BAC Information

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BAC

Clone NameB6Ng01-062N01
Chromosome1 (Build37)5 (Build37)
Map Location 105,386,993 - 105,388,14690,584,504 - 90,584,545
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100041056, LOC100041067
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-062N01.bB6Ng01-062N01.g
ACCDH883092DH883093
length1,154369
definitionDH883092|Mus musculus domesticus DNA, BAC clone: B6Ng01-062N01, 5' end.DH883093|Mus musculus domesticus DNA, BAC clone: B6Ng01-062N01, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(105,386,993 - 105,388,146)(90,584,504 - 90,584,545)
sequence
gaattctaaaatatctgggactgcatagtgagatcctgttaattatgtat
ttatagataaaaggaactgttaaacttttgttggttcagatcctaggaaa
gacaggaatttgttttcagttgtgcaccctttaggaagtcaataggttcc
agtggataattccatacccatggccattacaccttttagaacacaaaatg
aaacaaaacaaaacaaaacacatgggttttagagggtgtgtaagaagaaa
gggaggctgacagtgctagaaggaagacaagagagggcaatatgaaagaa
caaaaggaatgcattatatacaagtatgaaatgttaaaaatattaattaa
agggttaaaatctaagagaaaatatttcaagttgaaaatcctataccata
ttcaattaataatgaactgtatggcttctggtttgcaactctaccctggg
cagatatggtgcttctgacccactcccacacaccagaacctctctgtctt
ccaagatgtctactgtaactagaacataccattcctgtcccacaggacat
ttgccataccagggacacaggagacctgttctaaccatgaaaacaagata
ccctaatatccagagacagcactgtctacttctaaagaggccttctgtaa
cccaagtcacagaattcaacctgcatccaagtagggataggctggagtca
tagacaaccaagacattttataccagaaataaccagatggtgaaaggcaa
atgcaagaggataagtaacagaagctaatataacttggaacaataagaac
ccaattattacacagcagcaagccttggacaccctaacacacatgaaaag
caagaatctttcttaaactcccaatttataaagattatagaaacctttaa
aaagggatagaaataactctcttaaagaaacatggggaacacaggcaaac
agaagcactaaaagagaaataaacaaaccttaaaaaaaattcaggaaaca
cataaatttgatgaggattgacaaagtgtctagacctaaaatggtgatag
aaaaattaaaaaaatcacaatgcaaattcaggaaagtgatcaggattacg
atgcagcatcaccaacggaatacccaagataaaaagagaatttcggcaag
agaa
catctggttcccagctcgaaccatctagggactaacactcagggtgctgg
atagtactcagcctgttactagagaataatgacatcatcaatttcttctc
acagaaagtgtgatagcatgtataatacctacacatgttcaaaacagatc
aaacctcagcagtgagaagggaaagtgcacatcaagtctcagtggtaaaa
acaaaaagctatttacaactgaaaaattgtaggaaagggaaaaacaattt
tattcaagggattgtcactgggtataccaaccacattccagggcagaatc
catgtttactttagttcaccaagacaaaactgactccagtgtgtgtgtgt
gtgtgtgtgtgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_105386993_105388146
seq2: B6Ng01-062N01.b_68_1200 (reverse)

seq1  TTCT-TTGCCTGAAATTCTCTTTTTTATCTTGTGTATTCTGTTGGTGATG  49
      |||| ||||| ||||||||| ||||||||||| |||||| ||||||||||
seq2  TTCTCTTGCC-GAAATTCTC-TTTTTATCTTGGGTATTCCGTTGGTGATG  48

seq1  CTTGCATCTGTAATTCCTGATCACTTTCCTGGATTTTGCATTTGTGATTT  99
      | |||||| |||| |||||||||||||||| || |||||| ||||||   
seq2  C-TGCATC-GTAA-TCCTGATCACTTTCCT-GAATTTGCA-TTGTGA---  90

seq1  TTTTTTTAATTTTTCTATCACCATTTTTAGGTCTTAGACACTTTTGTTCA  149
      ||||||||||||||||||||||| ||||||||| ||||||||||   |||
seq2  TTTTTTTAATTTTTCTATCACCA-TTTTAGGTC-TAGACACTTT--GTCA  136

seq1  ATTCCTTCATCAGATTTATTGTGTTTTCCTGAATTTTTTTTTAAGGTTTT  199
      ||  | |||||| ||||| |||| ||||||||| |||||||||||| |||
seq2  AT--CCTCATCAAATTTA-TGTG-TTTCCTGAA-TTTTTTTTAAGG-TTT  180

seq1  GTTTATTTCTTCTTTTAGTGCTTCTGTTTGCCTGTGTTTCCCCATGTTTC  249
      ||||||||| |||||||||||||||||||||||||| |||||||||||||
seq2  GTTTATTTC-TCTTTTAGTGCTTCTGTTTGCCTGTG-TTCCCCATGTTTC  228

