BAC Information

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BAC

Clone NameB6Ng01-062N15
Chromosome1 (Build37)
Map Location 65,729,086 - 65,872,436
singlet/doubletdoublet
Overlap genenone
Upstream geneCcnyl1, Fzd5, 9430067K14Rik, LOC667245, LOC100043141, 4921521F21Rik, LOC667276, Cryge, Crygd, Crygc, Crygb, LOC654356, Cryga, D630023F18Rik, Idh1, Pip5k3, Pthr2, LOC100042716, EG628894, LOC100043165, LOC383520, EG667775
Downstream geneCrygf, LOC667781, EG667786, Mtap2, C030018G13Rik, Rpe, 1110028C15Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-062N15.bB6Ng01-062N15.g
ACCDH883117DH883118
length1,0961,121
definitionDH883117|Mus musculus domesticus DNA, BAC clone: B6Ng01-062N15, 5' end.DH883118|Mus musculus domesticus DNA, BAC clone: B6Ng01-062N15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(65,871,326 - 65,872,436)(65,729,086 - 65,730,237)
sequence
gaattctgaacaagagatttcttagctgccatcagtctggatagtgacca
ccctaggaaagtcacacaggcagcattttcttaaattaattatttattgt
gtccatggtggataatagaaaatgaaaaaggaagactgcttttatttgtt
tgtattaaaattaaagagcaattcagatgaatgtctcacattgctcccat
gagtgaccagcactggcatatttccatagcaactgtgtgttggtgtgcca
tgtgtgatgctttcaattgctctccttattcaactccgttgtgctgctct
tttgtacctcatgtgaaaaattaagcattttagttcaattagttccaatt
attaagtaaccacacagttctgcttctccactaatataggaaagccattt
tcagcaaacaatgtttccttaagcttttactaaagtaattatccaggagg
gcagagaattctagaaaaagtggatagaatgaattagggcaaattaactt
taaatagaattaaaaaaatataaccattggctgaattaaggggcttatgt
attaatagatggttaaagaaggcatagttgggctttttgtttgttggtac
attttattttcgtgttttaataaagactcaaataaaaaaaattctcgaat
agagattcattatatacaggaaattcaactttattcctaagttaacctga
atgtaatttttctcttttcatactggtaaagctggaaacagtattgtcta
ctgaattctttaaacaaatgtgaatacagaaacaagacaacttgttagga
tagctgattccagtatatctgggccagaaatttacagttatgtcagaaat
ggcttaattctcaaaaactaaagctgttctggaagatacccaaaatggtc
tgaaaagagctaattggaaatagagaagccagtaattctatagaggaaat
atatcacgtgtgcttaaagcccacaatcacaagagctgatcaaatattca
ttgtcacctttaaacagctgagagtagactgtactttgaaataagaaagg
cagcagtgagcacagcatctctgctttctgttcacacagtgctcag
gaattcttaggcgttctgtcaccatcaccacctaggtctttagaaagctc
tgaggcagttattctaaattgaattggaatgattccttttaaaatcttgt
taatgtttgtgcagcagtgccctggggtaaatgtaataaccccttcattg
cccttgttatcctgcatggtaggagagagttctgatgtttctccagctgg
cctcagtgcatcaggattcaaacccaaattggatcctgctgtcacataaa
tgctgctttaatcagaaacgaaggacagtaaattagtaaaatctctgaga
atcttctgattcctcaaaataagaatcaagtctgcaaagaagttcatcat
ttgtgttaagttgctgtatttaagcctgtggctggtgattaaataacaga
gcgaatgttgtggtatgtttatttctattaggtccccatttttattaatt
ttcttttaacataggaacttatttaagaagaatattaccataaagtttga
tatatatactagatatgctaaaaatacactaaatatacattaaattatca
tactttatggtaatatactaagtagataagagaaaagaacatgatttttc
atattgtattttgagtgcttgaaaatacattggtgctgaatgatgaagtc
ttcccttccaaagtagaattaaaaaaaaaacagtttttcataaatcatgt
acatacatgtgttcatttaatacttggatacacacatgcatgtacatgtg
ttcatttaatacttgcatgtacataatgtgacttaaattctacttaaatt
taaatgttgtttatttctctcctgactttagacctgacctagaactagtg
aaatgaaaaacaacaacaacaacaacaacaaacatagaggaaggtagata
caatgtcagaacctagactgagtcccaatccagccatgctcatctgcagt
cacagcacagctctcagacttagattataagagagacagtgtgtatactc
atcctagcagacacatttattcagtcttctgctgacagtcttggtttgct
gaaattggagctgatgctctgctagcaaccacagtcattaaagactctca
tgcttgactgctgcctctcaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_65871326_65872436
seq2: B6Ng01-062N15.b_49_1144 (reverse)

