BAC Information

Click to search

BAC

Clone NameB6Ng01-063B04
Chromosome1 (Build37)
Map Location 157,109,811 - 157,300,806
singlet/doubletdoublet
Overlap geneXpr1
Upstream geneCacna1e, LOC671336, Ier5, Mr1, Stx6, EG667867, BC034090
Downstream geneEG433367, Acbd6, Lhx4, Qscn6, Cep350, LOC676894, Tor1aip1, Ifrg15, Tor1aip2, A230106N23Rik, Tdrd5, Nphs2, 9430070O13Rik, LOC100038991
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-063B04.bB6Ng01-063B04.g
ACCDH883281DH883282
length1,0481,054
definitionDH883281|Mus musculus domesticus DNA, BAC clone: B6Ng01-063B04, 5' end.DH883282|Mus musculus domesticus DNA, BAC clone: B6Ng01-063B04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(157,109,811 - 157,110,670)(157,299,732 - 157,300,806)
sequence
gaattcattagtgaagctacccaacctaggcttttttttttttttttttt
tttttttttttttttttttgaggcagggtttctctgtgtagccctggctg
acctggaactcattctgtaaacaagggtggcctccaactcaaaaattagc
ctgcctctgcctcccaagttctgggattaaaggcatgtgtcaccactgca
caacctgtagcccaggctggccttgaactcgtgatcctcctgcctcttca
gcaaatcctaccggcgtgagccaccactaccggtgacggcggcttttaat
tactaattaatacaatttcaatattgcttcttggtttgctccggttttct
agctcattatgattccgtctgaggcaggcgtgcatacctaaggaatttct
ctatctctttttacattcattggcatgagctgttcatggctatttctagt
gatcttttctctctctgtagcatcagtcgaatgtctctggtttcacttta
aaaactatttttttagacttacttatttccattttatgtgtatgagcatt
ttccttgcttgtatgtgtatgtacgatctacgtgccttcgattggttgtg
agccaccatgtgggtgatgaaaacagaccctggactttttgtaagaatag
caagtgctcttaactatttaactttctctccaacacttttgtttttattg
atttttatcttgtttatttatttgagacactatctagttctggttgtccc
ggaacttgctctgtagactaggctggcctccactcacagagatttgcctg
cccctacctccccaagctgggattaaaggtgcacctttgccactgcctgg
caatgcccggaactggactccagctcttcgtccactttacttcctgagct
tccccctttgctcctttttttttaaataagtattttcttcaccttacatt
tccatgctatcccaaaattccccatacctacccccccccacttccctacc
accaaccacttcttggtctgcgttcctgtactaggcttataaagtttg
gaattcttactcgccgcataaccaatttcattccagttaagcccgaatct
agacccagcctgtttcctgctataactggaaattctcatggttctcgtga
ctcagctgctcctttcctaacggaggtgaagtgtatgggtttcctggtct
ctctgtcacatggaccaacacggtgcgttcttatgtaggctaagcttcga
atgctgaagtttgactcaatcggcatgtgctggccaggtcattaacaagc
tccagcaggttaaaaccgtgtcagctgttctgcagcaagactctggatcc
tggcccatgacctgcctggaagagaaactgctgagtgttattcccagtgg
cctggctgaacccttaggaagaagtgtctgagaatgcacagggactgaag
gcagagctgctgtcgttcttcggggacagagtattactctctacaagggt
gccctgtttgggaaaaacccacatctacctcctagaaatactgtgtttct
tcagcagggagaggagccagaactgacaggatcctgcctattccattgac
tgtccaaaattcttcctaaaaaagacactcctgtgcctgccagaggccca
gagtttccctacagtctaaactctgaattcaacagatcctttttgctatt
tattgcatgatgatctggatacaaaatcatttgcttaccagaatttatga
cttccttctcccttgggtgactgaatacccatgtctatggctactccagt
catcaggacagaagatcatatatactgtatggctatcatgtaatagtcat
agtttgacagtgttatatctaaattctgtcaaacctgacatgacttccag
aaaagggacataccacatcctgtatcctgaacagtcagacatacaaccta
gaaactcctcaaatataaagcccattctatccagactgacctggctctga
gtcagtgagcatatagaaagtgatgagcatagaccagagccatatcgctg
aaagtagctggggctaggaagcgctcagtaaaaaggctgccacacaaaat
tgag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_157109811_157110670
seq2: B6Ng01-063B04.b_247_1093

seq1  AACCTGTAGCCCAGGCTGGCCTTGAACTCGTGATCCTCCTGCCTCTTCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTGTAGCCCAGGCTGGCCTTGAACTCGTGATCCTCCTGCCTCTTCAG  50

seq1  CAAATCCTACCGGCGTGAGCCACCACTACCGGTGACGGCGGCTTTTAATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATCCTACCGGCGTGAGCCACCACTACCGGTGACGGCGGCTTTTAATT  100

