BAC Information

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BAC

Clone NameB6Ng01-061H05
Chromosome1 (Build37)
Map Location 160,614,354 - 160,686,634
singlet/doubletdoublet
Overlap geneAstn1, Pappa2
Upstream gene6430517E21Rik
Downstream gene4930562F17Rik, EG240853, LOC664972, Rfwd2, EG620484, Tnr
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-061H05.bB6Ng01-061H05.g
ACCDH882124DH882125
length1,1101,104
definitionDH882124|Mus musculus domesticus DNA, BAC clone: B6Ng01-061H05, 5' end.DH882125|Mus musculus domesticus DNA, BAC clone: B6Ng01-061H05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(160,614,354 - 160,615,552)(160,685,514 - 160,686,634)
sequence
gaattcacctggcggtgtgaagatgagttaggacccaggtacacagtgaa
ccttgctacctctttgaaacactccctggattcttgtgtctctcatgttg
ttacagttcttcatggaagttgcagagattttactgacagagtcttagat
ggtctaaaactaagctgctttacgcagcccagactgtgcaaaaatggttt
gcagtaggttccttttaagcagggaactcacatccctgaactctgaaaat
aagcctttactcctgatattaattacttgacacacaactcccaatgctaa
atttgaagtgaacaatgtgaagtcttgtgaaaggaattaggaattttgtt
aaagaggttatcctgaaacatctagtgcccatgaatgttacctgtcttat
gtggacctttgcatgctcttttgagacagtgtcagagaagatgaggcctc
cactaaggtggaatggtattcacttacttaccctggacccaaccttgtcc
cttcctagtacagagtatacactcattttagatcgcagagtccagataga
gtatctggaaagtgggggatgacggatgtggagagatataccttcccagt
tataacatttttatgatcacacactgctatctttagaaggtaggctttcc
tagaaattctggaattcttagacaggataaagatttgggttgcatgaaat
ttagtaaattatttaagaactcgtgaaaaaaaatggaagtagagaaaggg
ctacgagaatgtggggaaagaacatggaagaaaaagaaaaggacaagaaa
ggagaagaggacagggtggaatggaagaaggaggacagatggacagggag
aggtgagggagcagaaaaggaggatggacgggaaggacatgggaagataa
tggaggaatcagtactataggaccctgcacacctctacccgattctaaac
agttctatattctgtcaacaaggggaagcacagtgtccctcagatgtcat
cccactccattcatctgacaccagagacactcactagtagttttaatggt
caagaggccattgtcaggacatttcctgatacgtctcttctcttcttctc
tctcttctct
gaattccagacaaggagtactttgccattttcaagtcttcatgtttcctt
ctcttgatttctcccttttctctcatttgacttgctaatttcagcatcag
gttgagcacaaagggttctcaaagtaggtaaacatctcacccttcatcca
aacaccatttcatctctgaggtagaaggaaagtggtggttgcaggaaagc
aaaacctgcagaatggaggcctccaccgagacaaagttttgttgttccaa
actctatttaagggtaatgtaaattggtcatggctacttttctctgctct
gtcatgagaagtctttgttataccttctaaagggaaaatgtcgatatttt
aactttgaaagatgaggtctttcaggaatccatttcatgaggagattttt
gtttgtttttctgacttttgggatttttttgttttgtttttgtttttgtt
ttgttttggtttggtttggtttaaacacattgcagtagttccttgcctgg
aactgagtcttcctaaattgtattttaaagtgattccttccaaagccgaa
ggcgtgtatcatctcctgtcatttcttcattattttgtctcataaattcc
tgcttcacagactgaacaatgctctcctctattgttaagtactgtcatac
tatgaatcagtcaggtgcaagttagtgagatttcaccaaagggacagttg
acattttggaaagaactttaagacaacctgcactccttgtcagatcccca
gctcttcaaaagcccagggacagcaaagcctatcatttttattttggttt
gctttcccaaattcaccctgtaaggattagtggttgttttagtaaacaga
atagtttaaagcaaaagagaaacaggagttgaaagttgtcttactgtgca
atagattcccatcccttcttgctatcactgctcctgctattaacctactc
catatggatagtcaatctgtattctcattcttttgctgtgactaaataat
gtaaaccttttcatgtttgccaatgtcagattaatttatgacagcagatt
gacatattccctggtttaatgtaactcagtttcaagtatcagatggcata
cctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_160614354_160615552
seq2: B6Ng01-061H05.b_46_1155

