BAC Information

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BAC

Clone NameB6Ng01-062E08
Chromosome1 (Build37)
Map Location 56,283,320 - 56,284,422
singlet/doubletsinglet
Overlap genenone
Upstream geneRftn2, Mars2, LOC666793, Boll, EG632964, LOC667237, LOC626009, 9130227L01Rik
Downstream geneHsfy2, Satb2, EG329160, 9130024F11Rik, LOC100042869
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-062E08.bB6Ng01-062E08.g
ACCDH882722DH882723
length1,0871,245
definitionDH882722|Mus musculus domesticus DNA, BAC clone: B6Ng01-062E08, 5' end.DH882723|Mus musculus domesticus DNA, BAC clone: B6Ng01-062E08, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcataacatttatgtagacaaatagaagagatgtattcagaagtaa
ctcatgtaaaggctgagaagtgccacagtctgccttctttgaactgcaga
cagagaaaagccagagacagtgatacagctcaaacatgagaccctagagc
aaagaccatcaataggacaagcccaggcttccatctgaagacacaaggtc
cgagaacactggtgcaaaggacaagagatggcttcagatcaaagagaggt
tcatcccttgcttgattcttcccttctagtcagattttccatgccatgga
ctttgtccacaacatccttttctacatattccaaaaccaatcccttgtgc
aaacaatttcacaatgatacccataaataatgttttttttttttttttgc
cagctatctgggcatcctctcacccaaacaaatagacacattatcgatac
tctttgcttcctagggaatccagtctatagcagcaatttcaagggataaa
aggaccttaagtgtgcagcaactacagaccctgctccaaaactcatcagc
tgagagataaatgtattcattattctccatgtcccacatgctaggcagca
ctggaagggttaaacagatttagtgactaacaagtagaattatttttaaa
agaaaaatcataaaacactatgagccatgctatgcaaatcgccctgaaag
cgatggcagtaaagggctgcctactcaagagcatcaatccatacccacag
gcctctgcaattagtctaccatggtgaaattgcagcgacagacacatgtt
tcattcttcatttctgcatagcctcaacatttgaaaatttcctctcttcc
tcagtaagaggcatttcattagatcagaatgacagctatatcgtaagagt
cttaaagcaaaatgcagatcacaagtgggaacgctatgcaaatggtgatt
aaattaattatgaggtctttttaaaatttcaaacacattatgtaatatcc
ccgatagaataggaatctgatgttttcttcaatgctacagcactaggtag
ggtgtggtgaagtcgatgctgattgattaatagtctc
gaattctttataaattttgggtattagaactctgtcagatgtagggttgg
taaagattctttgccattttgtcctattgacagtgacctttgccttacaa
aagcttttaagtttcataaggttccatttatcaactgttgatgttagagc
ctgaatagttggtgttctgttcaggaaattgtgtcttgtaccaatgtgtt
caacttatttctcactttctcttctgtaagctttaatgttcccagtttta
tgttgatgtacttagtctatttggagttgagttttgtgcagggtggtaaa
tatgtatctatttgcattcttccacctgtagacatctagttaaaccagca
ccatctgttggatatgctttctctattccattgtatggatttagctcttt
atcaaaaaaatcaataaccatgtaggtttatttctgagtcttcaaatatt
ttcctttgatcaacatgtctgtttctgtaccatgcagtttttaatcacta
gtcctcaatactacagcctgaggtcaggaatggtgattgattcttcctgc
agttgttttattgttcaggattgtttctgcaattctgggttttttgtttt
tctatataaaattgagaattgctattttaaggtctatacaatttgcatta
gaatttttataggtattgcattgaatctgtagaatgcttttggtaagatg
accatattcactatgtttaatctgacctatccatgagtgtgggagatctt
tccatcttctgatatcttcttaaattctttcttcaggactagaagttttt
gtcatatagattgtttacttgcttggttagaatttcaccaaggtatttta
tattatttgtggatattttaaagagtttgatttccctaatttctttcttg
gcccatgtatcattctataaggagagctacttatttctttgattatttca
tatccagacactttgctgaagtgttatcaactgtatgtgttctctgaaag
atttcattcatatgatcagtaggcttcatccagtgaagaggcaggaatgt
catatatgaaaacatcacgcatccatcattaacggactgaagaaaaagct
ccctgatgtactcatagatgtggaaagctttgaaaatcatatcccctctg
taagtgtgagattcgggtacagcttaactcacttcagcatgcgcatccat
gcatacactagtgaggagctcagaatctcctagattggcgactac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_56283320_56284422
seq2: B6Ng01-062E08.b_48_1134 (reverse)

seq1  GAGACTATTAATACAAATCAGCATCTGACTTCAACACACCCCTACCTAGT  50
      ||||||||||||   |||||||||| ||||||| |||| |||||||||||
seq2  GAGACTATTAAT--CAATCAGCATC-GACTTCACCACA-CCCTACCTAGT  46

