BAC Information

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BAC

Clone NameB6Ng01-063E16
Chromosome1 (Build37)
Map Location 114,785,774 - 114,939,953
singlet/doubletdoublet
Overlap genenone
Upstream geneEG626897, LOC666615, LOC666635
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-063E16.bB6Ng01-063E16.g
ACCDH883431DH883432
length1,0791,079
definitionDH883431|Mus musculus domesticus DNA, BAC clone: B6Ng01-063E16, 5' end.DH883432|Mus musculus domesticus DNA, BAC clone: B6Ng01-063E16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(114,785,774 - 114,786,870)(114,938,842 - 114,939,953)
sequence
gaattcaattatttcataaagtgtagccatgcagcaaatgttgtgctcat
tttagaataattagcacattgatactgcttgtgtagttaaaaggaaatgt
ttaaatttccccattgtaagcactttttgaagggtcactctgttctctaa
agtgagaaatttttcattccaaaggaagctagtagctctatcttccctgg
atttaattttcctcctcttatacttgaattaaaaacactaatgcctattc
tgacaagtcttaatcacaggcctggaggaagtgaagactcctccatagat
ttgtttaaatgattcatttattgcaagttcctccttctagctcttttgaa
taattaaggatgagctaaagagatgtaaaatctgtcacttatatgtcttc
agttaacatgctcaccaaaattgggcattctcacatgccttttcacaatc
tataaaagaaagagatgcctgtggaataggaatgaactagcatttgcagt
ttctgaggcactagatggacttccaattttactttaaaaaaatttatttt
aactttaacactttttttattttttataaacatacaataaaatgtatgtg
tttcaaggtagtcaccagggccaaaagatggcatcagaacaaaaaattca
atgggaaaattacagttcatttcacaaaatttccaggttgtgtatagagt
attagaaaaagaaacaggtgaaatattctgctttgaagaaatagtaatcc
agggtgacacattgttttcctgaaaaagaacacaaaacaaacaaacaaaa
ttaaactaaaatagaaggacagctaatgggaatctggacaatctacagtc
actgctgcattttgttgctagatccagtaaattgaattctgctatatatt
accttaacatgtgagaaaaccttcacaaagaacattttgctatatgactc
catactgaacagaagaagaacatgagaaaatgtatgtgatggtttgacat
cgctactgatagtcagatagtacaatctttggtagtttggataatatctc
tgaggatactgaagatctctgacttacag
gaattctttatcttctctaattctcagattgtagtgcattataatgctaa
tggtttgctctagatttttctcatccatactatgagaagcttttatatgt
ggaactgaatagctaaattctctttccatggaagaaagtgtccctgcttc
acaaatctggattatttaaaatatcattgtttgaaaggcttagctttata
tatcacagcaattcattcattttcaaacatttatgcatgaggtagaagaa
ttataatttacaatactgtttgtaatttaaaatacattaaacccaaattc
taataaccttgtaattgaaatacatgctcttcaaaaaatgtagtatataa
ataagccataatattgctatatgactccaatacaaattcagaaatgatgg
ttattatgcttatttttagtttctggaattgcgtgaaatatacaatgttt
atgcttttcataactgtgataaaccaccttgaccaaaagaaactttgatg
aggaaatacttgcaaatccagatcacagtgcaagactgaatgcagccagg
gtagaagtttgggtagaaaggaggaacactttttgctgacttgtttgtac
aagttcatttattttttcctatgtagtgaaggaccacctactcagcaatg
gttctacttacagtaggctgtgtctttctgaatcagttaacaatcaaggc
aatcctcacatacaggctcacagtccaatccgatctgggtgatctcttga
tctgatctgggtcttcccaaatgactccagactgtgtcatgataaaaggg
aaacctaattaggataggggtcgtagttgattgacattttgcattcttct
gtatctccctgaaatggttagttcaatattttcagaaattatcatatttt
tcagttaaactttatttccttcttcaaaatttggatatgctcaaggaaga
aaagagatagggatgatttctgtaacagtacgaaagactagacatataca
cttctactgatagaagcatacatcagacaatctcagtagtggatgaaacc
agaaacacaagttctgatacgataggcag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_114785774_114786870
seq2: B6Ng01-063E16.b_45_1123

