BAC Information

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BAC

Clone NameB6Ng01-062M13
Chromosome1 (Build37)
Map Location 51,048,306 - 51,151,970
singlet/doubletdoublet
Overlap geneTmeff2
Upstream geneEG666962, EG666970, LOC100041993
Downstream geneSdpr, LOC383504, Obfc2a, Myo1b, EG667010, LOC667014, Stat4, LOC100042634
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-062M13.bB6Ng01-062M13.g
ACCDH883074DH883075
length8481,176
definitionDH883074|Mus musculus domesticus DNA, BAC clone: B6Ng01-062M13, 5' end.DH883075|Mus musculus domesticus DNA, BAC clone: B6Ng01-062M13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(51,151,127 - 51,151,970)(51,048,306 - 51,049,515)
sequence
gaattcttaattactatcttcaagttttgtaagtaacttcaagtgaaaag
gtggattgcgagtatgactgtgcagatatatccagaggtacttgccagac
ttttcaagcacagagagttccagcagctctcacagtcataggagtttgtt
gatactcaaaacaaatatgaggtaagtggattattctacagtcaattaca
taggaatgctgtcagcttcaagaggcctattctgttcaaaccagaggata
cttagaaacacataaagccatgtcctaagaaatgcaaatgacagacggac
cttatggtttgcatgtattactacttctctgaattgaccaactacttgtt
atgcaaattattgtaaagacaaaagaggaaagattaggcagattttgcac
atcatagtataaaggtagtttgtttcttcagagtttttctaggtcaggaa
tgtggggcatagaggatttccttcttgccttaccctagcccttgagaaga
gcagggagagaatgaagagaaagagaaggggaaggaggagggaggggaca
cgtgcacgcacgtgcacacacacacagagacagagaaagagggagagaga
gagagagagagagagagagagagagagagagagagagagagagagagaga
gagagaccactgaagaaaactaggcaaactagtgttaaaaaactcctggg
gtttttaattttattttcttggtattcacacttattcaaccttctgcctt
ttaaactgcttagttgttggatgattgttatgcagcaatggacacctggc
tgagatgtatttctttgaattgaggaagagtcactaatcggaggcttt
gaattcctgcccacatttgaagggaaattacacatgcacgtataatcccc
tagtaatgtaggagatattgtcttattccatacttagagaaaggtgagtg
ccagcttaaatttaaaatatacaaaataaaggccattatgcatttggaca
tcacaatgcagagttgagaggttttatggaagataaaaggctacagatga
gagagcagcctctgaaaatagggaaaaaagctcagcaattaaccttaaga
tgaagtagctttcctttctcaccatgatcaactcatacttaagtctttaa
atggaaaatgacttgtagttaacctttatgattcagaaaaccatttaatt
gtaattatagctaatccaattaaagatggattataataactgctgaatta
ataggtcatgaaacactgagtttaattatgagtgtatttattttggaaaa
attactcttaaggtattatgtaattttaaaaattattttgagctcaaaat
tatataggttgtgattcataagtaaaagaagaagaaggagtgaatacccc
agagctcttcaaggcataagggcagaacaggaaacaggacaatatgagtg
acaaagcttgattttaaataactaaactcaatttttttaaattcacaacc
ttgaaaaaatactattagtagtttagtttcatccctagaaacatcaaaat
tattgttaaactttatattctaatgagattagtagaattaaaagaaaatt
ttacttttaaaaccacaaatcgtcacatcgcacactgtaactctgaaact
cagacacttgggtctttagttgcatatttagagggaaatgtaactgtgtt
taaagtagaacaaatgaccagtgttaacatcaatagatatattttaacat
tagtgttttgttctttttctacatttaaagttatggaaacagacatgagt
agatataaacaaacaaaacaaaccacatggcttgaacaagaaaataatac
ccacagcatgagcacatttagggatgcatacagtaggtttcagttttcaa
ccttctcacaatatgcaaaagggcgtactcttcatgatgtgcacatcagc
atggttctcattgggtttgggggaatatagtaattccactgtaaattcat
ttcctagtcgactgcacagttattct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_51151127_51151970
seq2: B6Ng01-062M13.b_47_894 (reverse)

seq1  AAAGCCCTCCGTTTAGTGACTCTTCCTCAATTCAATG-AATACAACTCTG  49
      |||| |||||| ||||||||||||||||||||||| | |||||| ||| |
seq2  AAAG-CCTCCGATTAGTGACTCTTCCTCAATTCAAAGAAATACATCTCAG  49

seq1  CCAGGTTTCCATTGCTGCATAACAATCATCCAACAACTAAGCAGTTTAAA  99
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGTGTCCATTGCTGCATAACAATCATCCAACAACTAAGCAGTTTAAA  99

