BAC Information

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BAC

Clone NameB6Ng01-062I11
Chromosome1 (Build37)
Map Location 144,905,060 - 145,045,550
singlet/doubletdoublet
Overlap geneLOC545369
Upstream geneLOC639376
Downstream geneCdc73, B3galt2, LOC623138, Glrx2, Trove2, Uchl5, Rgs2, Rgs13
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-062I11.bB6Ng01-062I11.g
ACCDH882897DH882898
length1,1491,127
definitionDH882897|Mus musculus domesticus DNA, BAC clone: B6Ng01-062I11, 5' end.DH882898|Mus musculus domesticus DNA, BAC clone: B6Ng01-062I11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(144,905,060 - 144,906,235)(145,044,408 - 145,045,550)
sequence
gaattctgtgtattgagcttggctcactaatgacagtgcagatagctttc
cacaacagtgtttttatttctgtgggaaatgctcacaagaatgcaatcat
tagatcttatcagggcttcgcatttagatttttgaagaagcatattgttt
tctaaactggctatgtaaacttacatttacatcagtagtggactgagagc
cattaccccatttccatatatgcacctactgtggcattaaacagagtcat
tctaaccagtggcttttgagggagatatatacatatataatatatatatt
ctactgtagattttaaatgatcggcccaatgtcaatgaatggaaaattgg
gaggaaatgcaagtagaatgtcactgcatgattgctcattgtgtgaacat
aaatccaagaatagagaaagaagtcagatacagtaagtatgaggaactat
ttctcctcattttactcttaagatcatgtgtttacttttaagttcattat
taattcctaaaagtgcctatattaacagctactacacaaatttcttggga
ttttgcaattatctcctgtcagttagtataagccaattttcatgaacata
acctatacattgatacttaagactttacgttttacaaaggttaaccatgc
tgctttttgctataaaagcaaattttctattaatgaaggttaaaaacaaa
actgccccactccttactctggcatatctgtgtagacaaacatgtggtct
tatagaatcaaacatcagtggtacaacaacttgtgaatagacatgataaa
gtaaatggggaaaatccatgaggcttcaactcagcactaagaacggtagg
caagtgagaagagatgggagcaggagagatggaaacctcttctgagcaca
ccaattcattgtccagtgccaaacagccagacctaaaacaaaatacaagt
aacattataagtgatattcaggaatacatatgtatatacataatatcatg
catacattagcaaaaggaggcattaatttgaaagaacggtagggtatatg
aaagggtttgaggaagaaaggaacgcctgataatgtaataaatactgatc
tcgaataaattatgaaaacgaactttgtactgattgagcctggagaata
gaattctatggaacagaaggtacagatagttgtgagttggcatgtgggtg
ctggaaacggaatttagctcttctacaagagcaatgagttcttataacac
tgagccatctcaccagccctgataatgcaaatcttgtaattcactttgga
tactttcaaccaacatgatctccaaaattatttacaaaacttccaaagat
gcaatttcctactgcgggtattaactaggatgccttgtgtactctgaggg
caaatctaaaatattattttaatgtattttttaatactacacattgtaca
gccttgtaacagaaagcctactatgactccaagtgactaatataaagaag
taaacagccatctttgatgtatgttggttaaaaactgtgacaactttatg
acttagcatttatcttttgtaattgtaccagtgttccagtccaaagggat
gtgattttgaagcagagaaaagcagggatctactaaagtgatctttagaa
agagggatgaataattcaactttataaaaagcagtctataaattctgaag
atactaaaagaaatcaggtacccttgtgttgttttcaatctatagtcact
gaaaaacaccaccttttcttttgacctctcttcatggatgtgtgcatctg
gtctattcatagttctgtatcatcaacacttgagcaggtgtgatgtctcc
tgctgcacttaggaggacagggttgtatttaagagtgcaggcacagctgc
acatgctcttaaatgaagactaaaatctactgtataaatcacccacagaa
cagtgcaccattagttcttgatgccagtttgaggcagaataaaatttctt
gcttcctatcagtatattataaaatactgaaatttattttgatcatatag
taaatcacacaggcccagaagggttacaaattaagcaataagaatgcaga
agatggacttcctagtagcagagacattgttagttttcctttttatattt
tgtattatagtgtagaaataagttgctgggagcatggtctcagtgattaa
aaaaggaactaagatgaaatacataaaatcatttaaagttctggagctct
ttctgttgacttgggatattccactgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_144905060_144906235
seq2: B6Ng01-062I11.b_42_1190