seq1  GAATTCAATTATTTCATAAAGTGTAGCCATGCAGCAAATGTTGTGCTCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATTATTTCATAAAGTGTAGCCATGCAGCAAATGTTGTGCTCAT  50

seq1  TTTAGAATAATTAGCACATTGATACTGCTTGTGTAGTTAAAAGGAAATGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGAATAATTAGCACATTGATACTGCTTGTGTAGTTAAAAGGAAATGT  100

seq1  TTAAATTTCCCCATTGTAAGCACTTTTTGAAGGGTCACTCTGTTCTCTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATTTCCCCATTGTAAGCACTTTTTGAAGGGTCACTCTGTTCTCTAA  150

seq1  AGTGAGAAATTTTTCATTCCAAAGGAAGCTAGTAGCTCTATCTTCCCTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAGAAATTTTTCATTCCAAAGGAAGCTAGTAGCTCTATCTTCCCTGG  200

seq1  ATTTAATTTTCCTCCTCTTATACTTGAATTAAAAACACTAATGCCTATTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAATTTTCCTCCTCTTATACTTGAATTAAAAACACTAATGCCTATTC  250

seq1  TGACAAGTCTTAATCACAGGCCTGGAGGAAGTGAAGACTCCTCCATAGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAAGTCTTAATCACAGGCCTGGAGGAAGTGAAGACTCCTCCATAGAT  300

seq1  TTGTTTAAATGATTCATTTATTGCAAGTTCCTCCTTCTAGCTCTTTTGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTAAATGATTCATTTATTGCAAGTTCCTCCTTCTAGCTCTTTTGAA  350

seq1  TAATTAAGGATGAGCTAAAGAGATGTAAAATCTGTCACTTATATGTCTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTAAGGATGAGCTAAAGAGATGTAAAATCTGTCACTTATATGTCTTC  400

seq1  AGTTAACATGCTCACCAAAATTGGGCATTCTCACATGCCTTTTCACAATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAACATGCTCACCAAAATTGGGCATTCTCACATGCCTTTTCACAATC  450

seq1  TATAAAAGAAAGAGATGCCTGTGGAATAGGAATGAACTAGCATTTGCAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAAAGAAAGAGATGCCTGTGGAATAGGAATGAACTAGCATTTGCAGT  500

seq1  TTCTGAGGCACTAGATGGACTTCCAATTTTACTTTAAAAAAATTTATTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGAGGCACTAGATGGACTTCCAATTTTACTTTAAAAAAATTTATTTT  550

seq1  AACTTTAACACTTTTTTTATTTTTTATAAACATACAATAAAATGTATGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTAACACTTTTTTTATTTTTTATAAACATACAATAAAATGTATGTG  600

seq1  TTTCAAGGTAGTCACCAGGGCCAAAAGATGGCATCAGAACAAAAAATTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAAGGTAGTCACCAGGGCCAAAAGATGGCATCAGAACAAAAAATTCA  650

seq1  ATGGGAAAATTACAGTTCATTTCACAAAATTTCCAGGTTGTGTATAGAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGAAAATTACAGTTCATTTCACAAAATTTCCAGGTTGTGTATAGAGT  700

seq1  ATTAGAAAAAGAAACAGGTGAAATATTCTGCTTTGAAGAAATAGTAATCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGAAAAAGAAACAGGTGAAATATTCTGCTTTGAAGAAATAGTAATCC  750

seq1  AGGGTGACACATTGTTTTCCTGAAAAAGAACACAAAACAAACAAACAAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTGACACATTGTTTTCCTGAAAAAGAACACAAAACAAACAAACAAAA  800

seq1  TTAAACTAAAATAGAAGGACAGCTAATGGGAATCTGGACAATCTACAGTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAACTAAAATAGAAGGACAGCTAATGGGAATCTGGACAATCTACAGTC  850

seq1  ACTGCTGCATTTTGTTGCTAAGATCCAGTAAATTGAATTCTGCTATATAT  900
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  ACTGCTGCATTTTGTTGCT-AGATCCAGTAAATTGAATTCTGCTATATAT  899

