BAC Information

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BAC

Clone NameB6Ng01-061E16
Chromosome1 (Build37)
Map Location 60,470,969 - 60,621,575
singlet/doubletdoublet
Overlap geneAbi2, Raph1, LOC100043027
Upstream geneFzd7, Gm973, Sumo1, LOC100042476, Nol5, B430105G09Rik, LOC100043007, Bmpr2, Als2cr13, LOC100042496, Ica1l, Wdr12, Carf, Nbeal1, Cyp20a1
Downstream geneLOC100042533, Eif4a-ps4, Cd28, LOC667555, Rpl18-rs8, Ctla4, LOC100043049, Icos, LOC433313, LOC100042566
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-061E16.bB6Ng01-061E16.g
ACCDH882009DH882010
length1,048612
definitionDH882009|Mus musculus domesticus DNA, BAC clone: B6Ng01-061E16, 5' end.DH882010|Mus musculus domesticus DNA, BAC clone: B6Ng01-061E16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(60,620,517 - 60,621,575)(60,470,969 - 60,471,581)
sequence
gaattctctaagtagaatcctagagaggtggcaaaataaggacacttttt
aaaaccctttgttgagtttgttccagacaccagttacagatagctcagtt
gaagtaagtacaaaatgtctacaaaggtttgtaagtgattggtttttcac
cagacattttgtggtatgggattgctgctcacttgtgtttgattttagta
aagagcaatgtgtagctgtttctttgtgatgaatattagctctatttagt
attccacacagactcttgactcaggtctctctcactgagattattaattt
agtgtctggctgacagtagtggagaggtaagcatctttggataatgactt
cacaatttttaacactttgttttctggctagatctttttaactgttatct
ttgaggataattgtgttatttttttgttttttgttgagttttggctctct
ccaaataaataagtaaataaatgttagtggactagaaacaaggataatag
attctgcgatacacatttgcttattgactttggcttggaaatcattgaat
gtcaatattgatattaatcccaaactcttatttctttaggaaaagtgata
ttaatggagtaagatatgtaacctcaggctaattattttgaattcttagt
ttcattacctattaaataggaagtttggagttactggttttcatttgtta
tttcttactgaccttaaggattttaaggatcttagtgtattaacaagagc
ctgtatttgagagggaggctgagatggggaggatactgagtttgagggtg
gcctacataatgagattttgcctcaaaacaaaacaaagggagtaatttaa
ttttgatgaagggcttttaggttctacagacatttgacctaaatgtctaa
aaacgtttggagatacaactcagtgggagagcagttacaaactcttaagg
gcttggtttatactagcacaaaccaaagtctgattttatgcttgagtcag
gacattcattgaaattcaacatatgaaaagctaagacagaaggtttaa
gaattccatttatttatttatgacaaagtcttattaatttttgagacagg
gtttctctgtgtaaatctgtgctggaaattggcaaagattaaaattttta
ggttagtgagtgccattagaatacatgcttatgtcaggccgtggtggcgc
acgcctttagtcccagcacttgggagacagatacaggcagatttctgagt
ttgaggccagcttggtctacaaagtgagttccaggacagcctgggctata
cagagaaaccctgtctcgaaaaagcaaaaaaaaaaaaaaaaaaaaaagaa
gaagaagaaagaaagaaagaatgcatgcttatttttaaaaattgataaga
agtagctagatctccaaggacctaaaagttactgttatcttgaatacaca
tctggaacttgctactctgttgaccaggctggcctggaattcagaggtct
acctgctctgcctcctgattgctgaaagaatcatcccacaagatagattt
atttggaacaaaaattgagtttaccttaagcggggcattggtggcagaca
cttttaatctcagtactcaggaggtggggcaggtggatttctggttcaag
gcagcttggttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_60620517_60621575
seq2: B6Ng01-061E16.b_41_1088 (reverse)

seq1  TTAACCCTTCTGCCTTAGCTTTTCATATGCTCTGATTTCAATGTAATGCT  50
      |||| ||||||| |||||||||||||||| |   ||||||||| |||| |
seq2  TTAAACCTTCTGTCTTAGCTTTTCATATG-TTGAATTTCAATG-AATG-T  47