seq1  GAATTCACCTGGCGGTGTGAAGATGAGTTAGGACCCAGGTACACAGTGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCTGGCGGTGTGAAGATGAGTTAGGACCCAGGTACACAGTGAA  50

seq1  CCTTGCTACCTCTTTGAAACACTCCCTGGATTCTTGTGTCTCTCATGTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGCTACCTCTTTGAAACACTCCCTGGATTCTTGTGTCTCTCATGTTG  100

seq1  TTACAGTTCTTCATGGAAGTTGCAGAGATTTTACTGACAGAGTCTTAGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAGTTCTTCATGGAAGTTGCAGAGATTTTACTGACAGAGTCTTAGAT  150

seq1  GGTCTAAAACTAAGCTGCTTTACGCAGCCCAGACTGTGCAAAAATGGTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTAAAACTAAGCTGCTTTACGCAGCCCAGACTGTGCAAAAATGGTTT  200

seq1  GCAGTAGGTTCCTTTTAAGCAGGGAACTCACATCCCTGAACTCTGAAAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTAGGTTCCTTTTAAGCAGGGAACTCACATCCCTGAACTCTGAAAAT  250

seq1  AAGCCTTTACTCCTGATATTAATTACTTGACACACAACTCCCAATGCTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCTTTACTCCTGATATTAATTACTTGACACACAACTCCCAATGCTAA  300

seq1  ATTTGAAGTGAACAATGTGAAGTCTTGTGAAAGGAATTAGGAATTTTGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGAAGTGAACAATGTGAAGTCTTGTGAAAGGAATTAGGAATTTTGTT  350

seq1  AAAGAGGTTATCCTGAAACATCTAGTGCCCATGAATGTTACCTGTCTTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGGTTATCCTGAAACATCTAGTGCCCATGAATGTTACCTGTCTTAT  400

seq1  GTGGACCTTTGCATGCTCTTTTGAGACAGTGTCAGAGAAGATGAGGCCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGACCTTTGCATGCTCTTTTGAGACAGTGTCAGAGAAGATGAGGCCTC  450

seq1  CACTAAGGTGGAATGGTATTCACTTACTTACCCTGGACCCAACCTTGTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTAAGGTGGAATGGTATTCACTTACTTACCCTGGACCCAACCTTGTCC  500

seq1  CTTCCTAGTACAGAGTATACACTCATTTTAGATCGCAGAGTCCAGATAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTAGTACAGAGTATACACTCATTTTAGATCGCAGAGTCCAGATAGA  550

seq1  GTATCTGGAAAGTGGGGGATGACGGATGTGGAGAGATATACCTTCCCAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCTGGAAAGTGGGGGATGACGGATGTGGAGAGATATACCTTCCCAGT  600

seq1  TATAACATTTTTATGATCACACACTGCTATCTTTAGAAGGTAGGCTTTCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAACATTTTTATGATCACACACTGCTATCTTTAGAAGGTAGGCTTTCC  650

seq1  TAGAAATTCTGGAATTCTTAGACAGGATAAAGATTTGGGTTGCATGAAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAATTCTGGAATTCTTAGACAGGATAAAGATTTGGGTTGCATGAAAT  700

seq1  TTAGTAAATTATTTAAGAACTCGTGAAAAAAAATGGAAGTAGAGAAAGGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTAAATTATTTAAGAACTCGTGAAAAAAAATGGAAGTAGAGAAAGGG  750

