BAC Information

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BAC

Clone NameB6Ng01-062L17
Chromosome5 (Build37)1 (Build37)
Map Location 67,870,022 - 67,870,30916,976,668 - 16,977,816
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneApbb2, Uchl1, LOC100041876, 3732412D22Rik, LOC624662, Phox2b, Tmem33, Slc30a9, EG666938, C330024D21Rik
Downstream geneD830007B15Rik, Atp8a1, LOC100042458, EG330097, EG666977, AY616753
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-062L17.bB6Ng01-062L17.g
ACCDH883037DH883038
length8571,130
definitionDH883037|Mus musculus domesticus DNA, BAC clone: B6Ng01-062L17, 5' end.DH883038|Mus musculus domesticus DNA, BAC clone: B6Ng01-062L17, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(67,870,022 - 67,870,309)(16,976,668 - 16,977,816)
sequence
gaattctttgtttagctctgtaccccacttttaatagcgttatttggttc
tctagagtctaactttttgagttctttgtatatattggatattagccctc
tattgaatgtagggttggtaaagatcttttcccaacctgatggttgccat
tttgtcctattgatagtgtcctttgcctttttcaaatttatgaggtcccc
tttgtcaatacttgatcttagagtataatccattggtgttctgttcagga
aaatttcgaggctcttccccactttctcttctattagtttcagtgtatat
ggttttatgtgaagtccttgatccacttggacttgagctttgtaaaagaa
gacaaaaatggatggatttgcattcttctacatgatgcttacagccagca
attgaactgagcacaggatccccaatggaggagatagagaaaggactgaa
ggaggtgaagggatttgcaaccccataggatgaacaacatcaaccaacaa
gaccccctactgctcccagggactaaaccaccaaccaaagagtacacatg
gagggacccatagctccaatgcatgtgtagcagaggatggcctactcaga
catcaatggtaggagaggcccttggtcctgtgagggctcgatgccccagt
gtaggagaatgccagcacggggaagcagaaatgggtaggtgtttgtggga
acactgtcatagaagcagggaaaaggggtatgggatagggagtttctgga
gggaaaactagaaaaggtgataacatttgaaatgtaaataaagaaaatat
ctaattaaaaaaatttaaaagagaagtgttcctgtttgcctgccttcaat
gtcttca
gaattccctccactttagtcggcccatttctcttcaccccatagttgcca
gtgcgaaataaataaggaaccaggatctgttacctctgaaataaacttct
agtattcattatgctgtctaaccagcttaagtgtaatgtcttatcagagt
gctgagaaaccattggtgcagccatggtggatggtctgctggccttatta
gatataggaacaagttgcttaccaaaccaattgcacaaaattactcagcc
acaactttgagaagtgggagcaaatggcatctcaacagttcttttgtaaa
tctcaagatatctttctctcccataagtcaacaccctttctccatgtagc
atagaggcactgacaatgaaaaccagaactagacagtaggatcctcaaag
tatgttatggaaaaattgctactttgcaggagcttgaggatccaagggca
gaattgttttatgcattaatcagctagttaatgctatatatgtgtggcat
tgtctcagacaatagggcataagatataaagtctctgcctgtttctctta
gaaatgcagttttgggtagagatagaaaaccagacaatttctaaacagag
ttgaggaccaacagggtacagggttctctgaggaagggattctctacagc
agtggagaactatgataaggaaagctgcctggcacggtttagtagagatg
tgagttccaagtctagccctcttcagagccttttctttttccgctaagga
tataatcaatatggcgtgcactagattttaataatatcatgtgaatttct
gtagtcactactcagaatgagtatcttttcatgttatttaccccattctt
ttctgcacatggcccatacaacaaactgtggaaaaactcagctcgaaaga
aagactctgatgcagtctgtctttgctcgtgaaaactgtcttctcagttc
tacacacatcttgggaaaaaataaggtgcagatgtttctcaacgcagact
tgcttcttgtcggtgtctggctggccgggggcttcttttctaggcagtgg
tcactggggaggtcaggaggatgtgaatggaattggtcatgcaatctaag
ttgtatgaatgatgtttgggttccttaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_67870022_67870309
seq2: B6Ng01-062L17.b_558_857