seq1  AGGCAGAAGGTTG-ATAAGTGTGAATACCAAG-AAATAAAA-TAAAAACC  146
      ||||||||||||| |||||||||||||||||| |||||||| ||||||||
seq2  AGGCAGAAGGTTGAATAAGTGTGAATACCAAGAAAATAAAATTAAAAACC  149

seq1  CCAGGAG-TTTTTAACACTAGTTTGCCTAGTTTTCTTCAGTGGTCTCTCT  195
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGAGTTTTTTAACACTAGTTTGCCTAGTTTTCTTCAGTGGTCTCTCT  199

seq1  CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT  249

seq1  CTCTCTCCCTCTTTCTCTGTCTCTGTGTGTGTGTGCACGTGCGTGCACGT  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCCCTCTTTCTCTGTCTCTGTGTGTGTGTGCACGTGCGTGCACGT  299

seq1  GTCCCCTCCCTCCTCCTTCCCCTTCTCTTTCTCTTCATTCTCTCCCTGCT  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCCTCCCTCCTCCTTCCCCTTCTCTTTCTCTTCATTCTCTCCCTGCT  349

seq1  CTTCTCAAGGGCTAGGGTAAGGCAAGAAGGAAATCCTCTATGCCCCACAT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCAAGGGCTAGGGTAAGGCAAGAAGGAAATCCTCTATGCCCCACAT  399

seq1  TCCTGACCTAGAAAAACTCTGAAGAAACAAACTACCTTTATACTATGATG  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGACCTAGAAAAACTCTGAAGAAACAAACTACCTTTATACTATGATG  449

seq1  TGCAAAATCTGCCTAATCTTTCCTCTTTTGTCTTTACAATAATTTGCATA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAAATCTGCCTAATCTTTCCTCTTTTGTCTTTACAATAATTTGCATA  499

seq1  ACAAGTAGTTGGTCAATTCAGAGAAGTAGTAATACATGCAAACCATAAGG  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGTAGTTGGTCAATTCAGAGAAGTAGTAATACATGCAAACCATAAGG  549

seq1  TCCGTCTGTCATTTGCATTTCTTAGGACATGGCTTTATGTGTTTCTAAGT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGTCTGTCATTTGCATTTCTTAGGACATGGCTTTATGTGTTTCTAAGT  599

seq1  ATCCTCTGGTTTGAACAGAATAGGCCTCTTGAAGCTGACAGCATTCCTAT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTCTGGTTTGAACAGAATAGGCCTCTTGAAGCTGACAGCATTCCTAT  649

seq1  GTAATTGACTGTAGAATAATCCACTTACCTCATATTTGTTTTGAGTATCA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATTGACTGTAGAATAATCCACTTACCTCATATTTGTTTTGAGTATCA  699

seq1  ACAAACTCCTATGACTGTGAGAGCTGCTGGAACTCTCTGTGCTTGAAAAG  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACTCCTATGACTGTGAGAGCTGCTGGAACTCTCTGTGCTTGAAAAG  749

seq1  TCTGGCAAGTACCTCTGGATATATCTGCACAGTCATACTCGCAATCCACC  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGCAAGTACCTCTGGATATATCTGCACAGTCATACTCGCAATCCACC  799

seq1  TTTTCACTTGAAGTTACTTACAAAACTTGAAGATAGTAATTAAGAATTC  844
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCACTTGAAGTTACTTACAAAACTTGAAGATAGTAATTAAGAATTC  848

seq1: chr1_51048306_51049515
seq2: B6Ng01-062M13.g_67_1242

seq1  GAATTCCTGCCCACATTTGAAGGGAAATTACACATGCACGTATAATCCCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGCCCACATTTGAAGGGAAATTACACATGCACGTATAATCCCC  50

seq1  TAGTAATGTAGGAGATATTGTCTTATTCCATACTTAGAGAAAGGTGAGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAATGTAGGAGATATTGTCTTATTCCATACTTAGAGAAAGGTGAGTG  100

seq1  CCAGCTTAAATTTAAAATATACAAAATAAAGGCCATTATGCATTTGGACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCTTAAATTTAAAATATACAAAATAAAGGCCATTATGCATTTGGACA  150

seq1  TCACAATGCAGAGTTGAGAGGTTTTATGGAAGATAAAAGGCTACAGATGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAATGCAGAGTTGAGAGGTTTTATGGAAGATAAAAGGCTACAGATGA  200

seq1  GAGAGCAGCCTCTGAAAATAGGGAAAAAAGCTCAGCAATTAACCTTAAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGCAGCCTCTGAAAATAGGGAAAAAAGCTCAGCAATTAACCTTAAGA  250

seq1  TGAAGTAGCTTTCCTTTCTCACCATGATCAACTCATACTTAAGTCTTTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGTAGCTTTCCTTTCTCACCATGATCAACTCATACTTAAGTCTTTAA  300

