seq1  TGATG-AACATTCATCAGAGTGAATGAGTAAATCAGTGAGAAGCTAGAGA  247
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGAAACATTCATCAGAGTGAATGAGTAAATCAGTGAGAAGCTAGAGA  245

seq1  GGATCCTGGACTCCTCCACCCTGTACCAAATAAGAGTGAAATGCCTCTTG  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCCTGGACTCCTCCACCCTGTACCAAATAAGAGTGAAATGCCTCTTG  295

seq1  AGAAATGGTCTTATAATCTGTCCATCGTCCAGATGCTGTAGAAACTGCCC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATGGTCTTATAATCTGTCCATCGTCCAGATGCTGTAGAAACTGCCC  345

seq1  CCTGGCTTCATTTGTGTCTCCAACCTGTCTTGTGTATTTCAGCCACCAAT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGCTTCATTTGTGTCTCCAACCTGTCTTGTGTATTTCAGCCACCAAT  395

seq1  CTGTCCACACTACTAATACAAAATTCATTGCCTTGCTTGATGTCTTTGGT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCCACACTACTAATACAAAATTCATTGCCTTGCTTGATGTCTTTGGT  445

seq1  TGCATTTACTCCTCATAGAAGCATCATTGAGCTTTGGTAGGCATCAGAGT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATTTACTCCTCATAGAAGCATCATTGAGCTTTGGTAGGCATCAGAGT  495

seq1  CACTGATGTCAAAAATAAACAATCAAAAACAGACTGCTAGGCATCTCCCG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGATGTCAAAAATAAACAATCAAAAACAGACTGCTAGGCATCTCCCG  545

seq1  GTATTATTCCATAATAATGAAACAGGGCCTGGGAATTCACATGTCCAACA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTATTCCATAATAATGAAACAGGGCCTGGGAATTCACATGTCCAACA  595

seq1  ACTCAGCATTTCACACACCACATTGCTAATCTACTGCTGCTGAGCCAGGG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGCATTTCACACACCACATTGCTAATCTACTGCTGCTGAGCCAGGG  645

seq1  AACCTTGTCTGCAGAAGGAAGCTCAACACACTTGATTTCCTTACATCATA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTTGTCTGCAGAAGGAAGCTCAACACACTTGATTTCCTTACATCATA  695

seq1  TGCCCTTCACAATTTGCCTGACCTCCATGAAGTACCAGCAAAGATACACT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCTTCACAATTTGCCTGACCTCCATGAAGTACCAGCAAAGATACACT  745

seq1  ACAGAGCTTTCTGTTCCTTGGGGCTTTCAGAGTTGTGCATTGCCCAAATG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGCTTTCTGTTCCTTGGGGCTTTCAGAGTTGTGCATTGCCCAAATG  795

seq1  AGGGAGGGAACATTCACACTGGAACACCCTGACTGGAGTTGCTCAGTACA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGGGAACATTCACACTGGAACACCCTGACTGGAGTTGCTCAGTACA  845

seq1  CACACTCTTGTACGTAGCAGCCATTAATTCACCTCCACACCACGCCTCCT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACTCTTGTACGTAGCAGCCATTAATTCACCTCCACACCACGCCTCCT  895

seq1  GAGTCATACCTCCGCTCCCAAAATGAGCCTCAAAGCCATTGATCGTCCTC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCATACCTCCGCTCCCAAAATGAGCCTCAAAGCCATTGATCGTCCTC  945

seq1  TCCTCTCAGCCTGCTTTGCATTTACTTTCCTTTTTCAATGGAATTC  993
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTCAGCCTGCTTTGCATTTACTTTCCTTTTTCAATGGAATTC  991