BAC Information

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BAC

Clone NameB6Ng01-062B06
Chromosome1 (Build37)
Map Location 39,815,225 - 39,933,960
singlet/doubletdoublet
Overlap geneLOC100042065
Upstream geneLonrf2, Chst10, EG625775, Nms, Pdcl3, Npas2, LOC100041999, Rpl31, Tbc1d8, D1Bwg0212e, Rnf149, EG329126, Creg2, 4933400N17Rik
Downstream geneMap4k4, Il1r2, Il1r1, Il1rl2, Il1rl1, Il18r1, Il18rap, Slc9a4, Slc9a2, Mfsd9, Tmem182, Ppia-ps1_352.1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-062B06.bB6Ng01-062B06.g
ACCDH882584DH882585
length1,0601,107
definitionDH882584|Mus musculus domesticus DNA, BAC clone: B6Ng01-062B06, 5' end.DH882585|Mus musculus domesticus DNA, BAC clone: B6Ng01-062B06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(39,815,225 - 39,816,292)(39,932,825 - 39,933,960)
sequence
gaattctctggaaatcttgtttaaccatgtgactctgatctcccgggatg
atgagccggtccttcctttggcaggaagtggcggttggcttccacagtca
ggaattcttccccttgtgactgtgagtgtattgtcatagaaggagcgagc
agagctgagagtctgagaggtctgttcaggtccatgtggctgacacacga
gtccaagttcaaatgcatcattgatttaaagatagtctggtagttttttg
ttttgttttttaaatttaaattatttattatatgtaaataacctgtagct
gtcttcagacactccagaagagggcatcagatctctttacggatggttgt
gagccaccatgtggttgctgggatttgagctccagaccttcagaagagca
gtcagtgctcttaatcgctgagccatctcaccagcctagtctaatagttt
taaaaaatcatccttgaatattttagtctctgtccgtctggtagatggta
ggaatgtccttttctgtgcccatggtagtcaggcatggctgcaaagttcg
ctggggctgttgaaacttgagcagaagttgtgggaatctgtgtagttttc
catgttgtctcctccctgtgtcactgtgaccatggtggtttgggctagga
ggctcatctacttaggttcctacctcatggtagaaattcccccctcacac
gaactgaacacatagcaccaggaagacggaaacaattcctgtatcaagtc
accaaggcctggggggtagcattttcctgacacagggcctttccttttct
gactgacacagagaacctgaggcaggtgagaggccagatgggagggagtc
caaggcccacagcagacttggtactttgagtgttcaggataaagtgggtc
accacagccagagtgacccccagctagatggtttgtggtgtgtgctgact
gtagtcacagtggcagggaaggggagacagaaaaaaaaattgcaagaagg
aatgtttgctgttgctgagcagcttgacctcgagacagctcagtcccctc
cagaatgggt
gaattcctggaagacagagtggttaggaccgagttggtcgtgagcaaagg
ggtcttgttggaaactctggaccatgaaacaatcctgttcctccacacag
tgcatgtaattacacagagcaggcctggcgtttggggttttgttgttggt
tctttattttgttttctttcgtttttcatcacatagggcaagagaagaat
aaaatatcctcaacaacagaggaactgatatgtggaaaagagggggaacg
ttttgctagtaaaatataattaatcacacagtaaaaacctcatctgtata
tattattgatcttaataagtgtaatgaactgaaatttatgagttaaaagg
caaaaactggctcaaagaaaaagttaggcgggccgggcatggtggcacac
acctttaatcccagcacttgggaggcagagacaggcggatttctgagttg
gaggccagcctggtctacagagtaagttccaggacagccagggctacaca
gagaaaccctgtctcgaaaaaccaaaaaaaaaaaaaaaaaaaaggaaaag
aaaagaaaaagaaaaagttaggcattataactgcattataactagtagtt
gcacaatagctcaggctctgctgtgccagcctgggcttgccacctatggg
atgtatataaagtgaacatgtgaatgtatctgctctgctacctaatatat
aatgtttctgtgacttacagaccagataatgtgtggataatacctatact
ctgagaaagatagctcaatggttaagaatgctggctgcttttccagaggg
acctaggttcaatgtcctagcacccacataagcagttcataactgtctgt
aactcaggttccaagggatctacaccctcacacaaatgcgcataaaaaaa
attaataattattttttgaaagtatgtaaagtctctgcaactgtgtgatt
cagtattgttaaacaaaagacacctgaaacaaaatgatagctaagtttga
aatgcagaaataaaggggcaagtaatgtattgagaataaacggagcctgg
agtcaccacgcatgtagggtctggctgcctgatcccactacaagaatagt
gcttgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_39815225_39816292
seq2: B6Ng01-062B06.b_45_1104