seq1  TCCCAGGGACTAAACCACCAACCAAAGAG--CACATGGAGGGACCCATGG  48
      |||||||||||||||||||||||||||||  ||||||||||||||||| |
seq2  TCCCAGGGACTAAACCACCAACCAAAGAGTACACATGGAGGGACCCATAG  50

seq1  CTCCAGCTGCAAATGTAGTAGAGGATGGCCTTGTTGAACATCAATGGGAG  98
      |||||  ||||  ||||| ||||||||||||  |   |||||||||| ||
seq2  CTCCA-ATGCATGTGTAGCAGAGGATGGCCTACTCAGACATCAATGGTAG  99

seq1  GAGAGGCCCTTGGTCCTGTGATGGCTCTATGCCCCAGTGTAGGGGAATGC  148
      ||||||||||||||||||||| ||||| ||||||||||||||| ||||||
seq2  GAGAGGCCCTTGGTCCTGTGAGGGCTCGATGCCCCAGTGTAGGAGAATGC  149

seq1  CAGCACCAGGAAGTGGGAGTGGGGGGGGGGGGTTGG------TG------  186
      ||||||  |||||  | | ||||  || |    |||      ||      
seq2  CAGCACGGGGAAGCAGAAATGGGTAGGTGTTTGTGGGAACACTGTCATAG  199

seq1  -AGCAGCGGGAGGGAGGAGGTGATAGGGAGGTTTTGGAGGGGAAATCAGG  235
       ||||| |  | || | | | ||||||||| || ||||||| |||  || 
seq2  AAGCAGGGAAAAGGGGTATGGGATAGGGAGTTTCTGGAGGGAAAACTAGA  249

seq1  AAAGGGGATAACATTTGAAATGTAAATAAAGAAAATATCTAATTTTAAAA  285
      ||||| ||||||||||||||||||||||||||||||||||||  ||||||
seq2  AAAGGTGATAACATTTGAAATGTAAATAAAGAAAATATCTAA--TTAAAA  297

seq1  AAA  288
      |||
seq2  AAA  300

seq1: chr1_16976668_16977816
seq2: B6Ng01-062L17.g_69_1198

seq1  GAATTCCCTCCACTTTAGTCGGCCCATTTCTCTTCACCCCATAGTTGCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTCCACTTTAGTCGGCCCATTTCTCTTCACCCCATAGTTGCCA  50

seq1  GTGCGAAATAAATAAGGAACCAGGATCTGTTACCTCTGAAATAAACTTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCGAAATAAATAAGGAACCAGGATCTGTTACCTCTGAAATAAACTTCT  100

seq1  AGTATTCATTATGCTGTCTAACCAGCTTAAGTGTAATGTCTTATCAGAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATTCATTATGCTGTCTAACCAGCTTAAGTGTAATGTCTTATCAGAGT  150

seq1  GCTGAGAAACCATTGGTGCAGCCATGGTGGATGGTCTGCTGGCCTTATTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAGAAACCATTGGTGCAGCCATGGTGGATGGTCTGCTGGCCTTATTA  200

seq1  GATATAGGAACAAGTTGCTTACCAAACCAATTGCACAAAATTACTCAGCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATAGGAACAAGTTGCTTACCAAACCAATTGCACAAAATTACTCAGCC  250

seq1  ACAACTTTGAGAAGTGGGAGCAAATGGCATCTCAACAGTTCTTTTGTAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACTTTGAGAAGTGGGAGCAAATGGCATCTCAACAGTTCTTTTGTAAA  300

seq1  TCTCAAGATATCTTTCTCTCCCATAAGTCAACACCCTTTCTCCATGTAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAAGATATCTTTCTCTCCCATAAGTCAACACCCTTTCTCCATGTAGC  350

seq1  ATAGAGGCACTGACAATGAAAACCAGAACTAGACAGTAGGATCCTCAAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAGGCACTGACAATGAAAACCAGAACTAGACAGTAGGATCCTCAAAG  400