seq1  ACTAATTAATACAATTTCAATATTGCTTCTTGGTTTGCTCCGGTTTTCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAATTAATACAATTTCAATATTGCTTCTTGGTTTGCTCCGGTTTTCTA  150

seq1  GCTCATTATGATTCCGTCTGAGGCAGGCGTGCATACCTAAGGAATTTCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCATTATGATTCCGTCTGAGGCAGGCGTGCATACCTAAGGAATTTCTC  200

seq1  TATCTCTTTTTACATTCATTGGCATGAGCTGTTCATGGCTATTTCTAGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTCTTTTTACATTCATTGGCATGAGCTGTTCATGGCTATTTCTAGTG  250

seq1  ATCTTTTCTCTCTCTGTAGCATCAGTCGAATGTCTCTGGTTTCACTTTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTTCTCTCTCTGTAGCATCAGTCGAATGTCTCTGGTTTCACTTTAA  300

seq1  AAGCTATTTTTTTAGACTTACTTATTTCCATTTTATGTGTATGAGCATTT  350
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTATTTTTTTAGACTTACTTATTTCCATTTTATGTGTATGAGCATTT  350

seq1  TCCTTGCTTGTATGTGTATGTACGATCTACGTGCCTTCGATTGGTTGTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTGCTTGTATGTGTATGTACGATCTACGTGCCTTCGATTGGTTGTGA  400

seq1  GCCACCATGTGGGTGATGAGAACAGACCCTGGACTTTTTGTAAGAATAGC  450
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  GCCACCATGTGGGTGATGAAAACAGACCCTGGACTTTTTGTAAGAATAGC  450

seq1  AAGTGCTCTTAACTATTTAACTTTCTCTCCAGCACTTTTGTTTTTATTGA  500
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  AAGTGCTCTTAACTATTTAACTTTCTCTCCAACACTTTTGTTTTTATTGA  500

seq1  TTTTTATCTTGTTTATTTATTTGAGACACTATCTAGTTCTGGTTGTCCTG  550
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TTTTTATCTTGTTTATTTATTTGAGACACTATCTAGTTCTGGTTGTCCCG  550

seq1  GAACTTGCTCTGTAGACTAGGCTGGCTTCAACTCACAGAGATTTGCCTGC  600
      |||||||||||||||||||||||||| || ||||||||||||||||||||
seq2  GAACTTGCTCTGTAGACTAGGCTGGCCTCCACTCACAGAGATTTGCCTGC  600

seq1  CTCTACCTCCCCAAGCTGGGATTAAAGGTGCACCTTTGCCACTGCCTGGC  650
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTACCTCCCCAAGCTGGGATTAAAGGTGCACCTTTGCCACTGCCTGGC  650

seq1  AATGCCCGGAACTGGACTCCAGCTC-TCGTCCACTTTACCTCCTGAGCTT  699
      ||||||||||||||||||||||||| ||||||||||||| ||||||||||
seq2  AATGCCCGGAACTGGACTCCAGCTCTTCGTCCACTTTACTTCCTGAGCTT  700

seq1  CCCCCTTTGCCTCCTTTTTTTTTTAAATTAGGTATTTTCTTCA-CTTACA  748
      ||||||||| |||||||||||||  || || |||||||||||| ||||||
seq2  CCCCCTTTG-CTCCTTTTTTTTT--AAATAAGTATTTTCTTCACCTTACA  747

seq1  TTTCCAATGCTATCCCAAAAGTCCCCCATACCCTACCCCCCCCCACTCCC  798
      ||||| |||||||||||||| | ||||||| |||||||||||||||| ||
seq2  TTTCC-ATGCTATCCCAAAA-TTCCCCATA-CCTACCCCCCCCCACTTCC  794

seq1  CTACCCACCCACACCCACTTCTTGGCTCTGGCGTTCCCCTGTACTGAGGC  848
      ||| ||||   || ||||||||||| ||| |||||  |||||||| ||||
seq2  CTA-CCAC---CAACCACTTCTTGG-TCT-GCGTT--CCTGTACT-AGGC  835

seq1  ATATAAAGTTTG  860
       |||||||||||
seq2  TTATAAAGTTTG  847

seq1: chr1_157299732_157300806
seq2: B6Ng01-063B04.g_70_1123 (reverse)

seq1  CTCATTTTTGTGTGGCAAGCACTTTTTTTACTGAGCTGTCTTCCTAGCCC  50
      |||| ||||||||||||  |    ||||||||||||   |||||||| ||
seq2  CTCAATTTTGTGTGGCAGCC----TTTTTACTGAGC--GCTTCCTAG-CC  43

seq1  CCAGCCTACTTTCAAGCGATATGGGCCTCCTTGGTCTTATGCTCATCACT  100
      |||| |||||||| ||||||||||  |||  ||||| |||||||||||||
seq2  CCAG-CTACTTTC-AGCGATATGG--CTC--TGGTC-TATGCTCATCACT  86