seq1  GAATTCTCTGGAAATCTTGTTTAACCATGTGACTCTGATCTCCCGGGATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGGAAATCTTGTTTAACCATGTGACTCTGATCTCCCGGGATG  50

seq1  ATGAGCCGGTCCTTCCTTTGGCAGGAAGTGGCGGTTGGCTTCCACAGTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGCCGGTCCTTCCTTTGGCAGGAAGTGGCGGTTGGCTTCCACAGTCA  100

seq1  GGAATTCTTCCCCTTGTGACTGTGAGTGTATTGTCATAGAAGGAGCGAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATTCTTCCCCTTGTGACTGTGAGTGTATTGTCATAGAAGGAGCGAGC  150

seq1  AGAGCTGAGAGTCTGAGAGGTCTGTTCAGGTCCATGTGGCTGACACACGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCTGAGAGTCTGAGAGGTCTGTTCAGGTCCATGTGGCTGACACACGA  200

seq1  GTCCAAGTTCAAATGCATCATTGATTTAAAGATAGTCTGGTAGTTTTTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCAAGTTCAAATGCATCATTGATTTAAAGATAGTCTGGTAGTTTTTTG  250

seq1  TTTTGTTTTTTAAATTTAAATTATTTATTATATGTAAATAACCTGTAGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTTTTTAAATTTAAATTATTTATTATATGTAAATAACCTGTAGCT  300

seq1  GTCTTCAGACACTCCAGAAGAGGGCATCAGATCTCTTTACGGATGGTTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTCAGACACTCCAGAAGAGGGCATCAGATCTCTTTACGGATGGTTGT  350

seq1  GAGCCACCATGTGGTTGCTGGGATTTGAGCTCCAGACCTTCAGAAGAGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCACCATGTGGTTGCTGGGATTTGAGCTCCAGACCTTCAGAAGAGCA  400

seq1  GTCAGTGCTCTTAATCGCTGAGCCATCTCACCAGCCTAGTCTAATAGTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGTGCTCTTAATCGCTGAGCCATCTCACCAGCCTAGTCTAATAGTTT  450

seq1  TAAAAAATCATCCTTGAATATTTTAGTCTCTGTCCGTCTGGTAGATGGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAATCATCCTTGAATATTTTAGTCTCTGTCCGTCTGGTAGATGGTA  500

seq1  GGAATGTCCTTTTCTGTGCCCATGGTAGTCAGGCATGGCTGCAAAGTTCG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATGTCCTTTTCTGTGCCCATGGTAGTCAGGCATGGCTGCAAAGTTCG  550

seq1  CTGGGGCTGTTGAAACTTGAGCAGAAGTTGTGGGAATCTGTGTAGTTTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGGCTGTTGAAACTTGAGCAGAAGTTGTGGGAATCTGTGTAGTTTTC  600

seq1  CATGTTGTCTCCTCCCTGTGTCACTGTGACCATGGTGGTTTGGGCTAGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTTGTCTCCTCCCTGTGTCACTGTGACCATGGTGGTTTGGGCTAGGA  650

seq1  GGCTCATCTACTTAGGTTCCTACCTCATGGTAGAAATTCCCCCCTCACAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCATCTACTTAGGTTCCTACCTCATGGTAGAAATTCCCCCCTCACAC  700

