BAC Information

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BAC

Clone NameB6Ng01-062O14
Chromosome1 (Build37)
Map Location 190,372,455 - 190,536,208
singlet/doubletdoublet
Overlap geneUsh2a
Upstream geneEsrrg, 9330162B11Rik
Downstream geneKctd3, Kcnk2, LOC100042424, LOC100039307, Cenpf
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-062O14.bB6Ng01-062O14.g
ACCDH883163DH883164
length1,055848
definitionDH883163|Mus musculus domesticus DNA, BAC clone: B6Ng01-062O14, 5' end.DH883164|Mus musculus domesticus DNA, BAC clone: B6Ng01-062O14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(190,372,455 - 190,373,519)(190,535,354 - 190,536,208)
sequence
gaattcttcagttctgaaatctccaacaaatacatgttataccaagcctc
actgcttccaactcaattcaaccaactcttttcatgtctaccatgtattg
aagatagactcgcagtattgatcagtcaggcctgaaggaattggaataat
aaccaaaggcatttaaaaggaagtagactgcagcttaacaccgtagaaga
actaataagacatcagctaaacactgaagagaacaatttggccattttaa
tctttaagcacactcacagtgcacccagacttttccaacttgacattgtc
ttgtgcagaaaggtgagcatttatgggggaactgtgattacagtcctctt
tcatccaaatttggggcctatttctgggcatcttctggccattcagcaca
tgttcaaggaaacggcgattccttggcggggcagccagcaatttgttcat
gtttgttctctatctagcaaacacagtgaaatctacaaacccactggttc
acgttcactgacaacggcagtcagggtttcaggctcagcatgggagatgc
acattccgtgacgtttacggggttaatgctgctgtcactgactgatggtc
tttgctaatttgagtgtgaacccagtgtgcattcaaggtggatatttgag
atgacagagtacagagaaaatggcagagcacagactcttacctttacctg
ctggtttcgctgggacatattccatacctataaaatgattattatacagc
ccatgccagtgtctgggggctccagtgcatggaaagcaatgttttctttg
ctaccatctaacataaatgtttcctagtctatcttgttccaactcacaca
attcagggatgatgtcttttaccctctaccacttactcctactaatatta
gcctccattatctaggcatatcctatcgtgtacgaaagtttaaagtttac
tttatagctcaaagaatttagacatgtcggcctatataggcaaaaaaaaa
atatctgttatgtgccaaagtgggattgtatatctatgcatatgcagctt
tcaaa
gaattcaaagtctcaggcagggcctaggatttcctgtcaaacgggcaacg
tgtttggtagaatggagcagtatgattacaagcttaaaggtcccactgtg
cggggctgaggatgcgggcgtgagtggagatagacgcggcagtggctttt
gcttctgtagtaatgacggcggcagggagatatattgtcacctggttggg
agcgtgttgtcagtagaaagtaaggaagtcaaggcagtgttactattttc
agcctggctaactgaatggtaacctcattccggagctgataggcactgag
gcggggcacaggtaatgggggaggggcgataccgatctgtgtctcacgca
agtaatccatcttttgtgtgctgcgtggatcttttagtagagagatggag
ggagacatttcagatgtctgggtagagattacggatccatggcttttaaa
ggctcgtgaacttaactagagtctgagggcagaggagatgagtacagaat
agggagttggaacctgagtccagtaatctacctgtttaggaaaaaaacga
acagaaggtaccaagatggtaggtgccaagggaggaaaggtcaccaaagg
agaagagaagggctggtcaccagtgcccagtgtgctgagagttagggact
ggctctcagcgcacttggtgcatatttttagtcagtttttaacaagtgca
cacgtacgaatgctacacaacaggtgggaattaaaaattaagatactctt
cgctgtaactaagatcataacctttatttattttttatcgtattctttag
attgagggatgtgccatttactggattcttaaggactatttgtttgaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_190372455_190373519
seq2: B6Ng01-062O14.b_46_1100

seq1  GAATTCTTCAGTTCTGAAATCTCCAACAAATACATGTTATACCAAGCCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCAGTTCTGAAATCTCCAACAAATACATGTTATACCAAGCCTC  50

seq1  ACTGCTTCCAACTCAATTCAACCAACTCTTTTCATGTCTACCATGTATTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCTTCCAACTCAATTCAACCAACTCTTTTCATGTCTACCATGTATTG  100

seq1  AAGATAGACTCGCAGTATTGATCAGTCAGGCCTGAAGGAATTGGAATAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATAGACTCGCAGTATTGATCAGTCAGGCCTGAAGGAATTGGAATAAT  150