seq1  TTTAAGGGAGTTATTTCTATCCCTTTTTAAAGGTTTCTATAATCTTTATA  299
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGAGAGTTATTTCTATCCCTTTTTAAAGGTTTCTATAATCTTTATA  278

seq1  AATTGGGAGTTTAAGAAAGATTCTTGCTTTTCATGTGTGTTAGGGTGTCC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGGGAGTTTAAGAAAGATTCTTGCTTTTCATGTGTGTTAGGGTGTCC  328

seq1  AAGGCTTGCTGCTGTGTAATAATTGGGTTCTTATTGTTCCAAGTTATATT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCTTGCTGCTGTGTAATAATTGGGTTCTTATTGTTCCAAGTTATATT  378

seq1  AGCTTCTGTTACTTATCCTCTTGCATTTGCCTTTCACCATCTGGTTATTT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTCTGTTACTTATCCTCTTGCATTTGCCTTTCACCATCTGGTTATTT  428

seq1  CTGGTATAAAATGTCTTGGTTGTCTATGACTCCAGCCTATCCCTACTTGG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTATAAAATGTCTTGGTTGTCTATGACTCCAGCCTATCCCTACTTGG  478

seq1  ATGCAGGTTGAATTCTGTGACTTGGGTTACAGAAGGCCTCTTTAGAAGTA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAGGTTGAATTCTGTGACTTGGGTTACAGAAGGCCTCTTTAGAAGTA  528

seq1  GACAGTGCTGTCTCTGGATATTAGGGTATCTTGTTTTCATGGTTAGAACA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGTGCTGTCTCTGGATATTAGGGTATCTTGTTTTCATGGTTAGAACA  578

seq1  GGTCTCCTGTGTCCCTGGTATGGCAAATGTCCTGTGGGACAGGAATGGTA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTCCTGTGTCCCTGGTATGGCAAATGTCCTGTGGGACAGGAATGGTA  628

seq1  TGTTCTAGTTACAGTAGACATCTTGGAAGACAGAGAGGTTCTGGTGTGTG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTAGTTACAGTAGACATCTTGGAAGACAGAGAGGTTCTGGTGTGTG  678

seq1  GGAGTGGGTCAGAAGCACCATATCTGCCCAGGGTAGAGTTGCAAACCAGA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTGGGTCAGAAGCACCATATCTGCCCAGGGTAGAGTTGCAAACCAGA  728

seq1  AGCCATACAGTTCATTATTAATTGAATATGGTATAGGATTTTCAACTTGA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCATACAGTTCATTATTAATTGAATATGGTATAGGATTTTCAACTTGA  778

seq1  AATATTTTCTCTTAGATTTTAACCCTTTAATTAATATTTTTAACATTTCA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTTTCTCTTAGATTTTAACCCTTTAATTAATATTTTTAACATTTCA  828

seq1  TACTTGTATATAATGCATTCCTTTTGTTCTTTCATATTGCCCTCTCTTGT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTGTATATAATGCATTCCTTTTGTTCTTTCATATTGCCCTCTCTTGT  878

seq1  CTTCCTTCTAGCACTGTCAGCCTCCCTTTCTTCTTACACACCCTCTAAAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTTCTAGCACTGTCAGCCTCCCTTTCTTCTTACACACCCTCTAAAA  928

seq1  CCCATGTGTTTTGTTTTGTTTTGTTTCATTTTGTGTTCTAAAAGGTGTAA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATGTGTTTTGTTTTGTTTTGTTTCATTTTGTGTTCTAAAAGGTGTAA  978

seq1  TGGCCATGGGTATGGAATTATCCACTGGAACCTATTGACTTCCTAAAGGG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCATGGGTATGGAATTATCCACTGGAACCTATTGACTTCCTAAAGGG  1028

seq1  TGCACAACTGAAAACAAATTCCTGTCTTTCCTAGGATCTGAACCAACAAA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACAACTGAAAACAAATTCCTGTCTTTCCTAGGATCTGAACCAACAAA  1078

seq1  AGTTTAACAGTTCCTTTTATCTATAAATACATAATTAACAGGATCTCACT  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTAACAGTTCCTTTTATCTATAAATACATAATTAACAGGATCTCACT  1128

seq1  ATGCA  1154
      |||||
seq2  ATGCA  1133

seq1: chr5_90584504_90584545
seq2: B6Ng01-062N01.g_402_441 (reverse)

seq1  CACACACACACACACACACACACACACACACTGCTTAGTCAG  42
      |||||||||||||||||||||||||||||||||   ||||||
seq2  CACACACACACACACACACACACACACACACTG--GAGTCAG  40