BAC Information

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BAC

Clone NameB6Ng01-062C04
Chromosome16 (Build37)1 (Build37)
Map Location 75,371,966 - 75,372,465104,304,237 - 104,305,356
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneRobo2, LOC665042
Downstream geneD930038D03Rik, Rbm11, Stch, LOC546667, Samsn1, 4930578N18Rik, LOC100039457, Nrip1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-062C04.bB6Ng01-062C04.g
ACCDH882622DH882623
length9321,100
definitionDH882622|Mus musculus domesticus DNA, BAC clone: B6Ng01-062C04, 5' end.DH882623|Mus musculus domesticus DNA, BAC clone: B6Ng01-062C04, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(75,371,966 - 75,372,465)(104,304,237 - 104,305,356)
sequence
gaattcactcggacaaacagatccttctatggcaaagcttttattgcttc
cttctcaggaagacccctgaacacagaaaatggcgctgcttatatagccc
gcagcgtgacgtttcagcacctgatgtggcgtaacagctcctgattcgtt
gctcgcccatcaccctattacttttttttttccaatttttattaggtatt
tagctcatttacatttccaatgctatacgaaaattcccccatacccaccc
acccccactcccctacccacctactccccctttttggccctggcattccc
ctgtactggggcatgtaaagtttgcttgtccaatgggcctctctttccag
tgatggccaactaggccatcttttgatacatatgcagctagagtcaagag
ctccggggtactggttagttcataatgttgttccacctatagggttgcag
atccctttagctccttgggtactttctctagctcctccattgggggccct
gtgatccatccattagctgactgtgagcatccacttctgtgtttgctagg
ccccggcctagtctcacaagagacagctacatctgggtccttttgataaa
atcttgctagtgtatgcaatggtgtcagcgtttggatgctgattatgggg
tggatccctggatatggcagtctctacatggtccatcctttcatctcagc
tccaaactttttctctgtaactccttccatgggtgttttgtttttattac
cctattactacgccctgagatgggcagtgactatgcgtgagttcactctc
gcacctgcgtacaaggcttgtttactagttaggcacagtggaagccagtg
ccatcttataatggcgattgctcacagcacagctctccacatgaagaagg
aagaagaagaagaaagaagaagaagaagaaga
gaattccctcttaagctctaataaactcccttcaaacttccaattaagtt
ctttcttaaattattctattaaggaggctaagaatcaaagaggagacttt
gatttccctagtattatctagtgactacaaagagattcccacaaccttcc
aataatattgtatgtgttcctgttcatgggtatgcttgtattgaatttat
atgtgcatgtggaggtcaatatgaaatatcttatggagttactctccact
ttactttgaaggtagggtctcacactgaatctggagctctgcaattcagc
tgggattgcagacatacactggcacacacagctctgtgtatggattcaag
tagtcaggctcatgttgttaggtctgtatagcaagaactctgcttgtagc
aatctctcacgtgccaccaacatcttcatttggattttcttttagacact
tagttttatctactgcagaatgtgctgtgattctcctataggtgattttc
tacctctgtcacatctataaaatttgagactttgtattaatattttgtga
tattgtttgttttctatttgatatcttattatatttttattttcattcat
tttattataagtatgttcagctattttatttttctatttctgtatttgaa
tctttgctagtatcttttttctggtttattaagaacaagtcttatttttt
caagaacattcattaataccactttttaatatataaatctgtgattcact
tataattttttcttggtgcggactatatgacagggttcagtgttaccttc
ttattcatggtttcccaaacatataagcaacactagataaggatttgaaa
aaggatccagaatcaccaaacctcatagtggctcagctcatatggacgta
ctggaaaggaatctgtgaagtatctcagtaaaatgacacaaagttctttg
tcttagtatgtatgagtgatttcagtcccgagacaagtgatcactgatca
acaacagtgtttcattctatataggtctgatgtccatctcattttctttt
gaataactcaccctatgtaacctgctagctggagtcaatatgtagaatag