seq1  GAATTCTGTGTATTGAGCTTGGCTCACTAATGACAGTGCAGATAGCTTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTGTATTGAGCTTGGCTCACTAATGACAGTGCAGATAGCTTTC  50

seq1  CACAACAGTGTTTTTATTTCTGTGGGAAATGCTCACAAGAATGCAATCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAACAGTGTTTTTATTTCTGTGGGAAATGCTCACAAGAATGCAATCAT  100

seq1  TAGATCTTATCAGGGCTTCGCATTTAGATTTTTGAAGAAGCATATTGTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATCTTATCAGGGCTTCGCATTTAGATTTTTGAAGAAGCATATTGTTT  150

seq1  TCTAAACTGGCTATGTAAACTTACATTTACATCAGTAGTGGACTGAGAGC  200
      |||||||||||||||||||||||||||||||||||||||           
seq2  TCTAAACTGGCTATGTAAACTTACATTTACATCAGTAGTNNNNNNNNNNN  200

seq1  CATTACCCCATTTCCATATATGCACCTACTGTGGCATTAAACAGAGTCAT  250
            ||||||||||||||||||||||||||||||||||||||||||||
seq2  NNNNNNCCCATTTCCATATATGCACCTACTGTGGCATTAAACAGAGTCAT  250

seq1  TCTAACCAGTGGCTTTTGAGGGAGATATATACATATATAATATATATATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAACCAGTGGCTTTTGAGGGAGATATATACATATATAATATATATATT  300

seq1  CTACTGTAGATTTTAAATGATCGGCCCAATGTCAATGAATGGAAAATTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTGTAGATTTTAAATGATCGGCCCAATGTCAATGAATGGAAAATTGG  350

seq1  GAGGAAATGCAAGTAGAATGTCACTGCATGATTGCTCATTGTGTGAACAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAAATGCAAGTAGAATGTCACTGCATGATTGCTCATTGTGTGAACAT  400

seq1  AAATCCAAGAATAGAGAAAGAAGTCAGATACAGTAAGTATGAGGAACTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCCAAGAATAGAGAAAGAAGTCAGATACAGTAAGTATGAGGAACTAT  450

seq1  TTCTCCTCATTTTACTCTTAAGATCATGTGTTTACTTTTAAGTTCATTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCTCATTTTACTCTTAAGATCATGTGTTTACTTTTAAGTTCATTAT  500

seq1  TAATTCCTAAAAGTGCCTATATTAACAGCTACTACACAAATTTCTTGGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTCCTAAAAGTGCCTATATTAACAGCTACTACACAAATTTCTTGGGA  550

seq1  TTTTGCAATTATCTCCTGTCAGTTAGTATAAGCCAATTTTCATGAACATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGCAATTATCTCCTGTCAGTTAGTATAAGCCAATTTTCATGAACATA  600

seq1  ACCTATACATTGATACTTAAGACTTTACGTTTTACAAAGGTTAACCATGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTATACATTGATACTTAAGACTTTACGTTTTACAAAGGTTAACCATGC  650

seq1  TGCTTTTTGCTATAAAAGCAAATTTTCTATTAATGAAGGTTAAAAACAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTTTGCTATAAAAGCAAATTTTCTATTAATGAAGGTTAAAAACAAA  700

seq1  ACTGCCCCACTCCTTACTCTGGCATATCTGTGTAGACAAACATGTGGTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCCCCACTCCTTACTCTGGCATATCTGTGTAGACAAACATGTGGTCT  750

