BAC Information

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BAC

Clone NameB6Ng01-062P24
Chromosome1 (Build37)
Map Location 169,375,596 - 169,525,349
singlet/doubletdoublet
Overlap geneLrrc52
Upstream geneEG226601, EG226604, 4831428F09Rik, LOC240895, LOC622102, C030014K22Rik, Uck2, LOC100039844, Tmco1, Aldh9a1, Mgst3
Downstream geneRxrg, Lmx1a, LOC100039879, Pbx1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-062P24.bB6Ng01-062P24.g
ACCDH883227DH883228
length1,1261,091
definitionDH883227|Mus musculus domesticus DNA, BAC clone: B6Ng01-062P24, 5' end.DH883228|Mus musculus domesticus DNA, BAC clone: B6Ng01-062P24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(169,375,596 - 169,376,727)(169,524,237 - 169,525,349)
sequence
gaattctcttaacccttggatttttcatctctctcctccagcatttgctt
ctgggacatagtagttaaatacatgtttacttgctttaagggtgggcctt
cttgctacttcgatgaatccatcaagttttttggactttttatcccattc
tactgagctcaaaacagcacacatgggctggtggagcaggaagggaccaa
cctctgaaataaccaccaaatattttattttactagagggcttcagtctc
caagacagtgatggtaaaatgggagggcaagagagaaatcagggagccag
accagggaaggcacagtcggtggtgctctctgacagctagatcagttcag
ggaaccgacgaatggggcccaagtgtgtgttgcttcgaaaaatctggttg
gcgaatctactcccagtttcatcttcggtatcatccccgctcgacgttcg
gagggcattctggtacagcacagcacatacacccgtgagccaggcagcca
ccgtgccggcagcgaagatgcagaagccgatgagcagtaagaagatgtag
tcctgctggtccaggtgtgtgatgcacatgtactggagtggattccccac
cttcgtgatgggccaccctttcagctcagcaggctccgtacacgtggcgt
tctgggcatctgtgaagagaaacacagcaggcggggtgctgaaacatcag
gattcctagtgtcctaggccaaagggaagggctatctggagctcactgct
caaagtgtggcctatgggcacctagaccttgttagaaatatagaatctca
ggcccacactaggctgtcgggctcatctgctttgtaacaagagtcccggg
gcatctggcggcatactacagtttgaaaagtgccgtgtctgaaactccat
cttacacccagacttagctgcattcagacctctctctaaggaaggagatt
cctcaacagtgggcagaaggttgggacggaagcatggcatgttgggatct
ctgcaccaggctttaccagctttgtgcgtctgtccttttcagctaccctt
gcccgtcccgtctgttctctgtactatggctgagcgactcagcacacact
ttgtgggctgatgcttattgtctcct
gaattcaatccaggttctctggaagagcagcaggattttttaaccactga
cctgtctctttactcccagggtaagcacatttcttaacccagcgtggatg
cttcactactggacctcaacagaacctttgaactataggtagaggaaaat
gccaagggactgttgtcattgtcacaaagcacagggtccatacatgcaat
tttgcagctctctgatctggggcaagttaagctctttggggaaaaattac
ccctgtcatccatcacactgaaagcacctgacattgtttttattttgtgg
atcctgtatgatgagaactgggcatgcgatcatttttattctgtcaagca
aattcaaagaatcaatgctttcttgtttgttttctcacccgtacctcttt
cttgttggtcccttcagtctgaatattattccttctcatttagtttttcc
tatctgccaaaattcctacctatcattcaaattccagcccagttccacac
ctctacaggaaaatctgcctccagcctgggtctgtcaaatgtctgatgtg
ttccagtgagacttcacaggtgtgggctcgccacatccccaggactagct
ctgctttgcatacggttactttgctctgcataaatggttactggctttcc
tttgcatgtaccttgtgttcactgtgtaactgtttactctgcaaagacag
tgatggtggattttgtgagctcttccaacataaatgcaagaagatattcc
ataaataagatgaattttttaaaaatggctgtcatgtggctggagagaag
gctcggaagttaagaagagcactggctgctcttccagaggtcttgagttc
aattcccagcaaccacctggtggctcacaaccgtctgtaatgagatctga
tgccctcttctggcatgaaggttatatgaagatagagctctcaaaacaca
acaaaaagtttctgtgtttcatattcccaatgtacaatacacttagagca
cttccctgtgaagcttctatgaggctaccatctattgcaacctaacttta
ttgcaagttaaagaatggaaattcttttccttcagctgcct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_169375596_169376727
seq2: B6Ng01-062P24.b_49_1174