seq1  GAACTGAACACATAGCACCAGGAAGACGGAAACAATTCCTGTATCAAGTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTGAACACATAGCACCAGGAAGACGGAAACAATTCCTGTATCAAGTC  750

seq1  ACCAAGGCCTGGGGGGTAGCATTTTCCTGACACAGGGCCTTTCCTTTTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAGGCCTGGGGGGTAGCATTTTCCTGACACAGGGCCTTTCCTTTTCT  800

seq1  GACTGACACAGAGAACCTGAGGCAGGTGAGAGGCCAGATGGGAGGGAGTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGACACAGAGAACCTGAGGCAGGTGAGAGGCCAGATGGGAGGGAGTC  850

seq1  CAAGGCCCACAGCAGACTTGGTACTTTTGAGTGTTCAGGATAAAGTGGGT  900
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  CAAGGCCCACAGCAGACTTGGTAC-TTTGAGTGTTCAGGATAAAGTGGGT  899

seq1  CACCACAGCCAGAGTGACCCCCAGCTAGGATGGTTTTGTGGTGTGTGCTG  950
      ||||||||||||||||||||||||||| ||||| ||||||||||||||||
seq2  CACCACAGCCAGAGTGACCCCCAGCTA-GATGG-TTTGTGGTGTGTGCTG  947

seq1  ACTGTTAGTCACAAGTGGCAGGGAAGGGGAAGACAGAAAAAAAAATTGCA  1000
      |||| ||||||| |||||||||||||||| ||||||||||||||||||||
seq2  ACTG-TAGTCAC-AGTGGCAGGGAAGGGG-AGACAGAAAAAAAAATTGCA  994

seq1  AGAAGGAATGTTTGCTGTGCCTGAGCAGCTTGACCTCAGAGACAGCTCAG  1050
      ||||||||||||||||||  ||||||||||||||||| ||||||||||||
seq2  AGAAGGAATGTTTGCTGTTGCTGAGCAGCTTGACCTC-GAGACAGCTCAG  1043

seq1  TCCCCTCCCAGAATGGGT  1068
      |||||| |||||||||||
seq2  TCCCCT-CCAGAATGGGT  1060

seq1: chr1_39932825_39933960
seq2: B6Ng01-062B06.g_70_1176 (reverse)

seq1  CACAAGCACATACTCTGTTAGTGGGATCAGGCAAGCACAGGCACCTTACA  50
      ||||||||| || |||  |||||||||||||| ||| |||  ||| ||||
seq2  CACAAGCAC-TATTCTTGTAGTGGGATCAGGC-AGC-CAG--ACCCTACA  45

seq1  CTGCTGTGCTGAACTCAAGGCTCCCTGTTTATTCTCATTACTATCTGCTT  100
       ||| ||| || |||| |||||||  ||||||||||| ||| || | |||
seq2  -TGC-GTGGTG-ACTCCAGGCTCC--GTTTATTCTCAATAC-AT-TACTT  88

seq1  TCCCCTCTTTATTTCTGCATTTTCAAACTTTAAGCCTATCATTTTGTTTC  150
       |||  ||||||||||||| ||||||||||  || |||||||||||||||
seq2  GCCC--CTTTATTTCTGCA-TTTCAAACTT--AG-CTATCATTTTGTTTC  132

seq1  AGGTGTCTTTTGTTTTAACAATAACTGAATTCAACACAGTTTGCAGGGAA  200
      |||||||||||| ||||||||| |||||||   |||||| |||||| | |
seq2  AGGTGTCTTTTG-TTTAACAAT-ACTGAAT--CACACAG-TTGCAGAG-A  176

seq1  CTTTACATACTTTTCAAAAAATAATTTATTTAATTTTATTTTATGCGCAT  250
      |||||||||| |||||||||||||||   |||||||| ||||||||||||
seq2  CTTTACATAC-TTTCAAAAAATAATT--ATTAATTTT-TTTTATGCGCAT  222

seq1  TGGTGTGAGGGTGTTAGATCCCTTGGAACCTGAGTTACAGACAGTTATGA  300
      | ||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TTGTGTGAGGGTG-TAGATCCCTTGGAACCTGAGTTACAGACAGTTATGA  271

