BAC Information

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BAC

Clone NameB6Ng01-062K24
Chromosome1 (Build37)
Map Location 17,300,081 - 17,434,994
singlet/doubletdoublet
Overlap geneLOC383495, Rbm6-ps1, Ppia-ps1_125.1
Upstream geneStau2, Ube2w, Tceb1, LOC665480, Tmem70, Ly96, LOC100040056, LOC665496, EG545306, Jph1, Gdap1
Downstream genePi15, Crispld1, LOC665564, LOC100040126, Crisp4, EG574082, EG654460, Defb17
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-062K24.bB6Ng01-062K24.g
ACCDH883009DH883010
length1,0361,054
definitionDH883009|Mus musculus domesticus DNA, BAC clone: B6Ng01-062K24, 5' end.DH883010|Mus musculus domesticus DNA, BAC clone: B6Ng01-062K24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(17,300,081 - 17,301,117)(17,433,932 - 17,434,994)
sequence
gaattcttctgacaaatggagattccctacaaatacttaaaagaacagcc
aagttatactcatatgcaagaatttaccaaggcctaggaaagaggggggt
tgtggtattgcattattcattattcattctgctagagcagaaccctctgg
tgctttcacaaggctcaaagaaatagcataaattgtgactagggtgtgaa
atccttatgtgtcattagcagactctaggcatggctgttttatctttact
gtaaacattacctggtttctgtcagtcctttgaagtcatctccttgtttt
gtttcagataatttctgtgtaccttgcctgctgtgacatcctactccttt
gttttctgaattatatataactgatgctaactttgacaaatatacattca
ggttcagcactcttgtgtctgcttctgtttgtcaattctctttgcccatc
tgtctgaaaccctgaaacagattgggggtgggggggcggcgactgagacc
agtccgtggcaacttttagttttaattgttctttagggatcttctaagaa
ggagctcctcttcctacaagccattgggtaggatcccttcaatcaatggt
ttcttcagagcagaaaggataaaaatcccagcttgccatttgaattgctt
tagttaaagagcagcttaagtatatgtgaaaagtatgttttcatttttct
aatagcttcattcttcttaggagaaagaaggcccaaatggccacagtgat
ggtcctacagatcgacaaacataatgtgttaattagcaggattcctatat
ctataactgtggagaagaaaacaactttttaggaaaactattactttatt
atcatatttatatatgtaagattattgtgagtcttgtgctttctctattt
ttacattaatttcataggtataatttacaagattgtatttaaacatccta
tttgaattctgtaaattcccaatgactgtggaaactggcatttatttctt
tagcttataaagtggatctcaacgatattatgattt
gaattcttcttccttgtaatagtataagaataattgagatcaaaaccatt
tgatggaggtagcattactattatcaatttataatcttacttcacagagg
tatcatctgtaactcagctccttaagggcaactatatttttctttatata
tgttagctccatcatctgaaaaagaattaagatgtatgttcttacatcac
agagtctgtaggaaatcaagagcattttcagtatagtgaaagggaaacac
tagtaaatttttggtgctactgtaactagcaaaattccaaatataatata
ttcttgtatttatttctattattctgatatatgatttaatgcaaaaaata
tttggaaaatattttaaaacatatccttttacattttagaaaccattcat
tcagttatgtctttataaccatctatctgagatggttacaatgataaata
ggtatttcaatttgaccaagaaaagactaaaacaaagggacattgagctg
catttagattgggtctttccatctcagttaacctaatctagaaaatccct
cacacatatatccaaagaatcttgttcttaaaagatagtgcaagaaaatg
tcaattaaatttataaacacaatatattctggtagttgtgttttggtatt
tatttatttagtattattttacataacagcaatcttatggaagcttgtca
gcataaaatgttattctttatacctctgttttgtcagtctcttcatcagc
catcctcttcatctacatggataataaatgaattttagaaactcattatg
tctttcctagatgtttcattgcaaagtacttttaccaaatgctagttata
catctggctcaatactgaactccaactacaaaaagaatgcatggctaaaa
ccttgtaggggttcacattctccaaagaagcatagtcggaatcacctaat
catggtatttcagtagtagtttagctagaatcaaacataagagttataaa
gaatagttatagagatgctatgattcaaagactgctataatctcacatag
attt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_17300081_17301117
seq2: B6Ng01-062K24.b_65_1087

seq1  AAATGGAGATTCCCTACAAATACTTAAAAGAACAGCCAAGTTATACTCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGGAGATTCCCTACAAATACTTAAAAGAACAGCCAAGTTATACTCAT  50

seq1  ATGCAAGAATTTACCAAGGCCTAGGAAAGAGGGGGGTTGTGGTATTGCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAAGAATTTACCAAGGCCTAGGAAAGAGGGGGGTTGTGGTATTGCAT  100

seq1  TATTCATTATTCATTCTGCTAGAGCAGAACCCTCTGGTGCTTTCACAAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCATTATTCATTCTGCTAGAGCAGAACCCTCTGGTGCTTTCACAAGG  150

