BAC Information

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BAC

Clone NameB6Ng01-061F17
Chromosome1 (Build37)
Map Location 21,845,066 - 21,971,046
singlet/doubletdoublet
Overlap geneKcnq5
Upstream genePaqr8, Efhc1, Tram2, LOC100040291, Tmem14a, Gsta3, EG632802, EG241041, LOC100040309, Ndg1, BC099381, LOC100040319, AU024076, D1Mgi28
Downstream geneLOC435612, LOC100040338, Rims1, Rims1, EG665725
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-061F17.bB6Ng01-061F17.g
ACCDH882059DH882060
length1,166542
definitionDH882059|Mus musculus domesticus DNA, BAC clone: B6Ng01-061F17, 5' end.DH882060|Mus musculus domesticus DNA, BAC clone: B6Ng01-061F17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(21,969,857 - 21,971,046)(21,845,066 - 21,845,635)
sequence
gaattctcagtcaaaaatgcaggttgcccactggcaaatatcacagtaag
aatattcattattgggtattacctcaaaatattgaccaaagtatagccag
agagctggagagttgatagaaatgtggcatgcctttggtcctaaggacta
atgctatcaacagagcttcttcctgtggtgtctagcacactgaattcact
agaaactaatagactatccacagtaattgtggctaacaacagacttttga
gcttccatatttgcatcaagagtaactggcctacacgtatgaagtcaccc
tgtagcagtctgttgtcttaagtgtgtaacatttctggatgcgtgtatgt
ctagttgtggggtatgtgactgtaagtgtagttgtcctcagaggccagaa
acactgaatccccattgagttggagttaaaggtggttgtgagcagcctaa
tgtagcttctgggagctgaactcgtatcctgatcaagaaaagcatagact
cttagccactaagatatctctgaagcccagcacattaattttaaagttac
tggtctgctcatgactcacatttagagccaatgaagaacaatgaccatta
tccagaaattctcctgctggagtgataagtatattcatagcattaacaga
ggattctgtcttctctgtatatatagagagttgtacagatgttgaaatgt
caaatggatgaactatggtagacattgttaattttttattccttatttcc
tttaataaaaatagatttcaattatttcccagtgtgtcatactaaaatgg
ttcactattcttaccttatatgcatttatggttgaccatgtgacagctca
gccaaatggacattaggtaggaatcccttgagaagacactttttctaaat
aaagggaaaagtacatttttctattattttcactgttaccagaattttta
gggtcagagtcttgaccctggcagctgacagactgggcttggcttcctgc
tttcacaggcatttaatatacagtgaaaggaaacgaaaaagaatttatcc
acctagttaattgaagaggaacaagttcattaaactccatgtctatttct
gggtcttgactgaaggtttgatttaagagaggtaaaatgaaaatacctag
ctagtagtttgtcaaa
gaattcagtgaacccaagtcctgcagattcttcctttgtaagaacttgtc
atccccaacttcgtacagtgttaaagacatcatcctgtcttatctagatt
aggtaaactaccttgacatcccctttgtttggatcctgtttatccataac
ctattttcatttgcccgtgggatgattctctgacatgcaaagctgagcac
atcccttcttgtttctagttctataatcagggataatataaattttaatt
agtctggcacagaggcccccatgatctagcttcatgcccactctcatttc
ttcagtcattcccagctgacaaaaatgtaagaactggcaatactacacaa
tgaatagttcgctctttcatttcccaatttcagatatgccgtgttcagtg
ggtaggttatttacttcccattaactctcctttccagtcaaccagataaa
caaccatatttgtagtgtatgtgatatgtagtgcatgtgtgcatgtgtgt
gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_21969857_21971046
seq2: B6Ng01-061F17.b_48_1213 (reverse)

seq1  TTTGAACAAGACTACTTAGCTAGGTATATCTCATGTTTACTCTCATCTAA  50
      |||| |||| ||||| ||||||||||| | |||| ||  |||||   |||
seq2  TTTG-ACAA-ACTAC-TAGCTAGGTAT-TTTCATTTTACCTCTC--TTAA  44