seq1  TTCCTATATTGCTCACTGACTCAGAAGCCAGGTCAGTCTGGATAGAATGG  150
      || ||||| ||||||||||||||| |||||||||||||||||||||||||
seq2  TT-CTATA-TGCTCACTGACTCAG-AGCCAGGTCAGTCTGGATAGAATGG  133

seq1  GCCTTTTATATTTGAGGAGTTTCTAGGTTGTATTGTCTGACTGTTCAGGA  200
      ||  |||||||||||||||||||||||||||| |||||||||||||||||
seq2  GC--TTTATATTTGAGGAGTTTCTAGGTTGTA-TGTCTGACTGTTCAGGA  180

seq1  TACAGGATGTGGTATGTCCCTTTTCTGGAAGTCATGTCAGGTTTGACAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGGATGTGGTATGTCCCTTTTCTGGAAGTCATGTCAGGTTTGACAGA  230

seq1  ATTTAGATATAACACTGTCAAAACTATGACTATTACATGATAGCCATACA  300
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  ATTTAGATATAACACTGTC-AAACTATGACTATTACATGATAGCCATACA  279

seq1  GTATATATGATCTTCTGTCCTGATGACTGGAGTAGCCATAGACATGGGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATATATGATCTTCTGTCCTGATGACTGGAGTAGCCATAGACATGGGTA  329

seq1  TTCAGTCACCCAAGGGAGAAGGAAGTCATAAATTCTGGTAAGCAAATGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTCACCCAAGGGAGAAGGAAGTCATAAATTCTGGTAAGCAAATGAT  379

seq1  TTTGTATCCAGATCATCATGCAATAAATAGCAAAAAGGATCTGTTGAATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTATCCAGATCATCATGCAATAAATAGCAAAAAGGATCTGTTGAATT  429

seq1  CAGAGTTTAGACTGTAGGGAAACTCTGGGCCTCTGGCAGGCACAGGAGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGTTTAGACTGTAGGGAAACTCTGGGCCTCTGGCAGGCACAGGAGTG  479

seq1  TCTTTTTTAGGAAGAATTTTGGACAGTCAATGGAATAGGCAGGATCCTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTTTAGGAAGAATTTTGGACAGTCAATGGAATAGGCAGGATCCTGT  529

seq1  CAGTTCTGGCTCCTCTCCCTGCTGAAGAAACACAGTATTTCTAGGAGGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTCTGGCTCCTCTCCCTGCTGAAGAAACACAGTATTTCTAGGAGGTA  579

seq1  GATGTGGGTTTTTCCCAAACAGGGCACCCTTGTAGAGAGTAATACTCTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTGGGTTTTTCCCAAACAGGGCACCCTTGTAGAGAGTAATACTCTGT  629

seq1  CCCCGAAGAACGACAGCAGCTCTGCCTTCAGTCCCTGTGCATTCTCAGAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCGAAGAACGACAGCAGCTCTGCCTTCAGTCCCTGTGCATTCTCAGAC  679

seq1  ACTTCTTCCTAAGGGTTCAGCCAGGCCACTGGGAATAACACTCAGCAGTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTTCCTAAGGGTTCAGCCAGGCCACTGGGAATAACACTCAGCAGTT  729

seq1  TCTCTTCCAGGCAGGTCATGGGCCAGGATCCAGAGTCTTGCTGCAGAACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTCCAGGCAGGTCATGGGCCAGGATCCAGAGTCTTGCTGCAGAACA  779

seq1  GCTGACACGGTTTTAACCTGCTGGAGCTTGTTAATGACCTGGCCAGCACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGACACGGTTTTAACCTGCTGGAGCTTGTTAATGACCTGGCCAGCACA  829

seq1  TGCCGATTGAGTCAAACTTCAGCATTCGAAGCTTAGCCTACATAAGAACG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCGATTGAGTCAAACTTCAGCATTCGAAGCTTAGCCTACATAAGAACG  879

seq1  CACCGTGTTGGTCCATGTGACAGAGAGACCAGGAAACCCATACACTTCAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCGTGTTGGTCCATGTGACAGAGAGACCAGGAAACCCATACACTTCAC  929

seq1  CTCCGTTAGGAAAGGAGCAGCTGAGTCACGAGAACCATGAGAATTTCCAG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCGTTAGGAAAGGAGCAGCTGAGTCACGAGAACCATGAGAATTTCCAG  979

seq1  TTATAGCAGGAAACAGGCTGGGTCTAGATTCGGGCTTAACTGGAATGAAA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAGCAGGAAACAGGCTGGGTCTAGATTCGGGCTTAACTGGAATGAAA  1029

seq1  TTGGTTATGCGGCGAGTAAGAATTC  1075
      |||||||||||||||||||||||||
seq2  TTGGTTATGCGGCGAGTAAGAATTC  1054