seq1  CTCAAAGAAATAGCATAAATTGTGACTAGGGTGTGAAATCCTTATGTGTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAAGAAATAGCATAAATTGTGACTAGGGTGTGAAATCCTTATGTGTC  200

seq1  ATTAGCAGACTCTAGGCATGGCTGTTTTATCTTTACTGTAAACATTACCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGCAGACTCTAGGCATGGCTGTTTTATCTTTACTGTAAACATTACCT  250

seq1  GGTTTCTGTCAGTCCTTTGAAGTCATCTCCTTGTTTTGTTTCAGATAATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTCTGTCAGTCCTTTGAAGTCATCTCCTTGTTTTGTTTCAGATAATT  300

seq1  TCTGTGTACCTTGCCTGCTGTGACATCCTACTCCTTTGTTTTCTGAATTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGTACCTTGCCTGCTGTGACATCCTACTCCTTTGTTTTCTGAATTA  350

seq1  TATATAACTGATGCTAACTTTGACAAATATACATTCAGGTTCAGCACTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATAACTGATGCTAACTTTGACAAATATACATTCAGGTTCAGCACTCT  400

seq1  TGTGTCTGCTTCTGTTTGTCAATTCTCTTTGCCCATCTGTCTGAAACCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTCTGCTTCTGTTTGTCAATTCTCTTTGCCCATCTGTCTGAAACCCT  450

seq1  GAAACAGATTGGGGGTGGGGGGGCGGCGACTGAGACCAGTCCGTGGCAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACAGATTGGGGGTGGGGGGGCGGCGACTGAGACCAGTCCGTGGCAAC  500

seq1  TTTTAGTTTTAATTGTTCTTTAGGGATCTTCTAAGAAGGAGCTCCTCTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGTTTTAATTGTTCTTTAGGGATCTTCTAAGAAGGAGCTCCTCTTC  550

seq1  CTACAAGCCATTGGGTAGGATCCCTTCAATCAATGGTTTCTTCAGAGCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAAGCCATTGGGTAGGATCCCTTCAATCAATGGTTTCTTCAGAGCAG  600

seq1  AAAGGATAAAAATCCCAGCTTGCCATTTGAATTGCTTTAGTTAAAGAGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGATAAAAATCCCAGCTTGCCATTTGAATTGCTTTAGTTAAAGAGCA  650

seq1  GCTTAAGTATATGTGAAAAGTATGTTTTCATTTTTCTAATAGCTTCATTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTAAGTATATGTGAAAAGTATGTTTTCATTTTTCTAATAGCTTCATTC  700

seq1  TTCTTAGGAGAAAGAAGGCCCAAATGGCCACAGTGATGGTCCTACAGATC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTAGGAGAAAGAAGGCCCAAATGGCCACAGTGATGGTCCTACAGATC  750

seq1  GACAAACATAATGTGTTAATAAGCAGGATTTCCTATATCTATAACTGTGG  800
      |||||||||||||||||||| ||||||| |||||||||||||||||||||
seq2  GACAAACATAATGTGTTAATTAGCAGGA-TTCCTATATCTATAACTGTGG  799

seq1  AGAAGAAAAACAAC-TTTTAGGAAAACTATTACTTTATTATCATATTTAT  849
      ||||| |||||||| |||||||||||||||||||||||||||||||||| 
seq2  AGAAG-AAAACAACTTTTTAGGAAAACTATTACTTTATTATCATATTTA-  847

seq1  TATATGTTAAGATTTATTGTGAGCCTTGTGCTTTCTCTATTTTTACATTA  899
      |||||| ||||| |||||||||| ||||||||||||||||||||||||||
seq2  TATATG-TAAGA-TTATTGTGAGTCTTGTGCTTTCTCTATTTTTACATTA  895

seq1  ATTTCATAGGTTATATTTTACAAGATTGTTTTTACAGCATCTTATTTGAT  949
      |||||||||| |||| ||||||||||||| |||| | |||| ||||||| 
seq2  ATTTCATAGG-TATAATTTACAAGATTGTATTTA-AACATCCTATTTGAA  943

seq1  TTCTGTAAAATCCCTATGGCATGTGGAAGACTGGCATTTTATTATCTTTA  999
      ||||||||| |||| ||| | ||||||| ||||||| |||||| ||||||
seq2  TTCTGTAAATTCCCAATGAC-TGTGGAA-ACTGGCA-TTTATT-TCTTTA  989

seq1  GCTTATAGAAGTGAGATGCTCAACGACTATCATGATTT  1037
      ||||||| ||||| ||| |||||||| ||| |||||||
seq2  GCTTATA-AAGTG-GAT-CTCAACGA-TATTATGATTT  1023

seq1: chr1_17433932_17434994
seq2: B6Ng01-062K24.g_66_1119 (reverse)