seq1  CTGAGCACTGTGTGAACAGGAAAAGCAAGGAGAATGCCTGTGCTCACTGC  50
      |||||||||||||||||||  ||||||  ||| ||| |||||||||||||
seq2  CTGAGCACTGTGTGAACAG--AAAGCA--GAG-ATG-CTGTGCTCACTGC  44

seq1  TGCCTATCTTAATTTTCAAAGTAACAAGTCTACTCTTCAGCTGTTTAAAG  100
      ||||| |||||  ||||||||||   ||||||||| ||||||||||||||
seq2  TGCCTTTCTTA--TTTCAAAGTA--CAGTCTACTC-TCAGCTGTTTAAAG  89

seq1  GTGACAATGAATATTTGATTCAGCTCTTTGTGATTTGTGGGCTTTAAGCA  150
      |||||||||||||||||| ||||||| |||||| ||||||||||||||||
seq2  GTGACAATGAATATTTGA-TCAGCTC-TTGTGA-TTGTGGGCTTTAAGCA  136

seq1  CACGTGATATATTTCCTCTATAGAATTACTGGCTTCTCTATTTCCAATTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGTGATATATTTCCTCTATAGAATTACTGGCTTCTCTATTTCCAATTA  186

seq1  GCTCTTTTTCAGACCATTTTGGGTATCTTCCAGAACAGCCTTAGTTTTTG  250
      |||| |||||||||||||||||||||||||||||||||| ||||||||||
seq2  GCTC-TTTTCAGACCATTTTGGGTATCTTCCAGAACAGCTTTAGTTTTTG  235

seq1  AGAATTAAGCCATTTCTGACATAACTGTAAATTTCTGGCCCAGATATACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTAAGCCATTTCTGACATAACTGTAAATTTCTGGCCCAGATATACT  285

seq1  GGAATCAGCTATCCTAACAAGTTGTCTTGTTTCTGTATTCACATTTGTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATCAGCTATCCTAACAAGTTGTCTTGTTTCTGTATTCACATTTGTTT  335

seq1  AAAGAATTCAGTAGACAATACTGTTTCCAGCTTTACCAGTATGAAAAGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAATTCAGTAGACAATACTGTTTCCAGCTTTACCAGTATGAAAAGAG  385

seq1  AAAAATTACATTCAGGTTAACTTAGGAATAAAGTTGAATTTCCTGTATAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATTACATTCAGGTTAACTTAGGAATAAAGTTGAATTTCCTGTATAT  435

seq1  AATGAATCTCTATTCGAGAATTTTTTTTATTTGAGTCTTTATTAAAACAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAATCTCTATTCGAGAATTTTTTTTATTTGAGTCTTTATTAAAACAC  485

seq1  GAAAATAAAATGTACCAACAAACAAAAAGCCCAACTATGCCTTCTTTAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATAAAATGTACCAACAAACAAAAAGCCCAACTATGCCTTCTTTAAC  535

seq1  CATCTATTAATACATAAGCCCCTTAATTCAGCCAATGGTTATATTTTTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTATTAATACATAAGCCCCTTAATTCAGCCAATGGTTATATTTTTTT  585

seq1  AATTCTATTTAAAGTTAATTTGCCCTAATTCATTCTATCCACTTTTTCTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTATTTAAAGTTAATTTGCCCTAATTCATTCTATCCACTTTTTCTA  635

