BAC Information

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BAC

Clone NameB6Ng01-061N10
Chromosome1 (Build37)
Map Location 50,986,134 - 50,987,338
singlet/doubletsinglet
Overlap geneTmeff2
Upstream geneEG666962, EG666970, LOC100041993
Downstream geneSdpr, LOC383504, Obfc2a, Myo1b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-061N10.bB6Ng01-061N10.g
ACCDH882410DH882411
length7211,175
definitionDH882410|Mus musculus domesticus DNA, BAC clone: B6Ng01-061N10, 5' end.DH882411|Mus musculus domesticus DNA, BAC clone: B6Ng01-061N10, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcagaacagaggaatatcaaatagctgaaaagcacttaaagcaatg
ttcaaagttattagtaatcagggaaatgcaaatcaaaatgaccctgagat
tctaccttagaacaatcagaatggctaagatcaaaaactcaggtgacagc
acatgttggagatgatgtcgagaaagatgaacactactccattgatggtg
ggattgcaaactggaagtcaatctgtaggttcctcagaaaatttgatata
gagctacatgaaaacacagctatactactcttgggcatataaccaaagaa
taccataccataccacaggggcatgtgctccactatgttcatagtggcct
tatttgtgataaccagaagctggaaacaacctagatgtcccatgacagaa
gaatgtaaacagaaaatgtggttcatttatacaatggaattctactcagc
tattaagaatgaggacaccctgaattgttcaggctaatgaatgggactag
aaaatatcctgaatgaggtaactcagacccaaaagggtatgcatggtatg
tactcacttataagtggatattagcaccccccccaaaaaaaataaagaat
acccaggatataatccacaaactcaaggttaaaaagcagaagggcccaag
tgaggatatttcaataccatttgggagggaaaagaaaggtatcatgggag
gtagagggagggagggacctg

gaattctagtttgtagcacaaacagaattttcttaaaatttaattccaac
agccacaagtgtgccttctactaataacctcaaaagtgatcaataatagt
ccatacatttacaactgtttcctaataaagtctccctcagtatcaccttt
tgagcatgctttcttaaatttagcttagactaatagtgactgtgtgagtg
aaagtttgacatttgcttctctgctttctttttaatttttttcctcacta
agtagggtatatcagtgacccaaactcaatatttaggaaaagatttggtg
atggtttgtagttgccattttaatatttctgcctttaattgttcttcgct
ttaagatatgaaatgacccttacttacagttttttttccagacaaagagg
aagcaaaacctcaataataaagataaacagacttggtgttttctgtgaag
gtctttctgactcaaaggaagattgatcaccttcaagttaacagggatgg
gtgggggctgccaagctcttcacaaccttccagaaatacagttcttcatt
tttagttagtgaacacagctttgagagatctggtttataacacatttcct
cattgtcaatgttatattcaagctaggtattcctaataccaatattagtt
aggaaacaagctagtcatgttgaacattagttatgatcaaattttaagga
tgttctgttcccaagtggaatttattctttttaaaatagcatacatgaat
gaaggaactaagaataagttagagacatgttgtgtttcataaaatgccaa
atttagaaattaccaaaagaagaaccaagtcagtctactgacccaaatct
aatatgactgtacatttcaacttgtcttagccaaggttaaactggagtgg
tgcacattaattaattgacctcaagagttgtattagtcatctcttagaac
tgtacatgcctctacctatagtatattaataatcacatcctctcaaagtt
acacacacttctttcactacacatctccgaaggctatcttatcaagtcgg
attattgtgagaaagatttatctaactaaatgaatgttataacacactgc
taaacagacagataaacatggagacaatgaacagggtgctaagattaaat
gcagaataacatatgattcttcagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_50986134_50987338
seq2: B6Ng01-061N10.g_68_1242 (reverse)

seq1  CCTGAAGAATCATAGTGTAATTTCTTTGGCATTTTAAACTCTATAAGCAC  50
      |||||||||||||| ||| | ||||   |||||| |     | | |||||
seq2  CCTGAAGAATCATA-TGTTA-TTCT---GCATTTAA-----TCTTAGCAC  40

seq1  ACATGGTCATTGTCTCCATGGTCTAATCTGGTCTTGTTTTAGCAAGTGTG  100
       | || ||||||||||||||   | |||| ||||   |||||| ||||||
seq2  -CCTGTTCATTGTCTCCATG--TTTATCT-GTCT--GTTTAGC-AGTGTG  83

seq1  TTTATAACATTTCATTTTAGTTAAGTAAAATCTTCTCACAATTAAATCCG  150
       |||||||| |||| ||||||||  ||||   ||||||||||  ||||||
seq2  -TTATAACA-TTCA-TTTAGTTAGATAAATCTTTCTCACAAT--AATCCG  128