seq1  AAATCTATGTGAGATTTATAGCAAGTCTCTGAATCATAGCATTCTCTAT-  49
      |||||||||||||| ||||||| ||||| |||||||||||| ||||||| 
seq2  AAATCTATGTGAGA-TTATAGC-AGTCTTTGAATCATAGCA-TCTCTATA  47

seq1  ACTATTCTTTTATAACTCTTTATGTTTTGATTCTAGCTAAAACTACTACT  99
      ||||||| |||||||||| ||||| ||||||||||||| |||||||||| 
seq2  ACTATTC-TTTATAACTC-TTATG-TTTGATTCTAGCT-AAACTACTAC-  92

seq1  TGATAATACCATGATTAGGTGATTCCGACTATGCTTCTTTGGAGAATGTG  149
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGA-AATACCATGATTAGGTGATTCCGACTATGCTTCTTTGGAGAATGTG  141

seq1  AACCCCTACAAGGTTTTAGCCATGCATTCTTTTTTGTAGTTGGAGTTCAG  199
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  AACCCCTACAAGGTTTTAGCCATGCATTC-TTTTTGTAGTTGGAGTTCAG  190

seq1  TATTGAGCCAGATGTATAACTAGCATTTGGTAAAAGTACTTTGCAATGAA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGAGCCAGATGTATAACTAGCATTTGGTAAAAGTACTTTGCAATGAA  240

seq1  ACATCTAGGAAAGACATAATGAGTTTCTAAAATTCATTTATTATCCATGT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCTAGGAAAGACATAATGAGTTTCTAAAATTCATTTATTATCCATGT  290

seq1  AGATGAAGAGGATGGCTGATGAAGAGACTGACAAAACAGAGGTATAAAGA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGAAGAGGATGGCTGATGAAGAGACTGACAAAACAGAGGTATAAAGA  340

seq1  ATAACATTTTATGCTGACAAGCTTCCATAAGATTGCTGTTATGTAAAATA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACATTTTATGCTGACAAGCTTCCATAAGATTGCTGTTATGTAAAATA  390

seq1  ATACTAAATAAATAAATACCAAAACACAACTACCAGAATATATTGTGTTT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTAAATAAATAAATACCAAAACACAACTACCAGAATATATTGTGTTT  440

seq1  ATAAATTTAATTGACATTTTCTTGCACTATCTTTTAAGAACAAGATTCTT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATTTAATTGACATTTTCTTGCACTATCTTTTAAGAACAAGATTCTT  490

seq1  TGGATATATGTGTGAGGGATTTTCTAGATTAGGTTAACTGAGATGGAAAG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATATATGTGTGAGGGATTTTCTAGATTAGGTTAACTGAGATGGAAAG  540

seq1  ACCCAATCTAAATGCAGCTCAATGTCCCTTTGTTTTAGTCTTTTCTTGGT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAATCTAAATGCAGCTCAATGTCCCTTTGTTTTAGTCTTTTCTTGGT  590

seq1  CAAATTGAAATACCTATTTATCATTGTAACCATCTCAGATAGATGGTTAT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATTGAAATACCTATTTATCATTGTAACCATCTCAGATAGATGGTTAT  640

seq1  AAAGACATAACTGAATGAATGGTTTCTAAAATGTAAAAGGATATGTTTTA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGACATAACTGAATGAATGGTTTCTAAAATGTAAAAGGATATGTTTTA  690

seq1  AAATATTTTCCAAATATTTTTTGCATTAAATCATATATCAGAATAATAGA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATTTTCCAAATATTTTTTGCATTAAATCATATATCAGAATAATAGA  740

seq1  AATAAATACAAGAATATATTATATTTGGAATTTTGCTAGTTACAGTAGCA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAATACAAGAATATATTATATTTGGAATTTTGCTAGTTACAGTAGCA  790

seq1  CCAAAAATTTACTAGTGTTTCCCTTTCACTATACTGAAAATGCTCTTGAT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAAATTTACTAGTGTTTCCCTTTCACTATACTGAAAATGCTCTTGAT  840

seq1  TTCCTACAGACTCTGTGATGTAAGAACATACATCTTAATTCTTTTTCAGA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTACAGACTCTGTGATGTAAGAACATACATCTTAATTCTTTTTCAGA  890

seq1  TGATGGAGCTAACATATATAAAGAAAAATATAGTTGCCCTTAAGGAGCTG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGGAGCTAACATATATAAAGAAAAATATAGTTGCCCTTAAGGAGCTG  940

seq1  AGTTACAGATGATACCTCTGTGAAGTAAGATTATAAATTGATAATAGTAA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTACAGATGATACCTCTGTGAAGTAAGATTATAAATTGATAATAGTAA  990

seq1  TGCTACCTCCATCAAATGGTTTTGATCTCAATTATTCTTATACTATTACA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTACCTCCATCAAATGGTTTTGATCTCAATTATTCTTATACTATTACA  1040

seq1  AGGAAGAAGAATTC  1063
      ||||||||||||||
seq2  AGGAAGAAGAATTC  1054