seq1  ATGGAAAATGACTTGTAGTTAACCTTTATGATTCAGAAAACCATTTAATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAAAATGACTTGTAGTTAACCTTTATGATTCAGAAAACCATTTAATT  350

seq1  GTAATTATAGCTAATCCAATTAAAGATGGATTATAATAACTGCTGAATTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATTATAGCTAATCCAATTAAAGATGGATTATAATAACTGCTGAATTA  400

seq1  ATAGGTCATGAAACACTGAGTTTAATTATGAGTGTATTTATTTTGGAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGTCATGAAACACTGAGTTTAATTATGAGTGTATTTATTTTGGAAAA  450

seq1  ATTACTCTTAAGGTATTATGTAATTTTAAAAATTATTTTGAGCTCAAAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACTCTTAAGGTATTATGTAATTTTAAAAATTATTTTGAGCTCAAAAT  500

seq1  TATATAGGTTGTGATTCATAAGTAAAAGAAGAAGAAGGAGTGAATACCCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATAGGTTGTGATTCATAAGTAAAAGAAGAAGAAGGAGTGAATACCCC  550

seq1  AGAGCTCTTCAAGGCATAAGGGCAGAACAGGAAACAGGACAATATGAGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCTCTTCAAGGCATAAGGGCAGAACAGGAAACAGGACAATATGAGTG  600

seq1  ACAAAGCTTGATTTTAAATAACTAAACTCAATTTTTTTAAATTCACAACC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGCTTGATTTTAAATAACTAAACTCAATTTTTTTAAATTCACAACC  650

seq1  TTGAAAAAATACTATTAGTAGTTTAGTTTCATCCCTAGAAACATCAAAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAAAAATACTATTAGTAGTTTAGTTTCATCCCTAGAAACATCAAAAT  700

seq1  TATTGTTAAACTTTATATTCTAATGAGATTAGTAGAATTAAAAGAAAATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGTTAAACTTTATATTCTAATGAGATTAGTAGAATTAAAAGAAAATT  750

seq1  TTACTTTTAAAACCACAAATCGTCACATCGCACACTGTAACTCTGAAACT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTTTTAAAACCACAAATCGTCACATCGCACACTGTAACTCTGAAACT  800

seq1  CAGACACTTGGGTCTTTAGTTGCATATTTAGAGGGAAATGTAACTGTGTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACACTTGGGTCTTTAGTTGCATATTTAGAGGGAAATGTAACTGTGTT  850

seq1  TAAAGTAGAACAAATGACCAGTGTTAACATCAATAGATATATTTTAACAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGTAGAACAAATGACCAGTGTTAACATCAATAGATATATTTTAACAT  900

seq1  TAGTGTTTTGTTCTTTTTCTACATTTAAAAGTTATGGAAACAGACATGAG  950
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TAGTGTTTTGTTCTTTTTCTACATTT-AAAGTTATGGAAACAGACATGAG  949

seq1  TAGATATAAAACAAAACAAAACAAAACCACAATGGCTTGAACAAGAAAAT  1000
      ||||||||||   ||||||||| ||||||| |||||||||||||||||||
seq2  TAGATATAAA--CAAACAAAAC-AAACCAC-ATGGCTTGAACAAGAAAAT  995

seq1  AATTACCCACAGCAATTGAAGCACATATTAGGGGATGCATACAGTAGGGT  1050
      || |||||||||||  || ||||||| ||| ||||||||||||||| |||
seq2  AA-TACCCACAGCA--TG-AGCACAT-TTA-GGGATGCATACAGTA-GGT  1038

seq1  TTCAGTCTTTCCAACACTTCTCACCAATATGCAAAAGGGCGTACTCTTCC  1100
      |||||  ||| |||| ||||||| |||||||||||||||||||||||| |
seq2  TTCAG--TTTTCAAC-CTTCTCA-CAATATGCAAAAGGGCGTACTCTT-C  1083

seq1  ATGATGTGCACATTCAAGCCATGTTCTCCAATTGGGTTTTGGGGTGATAT  1150
      |||||||||||||   |||   ||||||  |||||| |||||||  ||| 
seq2  ATGATGTGCACAT--CAGCATGGTTCTC--ATTGGG-TTTGGGGGAATA-  1127

seq1  TAGTAAATTCTCACTGTAAATATCAATTTCCCTAATTCTACACTGCACAG  1200
      |||| ||||| |||||||||| || ||||||    |  |  |||||||||
seq2  TAGT-AATTC-CACTGTAAAT-TC-ATTTCC----TAGTCGACTGCACAG  1169

seq1  TTTTCATTCT  1210
      ||   |||||
seq2  TT---ATTCT  1176