seq1  GAATTCTCTGCCCTCCTGGATAATTACTTTAGTAAAAGCTTAAGGAAACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGCCCTCCTGGATAATTACTTTAGTAAAAGCTTAAGGAAACA  685

seq1  TTGTTTGCTGAAAATGGCTTTCCTATATTAGTGGAGAAGCAGAACTGTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTGCTGAAAATGGCTTTCCTATATTAGTGGAGAAGCAGAACTGTGT  735

seq1  GGTTACTTAATAATTGGAACTAATTGAACTAAAATGCTTAATTTTTCACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTACTTAATAATTGGAACTAATTGAACTAAAATGCTTAATTTTTCACA  785

seq1  TGAGGTACAAAAGAGCAGCACAACGGAGTTGAATAAGGAGAGCAATTGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGTACAAAAGAGCAGCACAACGGAGTTGAATAAGGAGAGCAATTGAA  835

seq1  AGCATCACACATGGCACACCAACACACAGTTGCTATGGAAATATGCCAGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATCACACATGGCACACCAACACACAGTTGCTATGGAAATATGCCAGT  885

seq1  GCTGGTCACTCATGGGAGCAATGTGAGACATTCATCTGAATTGCTCTTTA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGTCACTCATGGGAGCAATGTGAGACATTCATCTGAATTGCTCTTTA  935

seq1  ATTTTAATACAAACAAATAAAAGCAGTCTTCCTTTTTCATTTTCTATTAT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAATACAAACAAATAAAAGCAGTCTTCCTTTTTCATTTTCTATTAT  985

seq1  CCACCATGGACACAATAAATAATTAATTTAAGAAAATGCTGCCTGTGTGA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCATGGACACAATAAATAATTAATTTAAGAAAATGCTGCCTGTGTGA  1035

seq1  CTTTCCTAGGGTGGTCACTATCCAGACTGATGGCAGCTAAGAAATCTCTT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCTAGGGTGGTCACTATCCAGACTGATGGCAGCTAAGAAATCTCTT  1085

seq1  GTTCAGAATTC  1111
      |||||||||||
seq2  GTTCAGAATTC  1096

seq1: chr1_65729086_65730237
seq2: B6Ng01-062N15.g_68_1188

seq1  GAATTCTTAGGCGTTCTGTCACCATCACCACCTAGGTCTTTAGAAAGCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTAGGCGTTCTGTCACCATCACCACCTAGGTCTTTAGAAAGCTC  50

seq1  TGAGGCAGTTATTCTAAATTGAATTGGAATGATTCCTTTTAAAATCTTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGCAGTTATTCTAAATTGAATTGGAATGATTCCTTTTAAAATCTTGT  100

seq1  TAATGTTTGTGCAGCAGTGCCCTGGGGTAAATGTAATAACCCCTTCATTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGTTTGTGCAGCAGTGCCCTGGGGTAAATGTAATAACCCCTTCATTG  150

seq1  CCCTTGTTATCCTGCATGGTAGGAGAGAGTTCTGATGTTTCTCCAGCTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTGTTATCCTGCATGGTAGGAGAGAGTTCTGATGTTTCTCCAGCTGG  200

seq1  CCTCAGTGCATCAGGATTCAAACCCAAATTGGATCCTGCTGTCACATAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAGTGCATCAGGATTCAAACCCAAATTGGATCCTGCTGTCACATAAA  250

seq1  TGCTGCTTTAATCAGAAACGAAGGACAGTAAATTAGTAAAATCTCTGAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGCTTTAATCAGAAACGAAGGACAGTAAATTAGTAAAATCTCTGAGA  300

seq1  ATCTTCTGATTCCTCAAAATAAGAATCAAGTCTGCAAAGAAGTTCATCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTCTGATTCCTCAAAATAAGAATCAAGTCTGCAAAGAAGTTCATCAT  350

seq1  TTGTGTTAAGTTGCTGTATTTAAGCCTGTGGCTGGTGATTAAATAACAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTTAAGTTGCTGTATTTAAGCCTGTGGCTGGTGATTAAATAACAGA  400