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_75371966_75372465
seq2: B6Ng01-062C04.b_221_720 (reverse)

seq1  AGAGACTGCCATATCCAGGGAACCACCCCATAATCAGCATCCAAACGCTG  50
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  AGAGACTGCCATATCCAGGGATCCACCCCATAATCAGCATCCAAACGCTG  50

seq1  ACACCATTGCATACACTAGCAAGATTTTATTGAAAAGACCCAGATGTAGC  100
      ||||||||||||||||||||||||||||||  ||| ||||||||||||||
seq2  ACACCATTGCATACACTAGCAAGATTTTATCAAAAGGACCCAGATGTAGC  100

seq1  TGTCTCTTGTGAGACTATGCCGAGGCCTAGCAAACACAGAAGTGGATGCT  150
      ||||||||||||||||| |||| |||||||||||||||||||||||||||
seq2  TGTCTCTTGTGAGACTAGGCCGGGGCCTAGCAAACACAGAAGTGGATGCT  150

seq1  CACAGTCAGCTAATGGATGGATCACAGGGCTCCCAATGGAGGAGCTAGAG  200
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  CACAGTCAGCTAATGGATGGATCACAGGGCCCCCAATGGAGGAGCTAGAG  200

seq1  AAAGTACCCAAGGAGCTAAAGGGATCTGCAACCCTATAGGTGGAACAACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTACCCAAGGAGCTAAAGGGATCTGCAACCCTATAGGTGGAACAACA  250

seq1  TTATGAACTAACCAGTACCCCGGAGCTCTTGACTATAGCTGCATATGTAT  300
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TTATGAACTAACCAGTACCCCGGAGCTCTTGACTCTAGCTGCATATGTAT  300

seq1  CAAAAGATGGCCTAGTCGGCCATCACTGGAAAGAGAGGCCCATTGGACAC  350
      |||||||||||||||| |||||||||||||||||||||||||||||||| 
seq2  CAAAAGATGGCCTAGTTGGCCATCACTGGAAAGAGAGGCCCATTGGACAA  350

seq1  GCAAACTTTATATGCCCCAGTACAGGGGAACACCAGGGCCAAAAAGGGGG  400
      |||||||||| |||||||||||||||||||  ||||||||||||||||||
seq2  GCAAACTTTACATGCCCCAGTACAGGGGAATGCCAGGGCCAAAAAGGGGG  400

seq1  AGTGGGTGGGTAGGGGAGTGGGGGTAGGTGGGTATGGGGGACTTTTGGTA  450
      ||| ||||||||||||||||||||| ||||||||||||||| |||| |||
seq2  AGTAGGTGGGTAGGGGAGTGGGGGTGGGTGGGTATGGGGGAATTTTCGTA  450

seq1  TAGCATTGGAAATGTAAATGAGCTAAATACCTAATAAAAAAAGGAAAAAA  500
      ||||||||||||||||||||||||||||||||||||||||  ||||||||
seq2  TAGCATTGGAAATGTAAATGAGCTAAATACCTAATAAAAATTGGAAAAAA  500

seq1: chr1_104304237_104305356
seq2: B6Ng01-062C04.g_68_1167

seq1  GAATTCCCTCTTAAGCTCTAATAAACTCCCTTCAAACTTCCAATTAAGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTCTTAAGCTCTAATAAACTCCCTTCAAACTTCCAATTAAGTT  50

seq1  CTTTCTTAAATTATTCTATTAAGGAGGCTAAGAATCAAAGAGGAGACTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTTAAATTATTCTATTAAGGAGGCTAAGAATCAAAGAGGAGACTTT  100

seq1  GATTTCCCTAGTATTATCTAGTGACTACAAAGAGATTCCCACAACCTTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTCCCTAGTATTATCTAGTGACTACAAAGAGATTCCCACAACCTTCC  150

seq1  AATAATATTGTATGTGTTCCTGTTCATGGGTATGCTTGTATTGAATTTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATATTGTATGTGTTCCTGTTCATGGGTATGCTTGTATTGAATTTAT  200

seq1  ATGTGCATGTGGAGGTCAATATGAAATATCTTATGGAGTTACTCTCCACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGCATGTGGAGGTCAATATGAAATATCTTATGGAGTTACTCTCCACT  250

seq1  TTACTTTGAAGGTAGGGTCTCACACTGAATCTGGAGCTCTGCAATTCAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTTTGAAGGTAGGGTCTCACACTGAATCTGGAGCTCTGCAATTCAGC  300