seq1  AACCAAAGGCATTTAAAAGGAAGTAGACTGCAGCTTAACACCGTAGAAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAAAGGCATTTAAAAGGAAGTAGACTGCAGCTTAACACCGTAGAAGA  200

seq1  ACTAATAAGACATCAGCTAAACACTGAAGAGAACAATTTGGCCATTTTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAATAAGACATCAGCTAAACACTGAAGAGAACAATTTGGCCATTTTAA  250

seq1  TCTTTAAGCACACTCACAGTGCACCCAGACTTTTCCAACTTGACATTGTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTAAGCACACTCACAGTGCACCCAGACTTTTCCAACTTGACATTGTC  300

seq1  TTGTGCAGAAAGGTGAGCATTTATGGGGGAACTGTGATTACAGTCCTCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGCAGAAAGGTGAGCATTTATGGGGGAACTGTGATTACAGTCCTCTT  350

seq1  TCATCCAAATTTGGGGCCTATTTCTGGGCATCTTCTGGCCATTCAGCACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCCAAATTTGGGGCCTATTTCTGGGCATCTTCTGGCCATTCAGCACA  400

seq1  TGTTCAAGGAAACGGCGATTCCTTGGCGGGGCAGCCAGCAATTTGTTCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCAAGGAAACGGCGATTCCTTGGCGGGGCAGCCAGCAATTTGTTCAT  450

seq1  GTTTGTTCTCTATCTAGCAAACACAGTGAAATCTACAAACCCACTGGTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTTCTCTATCTAGCAAACACAGTGAAATCTACAAACCCACTGGTTC  500

seq1  ACGTTCACTGACAACGGCAGTCAGGGTTTCAGGCTCAGCATGGGAGATGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTTCACTGACAACGGCAGTCAGGGTTTCAGGCTCAGCATGGGAGATGC  550

seq1  ACATTCCGTGACGTTTACGGGGTTAATGCTGCTGTCACTGACTGATGGTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTCCGTGACGTTTACGGGGTTAATGCTGCTGTCACTGACTGATGGTC  600

seq1  TTTGCTAATTTGAGTGTGAACCCAGTGTGCATTCAAGGTGGATATTTGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTAATTTGAGTGTGAACCCAGTGTGCATTCAAGGTGGATATTTGAG  650

seq1  ATGACAGAGTACAGAGAAAATGGCAGAGCACAGACTCTTACCTTTACCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACAGAGTACAGAGAAAATGGCAGAGCACAGACTCTTACCTTTACCTG  700

seq1  CTGGTTTCGCTGGGACATATTCCATACCTATAAAATGATTATTATACAGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTTTCGCTGGGACATATTCCATACCTATAAAATGATTATTATACAGC  750

seq1  CCATGCCAGTGTCTGGGGGCTCCAGTGCATGGAAAGCAATGTTTTCTTTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGCCAGTGTCTGGGGGCTCCAGTGCATGGAAAGCAATGTTTTCTTTG  800

seq1  CTACCATCCAACATAAATGTTTCCTAGTCTATCTTGTTCCAACTCACACA  850
      |||||||| |||||||||||||||||||||||||||||||||||||||| 
seq2  CTACCATCTAACATAAATGTTTCCTAGTCTATCTTGTTCCAACTCACAC-  849

seq1  AATTCAGGGATGATGTCTTTTACCCTCTACCACTTACTCCTACTAATAAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  AATTCAGGGATGATGTCTTTTACCCTCTACCACTTACTCCTACTAAT-AT  898

seq1  TAGCCTCCATTATCTAGGCATATCCTATCGTGTACGAAAGTTTAAAGTTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCTCCATTATCTAGGCATATCCTATCGTGTACGAAAGTTTAAAGTTT  948

seq1  ACTTTATAGCTCAAAGAATTTAGAACATGTCGGCCTATATAGGCAAAAAA  1000
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  ACTTTATAGCTCAAAGAATTTAG-ACATGTCGGCCTATATAGGCAAAAAA  997

seq1  AAAAAATATCCTGTTTATGTGCCAAAGTGGGATTGTAATTATCTATGCAT  1050
      |||| ||   ||| |||||||||||||||||||||||  |||||||||||
seq2  AAAATAT---CTG-TTATGTGCCAAAGTGGGATTGTA--TATCTATGCAT  1041

seq1  ATGCAGCTTTTCAAA  1065
      ||||||| |||||||
seq2  ATGCAGC-TTTCAAA  1055

seq1: chr1_190535354_190536208
seq2: B6Ng01-062O14.g_71_918 (reverse)