seq1  TATAGAATCAAACATCAGTGGTACAACAACTTGTGAATAGACATGATAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGAATCAAACATCAGTGGTACAACAACTTGTGAATAGACATGATAAA  800

seq1  GTAAATGGGGAAAATCCATGAGGCTTCAACTCAGCACTAAGAACGGTAGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAATGGGGAAAATCCATGAGGCTTCAACTCAGCACTAAGAACGGTAGG  850

seq1  CAAGTGAGAAGAGATGGGAGCAGGAGAGATGGAAACCTCTTCTGAGCACA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTGAGAAGAGATGGGAGCAGGAGAGATGGAAACCTCTTCTGAGCACA  900

seq1  CCAATTCATTGTCCAGTGCCAAACAGCCAGACCTAAAAACAAAAATACAA  950
      ||||||||||||||||||||||||||||||||||||||   |||||||||
seq2  CCAATTCATTGTCCAGTGCCAAACAGCCAGACCTAAAA--CAAAATACAA  948

seq1  GTAACATTATAAGGTGATATTCAGGAATACATATGTATATACATAATATC  1000
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  GTAACATTATAA-GTGATATTCAGGAATACATATGTATATACATAATATC  997

seq1  ATGCAATACAATTAGCAAAAAGGGAGGGCATTAATTTGAACAGAACGGGT  1050
      |||| |||| ||||||||||  ||| |||||||||||||| ||||| |||
seq2  ATGC-ATAC-ATTAGCAAAA--GGA-GGCATTAATTTGAA-AGAAC-GGT  1040

seq1  AGGGGTATATGAAAGGGTTTGAAGGAAAGAAAGAGACGACCTGTAATAAT  1100
      | ||||||||||||||||||||  | |||||||  ||| ||||  |||||
seq2  A-GGGTATATGAAAGGGTTTGA--GGAAGAAAGGAACG-CCTG--ATAAT  1084

seq1  GTAATTATATACTGATCTCAAAAATAAAATTATATGAAAAAACAGAACTA  1150
      |||| || |||||||||||   ||||||    ||||||||    ||||| 
seq2  GTAA-TAAATACTGATCTC--GAATAAA---TTATGAAAA---CGAACTT  1125

seq1  TGTACTGATTGTAGCCACTGAGAATA  1176
      ||||||||||| ||||   |||||||
seq2  TGTACTGATTG-AGCC-TGGAGAATA  1149

seq1: chr1_145044408_145045550
seq2: B6Ng01-062I11.g_68_1194 (reverse)

seq1  GCAGTGAGAATATCCCAGAAGTCAACAGAAAGAGCCTCGCAGAAACTTTT  50
      |||||| |||||||||  |||||||||||||||| ||| |||||   |||
seq2  GCAGTG-GAATATCCC--AAGTCAACAGAAAGAG-CTC-CAGAA--CTTT  43

seq1  AAATGATATTATGTATTTCATTCTAGTTTCCTTTTTTTAAATCACTGAGA  100
      ||||||| |||||||||||||  ||| ||||||||||  |||||||||| 
seq2  AAATGATTTTATGTATTTCATCTTAG-TTCCTTTTTT--AATCACTGAG-  89

seq1  ACCATGTCTCCAGCAACTTTATGTCTACACTATAATACAAAATATAAAAA  150
      ||||||   |||||||| |||| |||||||||||||||||||||||||||
seq2  ACCATGCTCCCAGCAAC-TTATTTCTACACTATAATACAAAATATAAAAA  138

seq1  GGAAAAACTAACAATGTCTCCTGCTACTAGGAAGTCCATCTTCTGCATTC  200
      || |||||||||||||||| ||||||||||||||||||||||||||||||
seq2  GG-AAAACTAACAATGTCT-CTGCTACTAGGAAGTCCATCTTCTGCATTC  186

seq1  TTATTGCTTAATTTGTAACCCTTCTGGGGCCTGTGTGATTTACTATATGA  250
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TTATTGCTTAATTTGTAACCCTTCT-GGGCCTGTGTGATTTACTATATGA  235