seq1  CCTGACTTCAAGCATACAAGTCAGACTTTGGTTTTGTGCTAAGTATAAAA  100
      |||||| ||||||||| || ||||||||||| |||||||| |||||||| 
seq2  CCTGAC-TCAAGCATA-AAATCAGACTTTGG-TTTGTGCT-AGTATAAA-  92

seq1  CCCAGGCCCTTATGTGTTTGGTAACTGCTCTCCCACTGAGTTGTATCTCC  150
       ||| ||||||| | |||| ||||||||||||||||||||||||||||||
seq2  -CCAAGCCCTTAAGAGTTT-GTAACTGCTCTCCCACTGAGTTGTATCTCC  140

seq1  AAACGTTTTTATGACATTTAGGTCAAATGTCTGTAGAACCTTAAAAGCCC  200
      ||||||||||| |||||||||||||||||||||||||||| |||||||||
seq2  AAACGTTTTTA-GACATTTAGGTCAAATGTCTGTAGAACC-TAAAAGCCC  188

seq1  TTCATCAAAATTAAATTACTCCCTTTGTTTTGTTTTGAGGCAAAATCTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATCAAAATTAAATTACTCCCTTTGTTTTGTTTTGAGGCAAAATCTCA  238

seq1  TTATGTAGGCCACCCTCAAACTCAGTATCCT-CCCATCTCAGCCTCCCTC  299
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TTATGTAGGCCACCCTCAAACTCAGTATCCTCCCCATCTCAGCCTCCCTC  288

seq1  TCAAATACAGGCTCTTGTTAATACACTAAGATCCTTAAAATCCTTAAGGT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATACAGGCTCTTGTTAATACACTAAGATCCTTAAAATCCTTAAGGT  338

seq1  CAGTAAGAAATAACAAATGAAAACCAGTAACTCCAAACTTCCTATTTAAT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAAGAAATAACAAATGAAAACCAGTAACTCCAAACTTCCTATTTAAT  388

seq1  AGGTAATGAAACTAAGAATTCAAAATAATTAGCCTGAGGTTACATATCTT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAATGAAACTAAGAATTCAAAATAATTAGCCTGAGGTTACATATCTT  438

seq1  ACTCCATTAATATCACTTTTCCTAAAGAAATAAGAGTTTGGGATTAATAT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCATTAATATCACTTTTCCTAAAGAAATAAGAGTTTGGGATTAATAT  488

seq1  CAATATTGACATTCAATGATTTCCAAGCCAAAGTCAATAAGCAAATGTGT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATATTGACATTCAATGATTTCCAAGCCAAAGTCAATAAGCAAATGTGT  538

seq1  ATCGCAGAATCTATTATCCTTGTTTCTAGTCCACTAACATTTATTTACTT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGCAGAATCTATTATCCTTGTTTCTAGTCCACTAACATTTATTTACTT  588

seq1  ATTTATTTGGAGAGAGCCAAAACTCAACAAAAAACAAAAAAATAACACAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATTTGGAGAGAGCCAAAACTCAACAAAAAACAAAAAAATAACACAA  638

seq1  TTATCCTCAAAGATAACAGTTAAAAAGATCTAGCCAGAAAACAAAGTGTT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCCTCAAAGATAACAGTTAAAAAGATCTAGCCAGAAAACAAAGTGTT  688

seq1  AAAAATTGTGAAGTCATTATCCAAAGATGCTTACCTCTCCACTACTGTCA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATTGTGAAGTCATTATCCAAAGATGCTTACCTCTCCACTACTGTCA  738

seq1  GCCAGACACTAAATTAATAATCTCAGTGAGAGAGACCTGAGTCAAGAGTC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGACACTAAATTAATAATCTCAGTGAGAGAGACCTGAGTCAAGAGTC  788

seq1  TGTGTGGAATACTAAATAGAGCTAATATTCATCACAAAGAAACAGCTACA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGGAATACTAAATAGAGCTAATATTCATCACAAAGAAACAGCTACA  838