seq1  CTACGAGAATGTGGGGAAAGAACATGGAAGAAAAAGAAAAGGACAAGAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACGAGAATGTGGGGAAAGAACATGGAAGAAAAAGAAAAGGACAAGAAA  800

seq1  GGAGAAGAGGACAGGGTGGAATGGAAGAAGGAGGACAGATGGACAGGGAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAAGAGGACAGGGTGGAATGGAAGAAGGAGGACAGATGGACAGGGAG  850

seq1  AGGTGAGGGAGCAAGAAAAGGAGGATGGACGGGAAGGACATGGGAAGATA  900
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  AGGTGAGGGAGC-AGAAAAGGAGGATGGACGGGAAGGACATGGGAAGATA  899

seq1  ATGGAGGAATCAGTACTATAGGACCCTGCACACCCCTACCCCGATTCTTA  950
      |||||||||||||||||||||||||||||||||| ||| |||||||| ||
seq2  ATGGAGGAATCAGTACTATAGGACCCTGCACACCTCTA-CCCGATTC-TA  947

seq1  AACAGTTCTTATATTTCTGTCAACAAGGGGAAGCACAGTGTCCCCCAGAT  1000
      |||||||| |||| |||||||||||||||||||||||||||||| |||||
seq2  AACAGTTC-TATA-TTCTGTCAACAAGGGGAAGCACAGTGTCCCTCAGAT  995

seq1  GTCATCCCACCCCATTCATCTGACACCAGAGGACACTCACCTTAGTAGTT  1050
      |||||||||| ||||||||||||||||||| |||||||||  ||||||||
seq2  GTCATCCCACTCCATTCATCTGACACCAGA-GACACTCAC--TAGTAGTT  1042

seq1  ATAAATGGTCACAGAAGCCCATTGTTCAGGACATTTCCCTTGTATTTC-C  1099
       | |||||||| || || |||||| ||||||||||| |||  ||  || |
seq2  -TTAATGGTCA-AG-AGGCCATTG-TCAGGACATTT-CCTGATACGTCTC  1087

seq1  TTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTT  1149
      ||| |||||||||   ||||| |||                         
seq2  TTC-TCTTCTTCTCTCTCTTC-TCT-------------------------  1110

seq1  CTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTCTCTCTCTCTCT  1199
                                                        
seq2  --------------------------------------------------  1110

seq1: chr1_160685514_160686634
seq2: B6Ng01-061H05.g_68_1171 (reverse)

seq1  GAGGTATGCCAGTCTGAACTACTCTGAAAACTGAGTTAACATTTAAAACC  50
      ||||||||||| |||||  |||| || |||||||||| |||||  |||||
seq2  GAGGTATGCCA-TCTGA--TACT-TG-AAACTGAGTT-ACATT--AAACC  42

seq1  AGTGAATATTGTCAATCTCGCTGTCATAAATTTATCTGACATTTGCATAC  100
      || ||||| ||||||||| ||||||||||||| |||||||||| ||| ||
seq2  AGGGAATA-TGTCAATCT-GCTGTCATAAATTAATCTGACATTGGCAAAC  90

seq1  ATGAAAAGGTTTTACATTTACTTAGTCACAGCAAAAGGAATGAGAATAAC  150
      ||||||||| |||||| ||| ||||||||||||||| |||||||||| ||
seq2  ATGAAAAGG-TTTACA-TTATTTAGTCACAGCAAAA-GAATGAGAAT-AC  136

seq1  AGAATTGACTATCCATATGGAGTAGGTTAAATAGCAAGGAGCAGTGATAG  200
      || ||||||||||||||||||||||||| |||||| ||||||||||||||
seq2  AG-ATTGACTATCCATATGGAGTAGGTT-AATAGC-AGGAGCAGTGATAG  183

seq1  CAAGAAGGGATGGGAATCTATTGCACAGTAAGACAACTTTCAACTCCTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAAGGGATGGGAATCTATTGCACAGTAAGACAACTTTCAACTCCTGT  233