seq1  TGGGATTGCAGACATACACTGGCACACACAGCTCTGTGTATGGATTCAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGATTGCAGACATACACTGGCACACACAGCTCTGTGTATGGATTCAAG  350

seq1  TAGTCAGGCTCATGTTGTTAGGTCTGTATAGCAAGAACTCTGCTTGTAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCAGGCTCATGTTGTTAGGTCTGTATAGCAAGAACTCTGCTTGTAGC  400

seq1  AATCTCTCACGTGCCACCAACATCTTCATTTGGATTTTCTTTTAGACACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTCTCACGTGCCACCAACATCTTCATTTGGATTTTCTTTTAGACACT  450

seq1  TAGTTTTATCTACTGCAGAATGTGCTGTGATTCTCCTATAGGTGATTTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTTTATCTACTGCAGAATGTGCTGTGATTCTCCTATAGGTGATTTTC  500

seq1  TACCTCTGTCACATCTATAAAATTTGAGACTTTGTATTAATATTTTGTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTCTGTCACATCTATAAAATTTGAGACTTTGTATTAATATTTTGTGA  550

seq1  TATTGTTTGTTTTCTATTTGATATCTTATTATATTTTTATTTTCATTCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGTTTGTTTTCTATTTGATATCTTATTATATTTTTATTTTCATTCAT  600

seq1  TTTATTATAAGTATGTTCAGCTATTTTATTTTTCTATTTCTGTATTTGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTATAAGTATGTTCAGCTATTTTATTTTTCTATTTCTGTATTTGAA  650

seq1  TCTTTGCTAGTATCTTTTTTCTGGTTTATTAAGAACAAGTCTTATTTTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGCTAGTATCTTTTTTCTGGTTTATTAAGAACAAGTCTTATTTTTT  700

seq1  CAAGAACATTCATTAATACCACTTTTTAATATATAAATCTGTGATTCACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAACATTCATTAATACCACTTTTTAATATATAAATCTGTGATTCACT  750

seq1  TATAATTTTTTCTTGGTGCGGACTATATGACAGGGTTCAGTGTTACCTTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATTTTTTCTTGGTGCGGACTATATGACAGGGTTCAGTGTTACCTTC  800

seq1  TTATTCATGGTTTCCCAAACATATAAGCAACACTAGATAAGGATTTGAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTCATGGTTTCCCAAACATATAAGCAACACTAGATAAGGATTTGAAA  850

seq1  AAGGATCCAGAATCACCAAACCTCATAGTGGCTCAGCTCATATGGACGTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGATCCAGAATCACCAAACCTCATAGTGGCTCAGCTCATATGGACGTA  900

seq1  CTGGAAAGGAATTCTGTGAAGTATCTCAGTAAAATGACACAAAGTTCTTT  950
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  CTGGAAAGGAA-TCTGTGAAGTATCTCAGTAAAATGACACAAAGTTCTTT  949

seq1  GTCCTTAGTATGTATTGAGGTGATTTCAGTCCCGAGGACAAGTGATTAAC  1000
      || ||||||||||| ||| |||||||||||||||| |||||||||| |  
seq2  GT-CTTAGTATGTA-TGA-GTGATTTCAGTCCCGA-GACAAGTGATCA--  993

seq1  CTGGTCCAACAACAGTGTTTCATTCTATATAGGTCTGATGTTCCATTCTC  1050
      ||| | |||||||||||||||||||||||||||||||||| |||| ||| 
seq2  CTGAT-CAACAACAGTGTTTCATTCTATATAGGTCTGATG-TCCA-TCT-  1039

seq1  CATTTTTTCTTTTTGAAATAAACTCACACTATGTAACACTGGCTAGCTTG  1100
      ||||||    |||||||   ||||||| ||||||||| || |||||| ||
seq2  CATTTT---CTTTTGAA--TAACTCACCCTATGTAAC-CT-GCTAGC-TG  1081

seq1  GAGTTCAATATGTAGAATAG  1120
      ||| ||||||||||||||||
seq2  GAG-TCAATATGTAGAATAG  1100