seq1  ACTTTGAATAAGATAGCCTTTGGAGATGTGTAAGTGAAAGGAAGTGTGTG  200
      ||||   ||||||||||||| |||||||||| ||||||| ||||||||||
seq2  ACTT--GATAAGATAGCCTTCGGAGATGTGT-AGTGAAA-GAAGTGTGTG  174

seq1  TAACTTTTGAGAGGATGTGATTATTAAATATAACTTATAGGTAGAGGCAT  250
      |||| |||||||||||||||||||| ||||||   |||||||||||||||
seq2  TAAC-TTTGAGAGGATGTGATTATT-AATATA--CTATAGGTAGAGGCAT  220

seq1  GTACAGTTCTAAGAGATGACTAATACAACTCTTGAGGTCAATTAATTAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAGTTCTAAGAGATGACTAATACAACTCTTGAGGTCAATTAATTAAT  270

seq1  GTGCACCACTCCAGTTTAACCTTGGCTAAGACAAGTTGAAATGTACAGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCACCACTCCAGTTTAACCTTGGCTAAGACAAGTTGAAATGTACAGTC  320

seq1  ATATTAGATTTGGGTCAGTAGACTGACTTGGTTCTTCTTTTGGTAATTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTAGATTTGGGTCAGTAGACTGACTTGGTTCTTCTTTTGGTAATTTC  370

seq1  TAAATTTGGCATTTTATGAAACACAACATGTCTCTAACTTATTCTTAGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTTGGCATTTTATGAAACACAACATGTCTCTAACTTATTCTTAGTT  420

seq1  CCTTCATTCATGTATGCTATTTTAAAAAGAATAAATTCCACTTGGGAACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCATTCATGTATGCTATTTTAAAAAGAATAAATTCCACTTGGGAACA  470

seq1  GAACATCCTTAAAATTTGATCATAACTAATGTTCAACATGACTAGCTTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACATCCTTAAAATTTGATCATAACTAATGTTCAACATGACTAGCTTGT  520

seq1  TTCCTAACTAATATTGGTATTAGGAATACCTAGCTTGAATATAACATTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTAACTAATATTGGTATTAGGAATACCTAGCTTGAATATAACATTGA  570

seq1  CAATGAGGAAATGTGTTATAAACCAGATCTCTCAAAGCTGTGTTCACTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGAGGAAATGTGTTATAAACCAGATCTCTCAAAGCTGTGTTCACTAA  620

seq1  CTAAAAATGAAGAACTGTATTTCTGGAAGGTTGTGAAGAGCTTGGCAGCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAAATGAAGAACTGTATTTCTGGAAGGTTGTGAAGAGCTTGGCAGCC  670

seq1  CCCACCCATCCCTGTTAACTTGAAGGTGATCAATCTTCCTTTGAGTCAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACCCATCCCTGTTAACTTGAAGGTGATCAATCTTCCTTTGAGTCAGA  720

seq1  AAGACCTTCACAGAAAACACCAAGTCTGTTTATCTTTATTATTGAGGTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACCTTCACAGAAAACACCAAGTCTGTTTATCTTTATTATTGAGGTTT  770

seq1  TGCTTCCTCTTTGTCTGGAAAAAAAACTGTAAGTAAGGGTCATTTCATAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTCCTCTTTGTCTGGAAAAAAAACTGTAAGTAAGGGTCATTTCATAT  820

seq1  CTTAAAGCGAAGAACAATTAAAGGCAGAAATATTAAAATGGCAACTACAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAAGCGAAGAACAATTAAAGGCAGAAATATTAAAATGGCAACTACAA  870

seq1  ACCATCACCAAATCTTTTCCTAAATATTGAGTTTGGGTCACTGATATACC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATCACCAAATCTTTTCCTAAATATTGAGTTTGGGTCACTGATATACC  920

seq1  CTACTTAGTGAGGAAAAAAATTAAAAAGAAAGCAGAGAAGCAAATGTCAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTTAGTGAGGAAAAAAATTAAAAAGAAAGCAGAGAAGCAAATGTCAA  970

seq1  ACTTTCACTCACACAGTCACTATTAGTCTAAGCTAAATTTAAGAAAGCAT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTCACTCACACAGTCACTATTAGTCTAAGCTAAATTTAAGAAAGCAT  1020

seq1  GCTCAAAAGGTGATACTGAGGGAGACTTTATTAGGAAACAGTTGTAAATG  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAAAAGGTGATACTGAGGGAGACTTTATTAGGAAACAGTTGTAAATG  1070

seq1  TATGGACTATTATTGATCACTTTTGAGGTTATTAGTAGAAGGCACACTTG  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGACTATTATTGATCACTTTTGAGGTTATTAGTAGAAGGCACACTTG  1120

seq1  TGGCTGTTGGAATTAAATTTTAAGAAAATTCTGTTTGTGCTACAAACTAG  1200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTGTTGGAATTAAATTTTAAGAAAATTCTGTTTGTGCTACAAACTAG  1170

seq1  AATTC  1205
      |||||
seq2  AATTC  1175


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