seq1  GCGAATGTTGTGGTATGTTTATTTCTATTAGGTCCCCATTTTTATTAATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGAATGTTGTGGTATGTTTATTTCTATTAGGTCCCCATTTTTATTAATT  450

seq1  TTCTTTTAACATAGGAACTTATTTAAGAAGAATATTACCATAAAGTTTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTTAACATAGGAACTTATTTAAGAAGAATATTACCATAAAGTTTGA  500

seq1  TATATATACTAGATATGCTAAAAATACACTAAATATACATTAAATTATCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATACTAGATATGCTAAAAATACACTAAATATACATTAAATTATCA  550

seq1  TACTTTATGGTAATATACTAAGTAGATAAGAGAAAAGAACATGATTTTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTATGGTAATATACTAAGTAGATAAGAGAAAAGAACATGATTTTTC  600

seq1  ATATTGTATTTTGAGTGCTTGAAAATACATTGGTGCTGAATGATGAAGTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTGTATTTTGAGTGCTTGAAAATACATTGGTGCTGAATGATGAAGTC  650

seq1  TTCCCTTCCAAAGTAGAATTAAAAAAAAAACAGTTTTTCATAAATCATGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTTCCAAAGTAGAATTAAAAAAAAAACAGTTTTTCATAAATCATGT  700

seq1  ACATACATGTGTTCATTTAATACTTGGATACACACATGCATGTACATGTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATACATGTGTTCATTTAATACTTGGATACACACATGCATGTACATGTG  750

seq1  TTCATTTAATACTTGCATGTACATAATGTGACTTAAATTCTACTTAAATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTTAATACTTGCATGTACATAATGTGACTTAAATTCTACTTAAATT  800

seq1  TAAATGTTGTTTATTTCCCTCCTGACTTTAGACCTGACCTAGAACTAGTG  850
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TAAATGTTGTTTATTTCTCTCCTGACTTTAGACCTGACCTAGAACTAGTG  850

seq1  AAATGAAAAACAACAACAACAACAACAACAAACATAGAGGAAGGTAGATA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGAAAAACAACAACAACAACAACAACAAACATAGAGGAAGGTAGATA  900

seq1  CAATGTCAGAAACCTAAGACTGAGGTCCCAATCCAGCCATGCTCATCTTG  950
      ||||||||| ||||| ||||||| ||||||||||||||||||||||| ||
seq2  CAATGTCAG-AACCT-AGACTGA-GTCCCAATCCAGCCATGCTCATC-TG  946

seq1  CAGGTCACAGCCACAGCCTCTCCAAGACTTAGATTATTAAGAGAGACCAA  1000
      || ||||||| ||||| |||||  |||||||||||| ||||||||||  |
seq2  CA-GTCACAG-CACAG-CTCTC--AGACTTAGATTA-TAAGAGAGAC--A  988

seq1  GTGGTGTATACTCATCCTAGGCAGACACATTTATCCAGTCTTCTGGCTGG  1050
      || |||||||||||||||| |||||||||||||| ||||||||| |||| 
seq2  GT-GTGTATACTCATCCTA-GCAGACACATTTATTCAGTCTTCT-GCTG-  1034

seq1  AACAGTCTTGTGTTTTGCCTGAGATTTGGAGCTGATGCTCTGCTAGCAAC  1100
       ||||||||| ||||   |||| | |||||||||||||||||||||||||
seq2  -ACAGTCTTG-GTTT--GCTGA-AATTGGAGCTGATGCTCTGCTAGCAAC  1079

seq1  CACCAAGTCATTATAAGTACCTCTCATGGCTTTAGACTTGCTGCCTTCTC  1150
      |||  |||||||| |||   ||||||| ||||  ||| ||||||| ||||
seq2  CAC--AGTCATTA-AAG--ACTCTCAT-GCTT--GAC-TGCTGCC-TCTC  1119

seq1  AA  1152
      ||
seq2  AA  1121