seq1  GAATTCTCTTAACCCTTGGATTTTTCATCTCTCTCCTCCAGCATTTGCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTTAACCCTTGGATTTTTCATCTCTCTCCTCCAGCATTTGCTT  50

seq1  CTGGGACATAGTAGTTAAATACATGTTTACTTGCTTTAAGGGTGGGCCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGACATAGTAGTTAAATACATGTTTACTTGCTTTAAGGGTGGGCCTT  100

seq1  CTTGCTACTTCGATGAATCCATCAAGTTTTTTGGACTTTTTATCCCATTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCTACTTCGATGAATCCATCAAGTTTTTTGGACTTTTTATCCCATTC  150

seq1  TACTGAGCTCAAAACAGCACACATGGGCTGGTGGAGCAGGAAGGGACCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGAGCTCAAAACAGCACACATGGGCTGGTGGAGCAGGAAGGGACCAA  200

seq1  CCTCTGAAATAACCACCAAATATTTTATTTTACTAGAGGGCTTCAGTCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGAAATAACCACCAAATATTTTATTTTACTAGAGGGCTTCAGTCTC  250

seq1  CAAGACAGTGATGGTAAAATGGGAGGGCAAGAGAGAAATCAGGGAGCCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGACAGTGATGGTAAAATGGGAGGGCAAGAGAGAAATCAGGGAGCCAG  300

seq1  ACCAGGGAAGGCACAGTCGGTGGTGCTCTCTGACAGCTAGATCAGTTCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGGGAAGGCACAGTCGGTGGTGCTCTCTGACAGCTAGATCAGTTCAG  350

seq1  GGAACCGACGAATGGGGCCCAAGTGTGTGTTGCTTCGAAAAATCTGGTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACCGACGAATGGGGCCCAAGTGTGTGTTGCTTCGAAAAATCTGGTTG  400

seq1  GCGAATCTACTCCCAGTTTCATCTTCGGTATCATCCCCGCTCGACGTTCG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGAATCTACTCCCAGTTTCATCTTCGGTATCATCCCCGCTCGACGTTCG  450

seq1  GAGGGCATTCTGGTACAGCACAGCACATACACCCGTGAGCCAGGCAGCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGCATTCTGGTACAGCACAGCACATACACCCGTGAGCCAGGCAGCCA  500

seq1  CCGTGCCGGCAGCGAAGATGCAGAAGCCGATGAGCAGTAAGAAGATGTAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTGCCGGCAGCGAAGATGCAGAAGCCGATGAGCAGTAAGAAGATGTAG  550

seq1  TCCTGCTGGTCCAGGTGTGTGATGCACATGTACTGGAGTGGATTCCCCAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGCTGGTCCAGGTGTGTGATGCACATGTACTGGAGTGGATTCCCCAC  600

seq1  CTTCGTGATGGGCCACCCTTTCAGCTCAGCAGGCTCCGTACACGTGGCGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCGTGATGGGCCACCCTTTCAGCTCAGCAGGCTCCGTACACGTGGCGT  650

seq1  TCTGGGCATCTGTGAAGAGAAACACAGCAGGCGGGGTGCTGAAACATCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGGCATCTGTGAAGAGAAACACAGCAGGCGGGGTGCTGAAACATCAG  700

seq1  GATTCCTAGTGTCCTAGGCCAAAGGGAAGGGCTATCTGGAGCTCACTGCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCCTAGTGTCCTAGGCCAAAGGGAAGGGCTATCTGGAGCTCACTGCT  750