seq1  TTCTCTTTTGCTTTAAACTATTCTGTTTACTAAAACAACCACTAATCCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTTTTGCTTTAAACTATTCTGTTTACTAAAACAACCACTAATCCTT  283

seq1  ACAGGGTGAATTTGGGAAAGCAAACCAAAATAAAAATGATAGGCTTTGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGGTGAATTTGGGAAAGCAAACCAAAATAAAAATGATAGGCTTTGCT  333

seq1  GTCCCTGGGCTTTTGAAGAGCTGGGGATCTGACAAGGAGTGCAGGTTGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCTGGGCTTTTGAAGAGCTGGGGATCTGACAAGGAGTGCAGGTTGTC  383

seq1  TTAAAGTTCTTTCCAAAATGTCAACTGTCCCTTTGGTGAAATCTCACTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGTTCTTTCCAAAATGTCAACTGTCCCTTTGGTGAAATCTCACTAA  433

seq1  CTTGCACCTGACTGATTCATAGTATGACAGTACTTAACAATAGAGGAGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCACCTGACTGATTCATAGTATGACAGTACTTAACAATAGAGGAGAG  483

seq1  CATTGTTCAGTCTGTGAAGCAGGAATTTATGAGACAAAATAATGAAGAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGTTCAGTCTGTGAAGCAGGAATTTATGAGACAAAATAATGAAGAAA  533

seq1  TGACAGGAGATGATACACGCCTTCGGCTTTGGAAGGAATCACTTTAAAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAGGAGATGATACACGCCTTCGGCTTTGGAAGGAATCACTTTAAAAT  583

seq1  ACAATTTAGGAAGACTCAGTTCCAGGCAAGGAACTACTGCAATGTGTTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATTTAGGAAGACTCAGTTCCAGGCAAGGAACTACTGCAATGTGTTTA  633

seq1  AACCAAACCAAACCAAAACAAAACAAAAACAAAAACAAAACAAAAAAATC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAAACCAAACCAAAACAAAACAAAAACAAAAACAAAACAAAAAAATC  683

seq1  CCAAAAGTCAGAAAAACAAACAAAAATCTCCTCATGAAATGGATTCCTGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAAGTCAGAAAAACAAACAAAAATCTCCTCATGAAATGGATTCCTGA  733

seq1  AAGACCTCATCTTTCAAAGTTAAAATATCGACATTTTCCCTTTAGAAGGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACCTCATCTTTCAAAGTTAAAATATCGACATTTTCCCTTTAGAAGGT  783

seq1  ATAACAAAGACTTCTCATGACAGAGCAGAGAAAAGTAGCCATGACCAATT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACAAAGACTTCTCATGACAGAGCAGAGAAAAGTAGCCATGACCAATT  833

seq1  TACATTACCCTTAAATAGAGTTTGGAACAACAAAACTTTGTCTCGGTGGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTACCCTTAAATAGAGTTTGGAACAACAAAACTTTGTCTCGGTGGA  883

seq1  GGCCTCCATTCTGCAGGTTTTGCTTTCCTGCAACCACCACTTTCCTTCTA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTCCATTCTGCAGGTTTTGCTTTCCTGCAACCACCACTTTCCTTCTA  933

seq1  CCTCAGAGATGAAATGGTGTTTGGATGAAGGGTGAGATGTTTACCTACTT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAGAGATGAAATGGTGTTTGGATGAAGGGTGAGATGTTTACCTACTT  983

seq1  TGAGAACCCTTTGTGCTCAACCTGATGCTGAAATTAGCAAGTCAAATGAG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAACCCTTTGTGCTCAACCTGATGCTGAAATTAGCAAGTCAAATGAG  1033

seq1  AGAAAAGGGAGAAATCAAGAGAAGGAAACATGAAGACTTGAAAATGGCAA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAGGGAGAAATCAAGAGAAGGAAACATGAAGACTTGAAAATGGCAA  1083

seq1  AGTACTCCTTGTCTGGAATTC  1121
      |||||||||||||||||||||
seq2  AGTACTCCTTGTCTGGAATTC  1104