seq1  ACTGCTTATGTGGGTGCTAGGACATTGAACCTAGGTCCCTCTGGAAAAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCTTATGTGGGTGCTAGGACATTGAACCTAGGTCCCTCTGGAAAAGC  321

seq1  AGCCAGCATTCTTAACCATTGAGCTATCTTTCTCAGAGTATAGGTATTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGCATTCTTAACCATTGAGCTATCTTTCTCAGAGTATAGGTATTAT  371

seq1  CCACACATTATCTGGTCTGTAAGTCACAGAAACATTATATATTAGGTAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACACATTATCTGGTCTGTAAGTCACAGAAACATTATATATTAGGTAGC  421

seq1  AGAGCAGATACATTCACATGTTCACTTTATATACATCCCATAGGTGGCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCAGATACATTCACATGTTCACTTTATATACATCCCATAGGTGGCAA  471

seq1  GCCCAGGCTGGCACAGCAGAGCCTGAGCTATTGTGCAACTACTAGTTATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAGGCTGGCACAGCAGAGCCTGAGCTATTGTGCAACTACTAGTTATA  521

seq1  ATGCAGTTATAATGCCTAACTTTTTCTTTTTCTTTTCTTTTCCTTTTTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAGTTATAATGCCTAACTTTTTCTTTTTCTTTTCTTTTCCTTTTTTT  571

seq1  TTTTTTTTTTTTTGGTTTTTCGAGACAGGGTTTCTCTGTGTAGCCCTGGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTTTGGTTTTTCGAGACAGGGTTTCTCTGTGTAGCCCTGGC  621

seq1  TGTCCTGGAACTTACTCTGTAGACCAGGCTGGCCTCCAACTCAGAAATCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCTGGAACTTACTCTGTAGACCAGGCTGGCCTCCAACTCAGAAATCC  671

seq1  GCCTGTCTCTGCCTCCCAAGTGCTGGGATTAAAGGTGTGTGCCACCATGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGTCTCTGCCTCCCAAGTGCTGGGATTAAAGGTGTGTGCCACCATGC  721

seq1  CCGGCCCGCCTAACTTTTTCTTTGAGCCAGTTTTTGCCTTTTAACTCATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGCCCGCCTAACTTTTTCTTTGAGCCAGTTTTTGCCTTTTAACTCATA  771

seq1  AATTTCAGTTCATTACACTTATTAAGATCAATAATATATACAGATGAGGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCAGTTCATTACACTTATTAAGATCAATAATATATACAGATGAGGT  821

seq1  TTTTACTGTGTGATTAATTATATTTTACTAGCAAAACGTTCCCCCTCTTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACTGTGTGATTAATTATATTTTACTAGCAAAACGTTCCCCCTCTTT  871

seq1  TCCACATATCAGTTCCTCTGTTGTTGAGGATATTTTATTCTTCTCTTGCC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACATATCAGTTCCTCTGTTGTTGAGGATATTTTATTCTTCTCTTGCC  921

seq1  CTATGTGATGAAAAACGAAAGAAAACAAAATAAAGAACCAACAACAAAAC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGTGATGAAAAACGAAAGAAAACAAAATAAAGAACCAACAACAAAAC  971

seq1  CCCAAACGCCAGGCCTGCTCTGTGTAATTACATGCACTGTGTGGAGGAAC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAACGCCAGGCCTGCTCTGTGTAATTACATGCACTGTGTGGAGGAAC  1021

seq1  AGGATTGTTTCATGGTCCAGAGTTTCCAACAAGACCCCTTTGCTCACGAC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATTGTTTCATGGTCCAGAGTTTCCAACAAGACCCCTTTGCTCACGAC  1071

seq1  CAACTCGGTCCTAACCACTCTGTCTTCCAGGAATTC  1136
      ||||||||||||||||||||||||||||||||||||
seq2  CAACTCGGTCCTAACCACTCTGTCTTCCAGGAATTC  1107