seq1  CAAAGTGTGGCCTATGGGCACCTAGACCTTGTTAGAAATATAGAATCTCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGTGTGGCCTATGGGCACCTAGACCTTGTTAGAAATATAGAATCTCA  800

seq1  GGCCCACACTAGGCTGTCGGGCTCATCTGCTTTGTAACAAGAGTCCCGGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCACACTAGGCTGTCGGGCTCATCTGCTTTGTAACAAGAGTCCCGGG  850

seq1  GCATCTGGCGGCATACTACAGTTTGAAAAGTGCCGTGTCTGAAACTCCAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCTGGCGGCATACTACAGTTTGAAAAGTGCCGTGTCTGAAACTCCAT  900

seq1  CTTACACCCAGACTTAGCTGCATTCAGACC-CTCTCTAAGGGAAGGAGAT  949
      |||||||||||||||||||||||||||||| |||||||| ||||||||||
seq2  CTTACACCCAGACTTAGCTGCATTCAGACCTCTCTCTAA-GGAAGGAGAT  949

seq1  TCCCCAACAGTGGGCAGAAGGTTGGGAACGGAAGCATGGCATGTTGGGAT  999
      ||| |||||||||||||||||||||| |||||||||||||||||||||||
seq2  TCCTCAACAGTGGGCAGAAGGTTGGG-ACGGAAGCATGGCATGTTGGGAT  998

seq1  CTCTGCACCAGGCTTTACCAGCTTTGTGCGTCTGTCCTTTTCAGCCTACC  1049
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  CTCTGCACCAGGCTTTACCAGCTTTGTGCGTCTGTCCTTTTCAG-CTACC  1047

seq1  CTTGCCCGTCCCCGTCTG-TCTCTGTACTAGTGCCTGAGCCGACTCAGGC  1098
      ||||||||| |||||||| ||||||||||| || ||||| ||||||| ||
seq2  CTTGCCCGT-CCCGTCTGTTCTCTGTACTA-TGGCTGAG-CGACTCA-GC  1093

seq1  AC-CACTTTGTGGGCTGAATGCTAATTGTCCTCCT  1132
      || |||||||||||||| ||||| ||||| |||||
seq2  ACACACTTTGTGGGCTG-ATGCTTATTGT-CTCCT  1126

seq1: chr1_169524237_169525349
seq2: B6Ng01-062P24.g_68_1158 (reverse)

seq1  AGGCAGACTGAAGAGAAAAGAATTTCCACATTTCTTTTAACTTTGCATAA  50
      |||||| |||||| ||||||||||||||   ||| ||||||||   ||||
seq2  AGGCAG-CTGAAG-GAAAAGAATTTCCA---TTC-TTTAACTTGCAATAA  44

seq1  AGTTTAGGTTGCAATATGATGGTAAGCCTCATAGAAGGCATCACAGGGGA  100
      || ||||||||||||| |||||| |||||||||||| || ||||| ||||
seq2  AG-TTAGGTTGCAATA-GATGGT-AGCCTCATAGAA-GCTTCACA-GGGA  89

seq1  AGTGCTCTTAAGTGTTATTGGTACATTGGGGAATATTGAAAGCACAGAAA  150
      ||||||| |||||| |||| ||||||| ||||||| ||||| ||||||||
seq2  AGTGCTC-TAAGTG-TATT-GTACATT-GGGAATA-TGAAA-CACAGAAA  133

seq1  CCTTTTTTGTTGTTGTTTATGAGAGCTCTATCTTCATATAAACCTTCATG  200
      |  ||||||||| ||||| |||||||||||||||||||| ||||||||||
seq2  C--TTTTTGTTG-TGTTT-TGAGAGCTCTATCTTCATAT-AACCTTCATG  178

seq1  CCAGAAGAGGGCATCAGATCTCATTACAGACGGTTGTGAGCCACCAGGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAAGAGGGCATCAGATCTCATTACAGACGGTTGTGAGCCACCAGGTG  228