seq1  TCAAAATAAATTTCAGTATTTTATAATATACCTGATAGGAAGCAAGAAAT  300
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TCAAAATAAATTTCAGTATTTTATAATATA-CTGATAGGAAGCAAGAAAT  284

seq1  TTTATTCTGCCTCAAACTGGCATCAAGAACTAATGGTGCACTGTTCTGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTCTGCCTCAAACTGGCATCAAGAACTAATGGTGCACTGTTCTGTG  334

seq1  GGTGATTTATACAGTAGATTTTAGTCTTCATTTAAGAGCATGTGCAGCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGATTTATACAGTAGATTTTAGTCTTCATTTAAGAGCATGTGCAGCTG  384

seq1  TGCCTGCACTCTTAAATACAACCCTGTCCTCCTAAGTGCAGCAGGAGACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGCACTCTTAAATACAACCCTGTCCTCCTAAGTGCAGCAGGAGACA  434

seq1  TCACACCTGCTCAAGTGTTGATGATACAGAACTATGAATAGACCAGATGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACACCTGCTCAAGTGTTGATGATACAGAACTATGAATAGACCAGATGC  484

seq1  ACACATCCATGAAGAGAGGTCAAAAGAAAAGGTGGTGTTTTTCAGTGACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATCCATGAAGAGAGGTCAAAAGAAAAGGTGGTGTTTTTCAGTGACT  534

seq1  ATAGATTGAAAACAACACAAGGGTACCTGATTTCTTTTAGTATCTTCAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGATTGAAAACAACACAAGGGTACCTGATTTCTTTTAGTATCTTCAGA  584

seq1  ATTTATAGACTGCTTTTTATAAAGTTGAATTATTCATCCCTCTTTCTAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATAGACTGCTTTTTATAAAGTTGAATTATTCATCCCTCTTTCTAAA  634

seq1  GATCACTTTAGTAGATCCCTGCTTTTCTCTGCTTCAAAATCACATCCCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCACTTTAGTAGATCCCTGCTTTTCTCTGCTTCAAAATCACATCCCTT  684

seq1  TGGACTGGAACACTGGTACAATTACAAAAGATAAATGCTAAGTCATAAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACTGGAACACTGGTACAATTACAAAAGATAAATGCTAAGTCATAAAG  734

seq1  TTGTCACAGTTTTTAACCAACATACATCAAAGATGGCTGTTTACTTCTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCACAGTTTTTAACCAACATACATCAAAGATGGCTGTTTACTTCTTT  784

seq1  ATATTAGTCACTTGGAGTCATAGTAGGCTTTCTGTTACAAGGCTGTACAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTAGTCACTTGGAGTCATAGTAGGCTTTCTGTTACAAGGCTGTACAA  834

seq1  TGTGTAGTATTAAAAAATACATTAAAATAATATTTTAGATTTGCCCTCAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTAGTATTAAAAAATACATTAAAATAATATTTTAGATTTGCCCTCAG  884

seq1  AGTACACAAGGCATCCTAGTTAATACCCGCAGTAGGAAATTGCATCTTTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACACAAGGCATCCTAGTTAATACCCGCAGTAGGAAATTGCATCTTTG  934

seq1  GAAGTTTTGTAAATAATTTTGGAGATCATGTTGGTTGAAAGTATCCAAAG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTTTTGTAAATAATTTTGGAGATCATGTTGGTTGAAAGTATCCAAAG  984

seq1  TGAATTACAAGATTTGCATTATCAGGGCTGGTGAGATGGCTCAGTGTTAT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTACAAGATTTGCATTATCAGGGCTGGTGAGATGGCTCAGTGTTAT  1034

seq1  AAGAACTCATTGCTCTTGTAGAAGAGCTAAATTCCGTTTCCAGCACCCAC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAACTCATTGCTCTTGTAGAAGAGCTAAATTCCGTTTCCAGCACCCAC  1084

seq1  ATGCCAACTCACAACTATCTGTACCTTCTGTTCCATAGAATTC  1143
      |||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCAACTCACAACTATCTGTACCTTCTGTTCCATAGAATTC  1127