seq1  GCTGTTAGCATTTGAAAGAAAAACATTCAGATTCCTATTCTATCGGGGAA  100
      |||| ||||| |||||   |||||| |||||||||||||||||||||| |
seq2  GCTG-TAGCA-TTGAA--GAAAACA-TCAGATTCCTATTCTATCGGGG-A  90

seq1  TATTAACATAATGTGGTTTTGAAAATTTTAAAAAGACCTCATAATTAATT  150
      |||| ||||||||||  |||| ||||||||||||||||||||||||||||
seq2  TATT-ACATAATGTG--TTTG-AAATTTTAAAAAGACCTCATAATTAATT  136

seq1  TAATCACCATTTTGCATAGCGTTCCCACTTGTGATCTGCATTTTTGCTTT  200
      ||||||||| |||||||||||||||||||||||||||||| |||||||||
seq2  TAATCACCA-TTTGCATAGCGTTCCCACTTGTGATCTGCA-TTTTGCTTT  184

seq1  AAGACTCTTACGATATAGCTGTCATTCTGATCTAATGAAATGCCTCTTAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACTCTTACGATATAGCTGTCATTCTGATCTAATGAAATGCCTCTTAC  234

seq1  TGAGGAAGAGAGGAAATTTTCAAATGTTGAGGCTATGCAGAAATGAAGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGAAGAGAGGAAATTTTCAAATGTTGAGGCTATGCAGAAATGAAGAA  284

seq1  TGAAACATGTGTCTGTCGCTGCAATTTCACCATGGTAGACTAATTGCAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAACATGTGTCTGTCGCTGCAATTTCACCATGGTAGACTAATTGCAGA  334

seq1  GGCCTGTGGGTATGGATTGATGCTCTTGAGTAGGCAGCCCTTTACTGCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTGTGGGTATGGATTGATGCTCTTGAGTAGGCAGCCCTTTACTGCCA  384

seq1  TCGCTTTCAGGGCGATTTGCATAGCATGGCTCATAGTGTTTTATGATTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGCTTTCAGGGCGATTTGCATAGCATGGCTCATAGTGTTTTATGATTTT  434

seq1  TCTTTTAAAAATAATTCTACTTGTTAGTCACTAAATCTGTTTAACCCTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTAAAAATAATTCTACTTGTTAGTCACTAAATCTGTTTAACCCTTC  484

seq1  CAGTGCTGCCTAGCATGTGGGACATGGAGAATAATGAATACATTTATCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGCTGCCTAGCATGTGGGACATGGAGAATAATGAATACATTTATCTC  534

seq1  TCAGCTGATGAGTTTTGGAGCAGGGTCTGTAGTTGCTGCACACTTAAGGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCTGATGAGTTTTGGAGCAGGGTCTGTAGTTGCTGCACACTTAAGGT  584

seq1  CCTTTTATCCCTTGAAATTGCTGCTATAGACTGGATTCCCTAGGAAGCAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTATCCCTTGAAATTGCTGCTATAGACTGGATTCCCTAGGAAGCAA  634

seq1  AGAGTATCGATAATGTGTCTATTTGTTTGGGTGAGAGGATGCCCAGATAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTATCGATAATGTGTCTATTTGTTTGGGTGAGAGGATGCCCAGATAG  684

seq1  CTGGCAAAAAAAAAAAAAAAACATTATTTATGGGTATCATTGTGAAATTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCAAAAAAAAAAAAAAAACATTATTTATGGGTATCATTGTGAAATTG  734

seq1  TTTGCACAAGGGATTGGTTTTGGAATATGTAGAAAAGGATGTTGTGGACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCACAAGGGATTGGTTTTGGAATATGTAGAAAAGGATGTTGTGGACA  784

seq1  AAGTCCATGGCATGGAAAATCTGACTAGAAGGGAAGAATCAAGCAAGGGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCCATGGCATGGAAAATCTGACTAGAAGGGAAGAATCAAGCAAGGGA  834

seq1  TGAACCTCTCTTTGATCTGAAGCCATCTCTTGTCCTTTGCACCAGTGTTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACCTCTCTTTGATCTGAAGCCATCTCTTGTCCTTTGCACCAGTGTTC  884

seq1  TCGGACCTTGTGTCTTCAGATGGAAGCCTGGGCTTGTCCTATTGATGGTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGACCTTGTGTCTTCAGATGGAAGCCTGGGCTTGTCCTATTGATGGTC  934

seq1  TTTGCTCTAGGGTCTCATGTTTGAGCTGTATCACTGTCTCTGGCTTTTCT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTCTAGGGTCTCATGTTTGAGCTGTATCACTGTCTCTGGCTTTTCT  984

seq1  CTGTCTGCAGTTCAAAGAAGGCAGACTGTGGCACTTCTCAGCCTTTACAT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTGCAGTTCAAAGAAGGCAGACTGTGGCACTTCTCAGCCTTTACAT  1034

seq1  GAGTTACTTCTGAATACATCTCTTCTATTTGTCTACATAAATGTTATGAA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTACTTCTGAATACATCTCTTCTATTTGTCTACATAAATGTTATGAA  1084

seq1  TTC  1103
      |||
seq2  TTC  1087