seq1  GTTGCTGGGAATTGAACTCAAGACCTCTGGAAGAGCAGCCAGTGCTCTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCTGGGAATTGAACTCAAGACCTCTGGAAGAGCAGCCAGTGCTCTTC  278

seq1  TTAACTTCCGAGCCTTCTCTCCAGCCACATGACAGCCATTTTTAAAAAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACTTCCGAGCCTTCTCTCCAGCCACATGACAGCCATTTTTAAAAAAT  328

seq1  TCATCTTATTTATGGAATATCTTCTTGCATTTATGTTGGAAGAGCTCACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCTTATTTATGGAATATCTTCTTGCATTTATGTTGGAAGAGCTCACA  378

seq1  AAATCCACCATCACTGTCTTTGCAGAGTAAACAGTTACACAGTGAACACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCCACCATCACTGTCTTTGCAGAGTAAACAGTTACACAGTGAACACA  428

seq1  AGGTACATGCAAAGGAAAGCCAGTAACCATTTATGCAGAGCAAAGTAACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTACATGCAAAGGAAAGCCAGTAACCATTTATGCAGAGCAAAGTAACC  478

seq1  GTATGCAAAGCAGAGCTAGTCCTGGGGATGTGGCGAGCCCACACCTGTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGCAAAGCAGAGCTAGTCCTGGGGATGTGGCGAGCCCACACCTGTGA  528

seq1  AGTCTCACTGGAACACATCAGACATTTGACAGACCCAGGCTGGAGGCAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTCACTGGAACACATCAGACATTTGACAGACCCAGGCTGGAGGCAGA  578

seq1  TTTTCCTGTAGAGGTGTGGAACTGGGCTGGAATTTGAATGATAGGTAGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCTGTAGAGGTGTGGAACTGGGCTGGAATTTGAATGATAGGTAGGA  628

seq1  ATTTTGGCAGATAGGAAAAACTAAATGAGAAGGAATAATATTCAGACTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGGCAGATAGGAAAAACTAAATGAGAAGGAATAATATTCAGACTGA  678

seq1  AGGGACCAACAAGAAAGAGGTACGGGTGAGAAAACAAACAAGAAAGCATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGACCAACAAGAAAGAGGTACGGGTGAGAAAACAAACAAGAAAGCATT  728

seq1  GATTCTTTGAATTTGCTTGACAGAATAAAAATGATCGCATGCCCAGTTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCTTTGAATTTGCTTGACAGAATAAAAATGATCGCATGCCCAGTTCT  778

seq1  CATCATACAGGATCCACAAAATAAAAACAATGTCAGGTGCTTTCAGTGTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCATACAGGATCCACAAAATAAAAACAATGTCAGGTGCTTTCAGTGTG  828

seq1  ATGGATGACAGGGGTAATTTTTCCCCAAAGAGCTTAACTTGCCCCAGATC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGATGACAGGGGTAATTTTTCCCCAAAGAGCTTAACTTGCCCCAGATC  878

seq1  AGAGAGCTGCAAAATTGCATGTATGGACCCTGTGCTTTGTGACAATGACA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGCTGCAAAATTGCATGTATGGACCCTGTGCTTTGTGACAATGACA  928

seq1  ACAGTCCCTTGGCATTTTCCTCTACCTATAGTTCAAAGGTTCTGTTGAGG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTCCCTTGGCATTTTCCTCTACCTATAGTTCAAAGGTTCTGTTGAGG  978

seq1  TCCAGTAGTGAAGCATCCACGCTGGGTTAAGAAATGTGCTTACCCTGGGA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGTAGTGAAGCATCCACGCTGGGTTAAGAAATGTGCTTACCCTGGGA  1028

seq1  GTAAAGAGACAGGTCAGTGGTTAAAAAATCCTGCTGCTCTTCCAGAGAAC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAGAGACAGGTCAGTGGTTAAAAAATCCTGCTGCTCTTCCAGAGAAC  1078

seq1  CTGGATTGAATTC  1113
      |||||||||||||
seq2  CTGGATTGAATTC  1091