seq1  TATGTTATGGAAAAATTGCTACTTTGCAGGAGCTTGAGGATCCAAGGGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTTATGGAAAAATTGCTACTTTGCAGGAGCTTGAGGATCCAAGGGCA  450

seq1  GAATTGTTTTATGCATTAATCAGCTAGTTAATGCTATATATGTGTGGCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTGTTTTATGCATTAATCAGCTAGTTAATGCTATATATGTGTGGCAT  500

seq1  TGTCTCAGACAATAGGGCATAAGATATAAAGTCTCTGCCTGTTTCTCTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCAGACAATAGGGCATAAGATATAAAGTCTCTGCCTGTTTCTCTTA  550

seq1  GAAATGCAGTTTTGGGTAGAGATAGAAAACCAGACAATTTCTAAACAGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGCAGTTTTGGGTAGAGATAGAAAACCAGACAATTTCTAAACAGAG  600

seq1  TTGAGGACCAACAGGGTACAGGGTTCTCTGAGGAAGGGATTCTCTACAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGGACCAACAGGGTACAGGGTTCTCTGAGGAAGGGATTCTCTACAGC  650

seq1  AGTGGAGAACTATGATAAGGAAAGCTGCCTGGCACGGTTTAGTAGAGATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGAGAACTATGATAAGGAAAGCTGCCTGGCACGGTTTAGTAGAGATG  700

seq1  TGAGTTCCAAGTCTAGCCCTCTTCAGAGCCTTTTCTTTTTCCGCTAAGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTCCAAGTCTAGCCCTCTTCAGAGCCTTTTCTTTTTCCGCTAAGGA  750

seq1  TATAATCAATATGGCGTGCACTAGATTTTAATAATATCATGTGAATTTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATCAATATGGCGTGCACTAGATTTTAATAATATCATGTGAATTTCT  800

seq1  GTAGTCACTACTCAGAATGAGTATCTTTTCATGTTTATTTACCCCATTCT  850
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  GTAGTCACTACTCAGAATGAGTATCTTTTCATG-TTATTTACCCCATTCT  849

seq1  TTTCTGCACATGGCCCATACAACAAACTGTGGAAAAACTCAGGCCCGAAA  900
      ||||||||||||||||||||||||||||||||||||||||| || |||||
seq2  TTTCTGCACATGGCCCATACAACAAACTGTGGAAAAACTCA-GCTCGAAA  898

seq1  GAAAAGACTCTGATGCAGCCTGTCTTTGCTCCGTGAAAAACTGTCTTCTC  950
      | |||||||||||||||| ||||||||||| |||| ||||||||||||||
seq2  G-AAAGACTCTGATGCAGTCTGTCTTTGCT-CGTG-AAAACTGTCTTCTC  945

seq1  AAGTCCTACACACATCTTTGGGAAAAAATAAGGTGCAGGATGTTTTCTCA  1000
       ||| ||||||||||| |||||||||||||||||||| |||| |||||| 
seq2  -AGTTCTACACACATC-TTGGGAAAAAATAAGGTGCA-GATG-TTTCTC-  990

seq1  AACGCAGACTTGCTTCCTGTCGGTGTCTGCCTGGCCGTGGGGCTTCCTTT  1050
      |||||||||||||||| |||||||||||| ||||||| ||||||| ||||
seq2  AACGCAGACTTGCTTCTTGTCGGTGTCTGGCTGGCCG-GGGGCTT-CTTT  1038

seq1  TCTAGGCCAGTGGTCACTGGGGGAGGTCAGGAGGATGTG-ATGGAATTTG  1099
      |||||| ||||||||||| |||||||||||||||||||| |||||||| |
seq2  TCTAGG-CAGTGGTCACT-GGGGAGGTCAGGAGGATGTGAATGGAATTGG  1086

seq1  TACATGCAAACCCCATAGTTGTCATGAATGATGTTTTGTTTCCCTTAAAA  1149
      | |||||||    |  |||||| ||||||||||||| | || ||||||||
seq2  T-CATGCAA---TCTAAGTTGT-ATGAATGATGTTTGGGTT-CCTTAAAA  1130