seq1  TTCAAACAAATAGTCCTTCAGAATTCAGTAAATGGCACATCCCTCAATCT  50
      |||||||||||||||||| ||||| |||||||||||||||||||||||||
seq2  TTCAAACAAATAGTCCTTAAGAATCCAGTAAATGGCACATCCCTCAATCT  50

seq1  AAAAGAATTAGATAAAATAATAAATAAAGGTTATGATCTTATGTTACAGC  100
       |||||||  ||||||| ||||||||||||||||||||||| ||||||| 
seq2  -AAAGAATACGATAAAA-AATAAATAAAGGTTATGATCTTA-GTTACAG-  96

seq1  CGATGTGTATCTTAAATTTTAATTCCCGCCTGTTGTGTAGCATTTTGTAC  150
      ||| | ||||||||| ||||||||||| |||||||||||||| || ||||
seq2  CGAAGAGTATCTTAATTTTTAATTCCCACCTGTTGTGTAGCA-TTCGTAC  145

seq1  GTGTGCACTTGTTAAAAACTGACTAAAAAATATGCACCAAGTGCGCTGAG  200
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  GTGTGCACTTGTTAAAAACTGACT-AAAAATATGCACCAAGTGCGCTGAG  194

seq1  AGCCAGTCCCTAACTCTCAGCACACTTGGCACTGGTGACCAGCCCTTCTC  250
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  AGCCAGTCCCTAACTCTCAGCACACTGGGCACTGGTGACCAGCCCTTCTC  244

seq1  TTCTCCTTTGGTGACCTTTCCTCCCTTGGCACCTACCATCTTGGTACCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCTTTGGTGACCTTTCCTCCCTTGGCACCTACCATCTTGGTACCTT  294

seq1  CTGTTCGTTTTTTTCCTACTACAGGTAGATTACTGGACTCAGGTTCCAAC  350
      ||||||||||||||||||  ||||||||||||||||||||||||||||||
seq2  CTGTTCGTTTTTTTCCTA-AACAGGTAGATTACTGGACTCAGGTTCCAAC  343

seq1  TCCCTATTCTGTACTCATCTCCTCTGCCCTCAGACTCTAGTTAAGTTCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTATTCTGTACTCATCTCCTCTGCCCTCAGACTCTAGTTAAGTTCAC  393

seq1  GAGCCTTTAAAAGCCATGGATCCGTAATCTCTACCCAGACATCTGAAATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCTTTAAAAGCCATGGATCCGTAATCTCTACCCAGACATCTGAAATG  443

seq1  TCTCCCTCCATCTCTCTACTAAAAGATCCACGCAGCACACAAAAGATGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCCTCCATCTCTCTACTAAAAGATCCACGCAGCACACAAAAGATGGA  493

seq1  TTACTTGCGTGAGACACAGATCGGTATCGCCCCTCCCCCATTACCTGTGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTTGCGTGAGACACAGATCGGTATCGCCCCTCCCCCATTACCTGTGC  543

seq1  CCCGCCTCAGTGCCTATCAGCTCCGGAATGAGGTTACCATTCAGTTAGCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGCCTCAGTGCCTATCAGCTCCGGAATGAGGTTACCATTCAGTTAGCC  593

seq1  AGGCTGAAAATAGTAACACTGCCTTGACTTCCTTACTTTCTACTGACAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGAAAATAGTAACACTGCCTTGACTTCCTTACTTTCTACTGACAAC  643

seq1  ACGCTCCCAACCAGGTGACAATATATCTCCCTGCCGCCGTCATTACTACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCTCCCAACCAGGTGACAATATATCTCCCTGCCGCCGTCATTACTACA  693

seq1  GAAGCAAAAGCCACTGCCGCGTCTATCTCCACTCACGCCCGCATCCTCAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCAAAAGCCACTGCCGCGTCTATCTCCACTCACGCCCGCATCCTCAG  743

seq1  CCCCGCACAGTGGGACCTTTAAGCTTGTAATCATACTGCTCCATTCTACC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCGCACAGTGGGACCTTTAAGCTTGTAATCATACTGCTCCATTCTACC  793

seq1  AAACACGTTGCCCGTTTGACAGGAAATCCTAGGCCCTGCCTGAGACTTTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACGTTGCCCGTTTGACAGGAAATCCTAGGCCCTGCCTGAGACTTTG  843

seq1  AATTC  855
      |||||
seq2  AATTC  848