seq1  ATCCAAACCTCATGTCAAGACCCAGAAATAGACATGGGAGTTTTACTGAA  100
      || |||||||   |||||||||||||||||||||| |||| |||| ||||
seq2  AT-CAAACCTTCAGTCAAGACCCAGAAATAGACAT-GGAG-TTTAATGAA  91

seq1  CTTTGTTCCTCTTTCCAATGTAACTATGTTGGATAAATATCTTTTTTCCC  150
      | |||||||||||  |||| |||||| | ||||||||| |||||||   |
seq2  C-TTGTTCCTCTT--CAAT-TAACTA-GGTGGATAAAT-TCTTTTT---C  132

seq1  TTTTCCCTTTCACTTGTATATTTAAATGGCCTGTTGAAGGCAGGAAGCCA  200
       ||| |||||||| |||||| |||||| ||||| |||| |||||||||||
seq2  GTTT-CCTTTCAC-TGTATA-TTAAAT-GCCTG-TGAAAGCAGGAAGCCA  177

seq1  AGCCCAGTCTGTTCAGCTGCCAGGGTCAAGACTCTGACCCTAAAAATTCT  250
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  AGCCCAGTCTG-TCAGCTGCCAGGGTCAAGACTCTGACCCTAAAAATTCT  226

seq1  GGTAACAGTGAAAATAATAGAAAAATGTACTTTTCCCTTTATTTAGAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAACAGTGAAAATAATAGAAAAATGTACTTTTCCCTTTATTTAGAAAA  276

seq1  AGTGTCTTCTCAAGGGATTCCTACCTAATGTCCATTTGGCTGAGCTGTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTCTTCTCAAGGGATTCCTACCTAATGTCCATTTGGCTGAGCTGTCA  326

seq1  CATGGTCAACCATAAATGCATATAAGGTAAGAATAGTGAACCATTTTAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGTCAACCATAAATGCATATAAGGTAAGAATAGTGAACCATTTTAGT  376

seq1  ATGACACACTGGGAAATAATTGAAATCTATTTTTATTAAAGGAAATAAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACACACTGGGAAATAATTGAAATCTATTTTTATTAAAGGAAATAAGG  426

seq1  AATAAAAAATTAACAATGTCTACCATAGTTCATCCATTTGACATTTCAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAAAATTAACAATGTCTACCATAGTTCATCCATTTGACATTTCAAC  476

seq1  ATCTGTACAACTCTCTATATATACAGAGAAGACAGAATCCTCTGTTAATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGTACAACTCTCTATATATACAGAGAAGACAGAATCCTCTGTTAATG  526

seq1  CTATGAATATACTTATCACTCCAGCAGGAGAATTTCTGGATAATGGTCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGAATATACTTATCACTCCAGCAGGAGAATTTCTGGATAATGGTCAT  576

seq1  TGTTCTTCATTGGCTCTAAATGTGAGTCATGAGCAGACCAGTAACTTTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTTCATTGGCTCTAAATGTGAGTCATGAGCAGACCAGTAACTTTAA  626

seq1  AATTAATGTGCTGGGCTTCAGAGATATCTTAGTGGCTAAGAGTCTATGCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAATGTGCTGGGCTTCAGAGATATCTTAGTGGCTAAGAGTCTATGCT  676

seq1  TTTCTTGATCAGGATACGAGTTCAGCTCCCAGAAGCTACATTAGGCTGCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTGATCAGGATACGAGTTCAGCTCCCAGAAGCTACATTAGGCTGCT  726

seq1  CACAACCACCTTTAACTCCAACTCAATGGGGATTCAGTGTTTCTGGCCTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAACCACCTTTAACTCCAACTCAATGGGGATTCAGTGTTTCTGGCCTC  776

seq1  TGAGGACAACTACACTTACAGTCACATACCCCACAACTAGACATACACGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGACAACTACACTTACAGTCACATACCCCACAACTAGACATACACGC  826

seq1  ATCCAGAAATGTTACACACTTAAGACAACAGACTGCTACAGGGTGACTTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAGAAATGTTACACACTTAAGACAACAGACTGCTACAGGGTGACTTC  876