seq1  CATTGCTCTTTACTAAAATCAAACACAAGTGAGCAGCAATCCCATACCAC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGCTCTTTACTAAAATCAAACACAAGTGAGCAGCAATCCCATACCAC  888

seq1  AAAATGTCTGGTGAAAAACCAATCACTTACAAACCTTTGTAGACATTTTG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGTCTGGTGAAAAACCAATCACTTACAAACCTTTGTAGACATTTTG  938

seq1  TACTTACTTCAACTGAGCTATCTGTAACTGGTGTCTGGAACAAACTCAAC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTACTTCAACTGAGCTATCTGTAACTGGTGTCTGGAACAAACTCAAC  988

seq1  AAAGGGTTTTAAAAAGTGTCCTTATTTTGCCACCTCTCTAGGATTCTACT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGGTTTTAAAAAGTGTCCTTATTTTGCCACCTCTCTAGGATTCTACT  1038

seq1  TAGAGAATTC  1059
      ||||||||||
seq2  TAGAGAATTC  1048

seq1: chr1_60470969_60471581
seq2: B6Ng01-061E16.g_69_680

seq1  GAATTCCATTTATTTATTTATGACAAAGTCTTATTAATTTTTGAGACAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATTTATTTATTTATGACAAAGTCTTATTAATTTTTGAGACAGG  50

seq1  GTTTCTCTGTGTAAATCTGTGCTGGAAATTGGCAAAGATTAAAATTTTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTCTGTGTAAATCTGTGCTGGAAATTGGCAAAGATTAAAATTTTTA  100

seq1  GGTTAGTGAGTGCCATTAGAATACATGCTTATGTCAGGCCGTGGTGGCGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTAGTGAGTGCCATTAGAATACATGCTTATGTCAGGCCGTGGTGGCGC  150

seq1  ACGCCTTTAGTCCCAGCACTTGGGAGACAGATACAGGCAGATTTCTGAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCCTTTAGTCCCAGCACTTGGGAGACAGATACAGGCAGATTTCTGAGT  200

seq1  TTGAGGCCAGCTTGGTCTACAAAGTGAGTTCCAGGACAGCCTGGGCTATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGGCCAGCTTGGTCTACAAAGTGAGTTCCAGGACAGCCTGGGCTATA  250

seq1  CAGAGAAACCCTGTCTCGAAAAAGCAAAAAAAAAAAAAAAAAAAAAAGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGAAACCCTGTCTCGAAAAAGCAAAAAAAAAAAAAAAAAAAAAAGAA  300

seq1  GAAGAAGAAAGAAAGAAAGAATGCATGCTTATTTTTAAAAATTGATAAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAGAAAGAAAGAAAGAATGCATGCTTATTTTTAAAAATTGATAAGA  350

seq1  AGTAGCTAGATCTCCAAGGACCTAAAAGTTACTGTTATCTTGAATACACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGCTAGATCTCCAAGGACCTAAAAGTTACTGTTATCTTGAATACACA  400

seq1  TCTGGAACTTGCTACTCTGTTGACCAGGCTGGCCTGGAATTCAGAGGTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGAACTTGCTACTCTGTTGACCAGGCTGGCCTGGAATTCAGAGGTCT  450

seq1  ACCTGCTCTGCCTCCTGATTGCTGAAAGAATCATCCCACAAGATAGATTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGCTCTGCCTCCTGATTGCTGAAAGAATCATCCCACAAGATAGATTT  500

seq1  ATTTGGAACAAAAATTGAGTTTACCTTAAGCGGGGCATTGGTGGCAGACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGGAACAAAAATTGAGTTTACCTTAAGCGGGGCATTGGTGGCAGACA  550

seq1  CCTTTAATCTCAGTACTCAGGAGGTGGGGCAGGTGGATTTCTGGTTCAAG  600
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTAATCTCAGTACTCAGGAGGTGGGGCAGGTGGATTTCTGGTTCAAG  600

seq1  GCCAGCTTGGTTT  613
      | |||||||||||
seq2  G-CAGCTTGGTTT  612