seq1  ATACGTGTAGGCCAGTTACTCTTGATGCAAATATGGAAGCTCAAAAGTCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACGTGTAGGCCAGTTACTCTTGATGCAAATATGGAAGCTCAAAAGTCT  926

seq1  GTTGTTAGCCACAATTACTGTGGATAGTCTATTAGTTTCTAGTGAATTCA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTTAGCCACAATTACTGTGGATAGTCTATTAGTTTCTAGTGAATTCA  976

seq1  GTGTGCTAGACACCACAGGAAGAAGCTCTGTTGATAGCATTAGTCCTTAG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGCTAGACACCACAGGAAGAAGCTCTGTTGATAGCATTAGTCCTTAG  1026

seq1  GACCAAAGGCATGCCACATTTCTATCAACTCTCCAGCTCTCTGGCTATAC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAAAGGCATGCCACATTTCTATCAACTCTCCAGCTCTCTGGCTATAC  1076

seq1  TTTGGTCAATATTTTGAGGTAATACCCAATAATGAATATTCTTACTGTGA  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGTCAATATTTTGAGGTAATACCCAATAATGAATATTCTTACTGTGA  1126

seq1  TATTTGCCAGTGGGCAACCTGCATTTTTGACTGAGAATTC  1190
      ||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGCCAGTGGGCAACCTGCATTTTTGACTGAGAATTC  1166

seq1: chr1_21845066_21845635
seq2: B6Ng01-061F17.g_70_611

seq1  GAATTCAGTGAACCCAAGTCCTGCAGATTCTTCCTTTGTAAGAACTTGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTGAACCCAAGTCCTGCAGATTCTTCCTTTGTAAGAACTTGTC  50

seq1  ATCCCCAACTTCGTACAGTGTTAAAGACATCATCCTGTCTTATCTAGATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCCAACTTCGTACAGTGTTAAAGACATCATCCTGTCTTATCTAGATT  100

seq1  AGGTAAACTACCTTGACATCCCCTTTGTTTGGATCCTGTTTATCCATAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAAACTACCTTGACATCCCCTTTGTTTGGATCCTGTTTATCCATAAC  150

seq1  CTATTTTCATTTGCCCGTGGGATGATTCTCTGACATGCAAAGCTGAGCAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTTCATTTGCCCGTGGGATGATTCTCTGACATGCAAAGCTGAGCAC  200

seq1  ATCCCTTCTTGTTTCTAGTTCTATAATCAGGGATAATATAAATTTTAATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCTTCTTGTTTCTAGTTCTATAATCAGGGATAATATAAATTTTAATT  250

seq1  AGTCTGGCACAGAGGCCCCCATGATCTAGCTTCATGCCCACTCTCATTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTGGCACAGAGGCCCCCATGATCTAGCTTCATGCCCACTCTCATTTC  300

seq1  TTCAGTCATTCCCAGCTGACAAAAATGTAAGAACTGGCAATACTACACAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTCATTCCCAGCTGACAAAAATGTAAGAACTGGCAATACTACACAA  350

seq1  TGAATAGTTCGCTCTTTCATTTCCCAATTTCAGATATGCCGTGTTCAGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATAGTTCGCTCTTTCATTTCCCAATTTCAGATATGCCGTGTTCAGTG  400

seq1  GGTAGGTTATTTACTTCCCATTAACTCTCCTTTCCAGTCAACCAGATAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGGTTATTTACTTCCCATTAACTCTCCTTTCCAGTCAACCAGATAAA  450

seq1  CAACCATATTTGTAGTGTATGTGATATGTAGTGCATGTGTGCATGTGTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCATATTTGTAGTGTATGTGATATGTAGTGCATGTGTGCATGTGTGT  500

seq1  GTGTGTGTGTGTGTGTGTGTGTGTGTGTAAATACATATGAATTGTGTGTG  550
      |||||||||||||||||||||||||||               ||||||||
seq2  GTGTGTGTGTGTGTGTGTGTGTGTGTG---------------TGTGTGTG  535

seq1  ATTTATGCACATTTGTGTGT  570
                   |||||||
seq2  -------------TGTGTGT  542