seq1  TACCTTAACATGTGAGAAAAACCTTCACAAAGAACATTTTGCTATATGAC  950
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TACCTTAACATGTGAG-AAAACCTTCACAAAGAACATTTTGCTATATGAC  948

seq1  TCCATACTGAACAGAAGAAGAAACATGAGGAAAAATGTATGTGATTGGTT  1000
      |||||||||||||||||||| ||||||||  ||||||||||||||  | |
seq2  TCCATACTGAACAGAAGAAG-AACATGAG--AAAATGTATGTGAT--GGT  993

seq1  TTGAACAATCGCTTACTGATAGTCAGATTAAGTACAAATCTTTGTTAGGT  1050
      ||||   ||||| |||||||||||||||  ||||| |||||||| || ||
seq2  TTGA--CATCGC-TACTGATAGTCAGAT--AGTAC-AATCTTTGGTA-GT  1036

seq1  TTGGATAATAATCTCTGAGGATAACTGAGAGATCTCTGACTTTACAG  1097
      ||||||||| |||||||||||| ||||| ||||||||||| ||||||
seq2  TTGGATAAT-ATCTCTGAGGAT-ACTGA-AGATCTCTGAC-TTACAG  1079

seq1: chr1_114938842_114939953
seq2: B6Ng01-063E16.g_68_1146 (reverse)

seq1  CTGCCTATCGGTAATCAGGAACTTTGTGTTTTTTGGTTTCATCCACCTAC  50
      ||||||||||   |||| |||| ||||| ||| |||||||||||| ||||
seq2  CTGCCTATCG--TATCA-GAAC-TTGTG-TTTCTGGTTTCATCCA-CTAC  44

seq1  ATGAAGGATATGTCTGAATGTATGCTTTCTATTCAGTAGAAGGTGGTATA  100
       |||  ||| |||||| |||||||| ||||| ||||||||||   |||||
seq2  -TGA--GAT-TGTCTG-ATGTATGC-TTCTA-TCAGTAGAAG--TGTATA  85

seq1  TGGTCCTAGGTCTTTCCGTTACCTGTTACCAGAAATTCATCCCTTATCTT  150
      ||   ||| |||||| |||   |||||| |||||| ||||||| ||||| 
seq2  TG--TCTA-GTCTTT-CGT--ACTGTTA-CAGAAA-TCATCCC-TATCT-  125

seq1  CTTTTTCTTCCTTGAGCAATATTCCAAATTTTTGAAGAAGGAAATAAAGT  200
        ||||||||||||||| ||| |||||| |||||||||||||||||||| 
seq2  -CTTTTCTTCCTTGAGC-ATA-TCCAAA-TTTTGAAGAAGGAAATAAAG-  170

seq1  TTTAACTGAAAAAATATGATAATTTTCTGAAAATATTGAACTAACCATTT  250
      |||||||| ||||||||||||| |||||||||||||||||||||||||||
seq2  TTTAACTG-AAAAATATGATAA-TTTCTGAAAATATTGAACTAACCATTT  218

seq1  CAGGGAGAATACAGAAGAATGCAAAATGTCAATCAACTACGACCCCTATC  300
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGAG-ATACAGAAGAATGCAAAATGTCAATCAACTACGACCCCTATC  267

seq1  CTAATTAGGTTTCCCTTTTATCATGACACAGTCTGGAGTCATTTGGGAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATTAGGTTTCCCTTTTATCATGACACAGTCTGGAGTCATTTGGGAAG  317

seq1  ACCCAGATCAGATCAAGAGATCACCCAGATCGGATTGGACTGTGAGCCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAGATCAGATCAAGAGATCACCCAGATCGGATTGGACTGTGAGCCTG  367

seq1  TATGTGAGGATTGCCTTGATTGTTAACTGATTCAGAAAGACACAGCCTAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTGAGGATTGCCTTGATTGTTAACTGATTCAGAAAGACACAGCCTAC  417

seq1  TGTAAGTAGAACCATTGCTGAGTAGGTGGTCCTTCACTACATAGGAAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAGTAGAACCATTGCTGAGTAGGTGGTCCTTCACTACATAGGAAAAA  467

seq1  ATAAATGAACTTGTACAAACAAGTCAGCAAAAAGTGTTCCTCCTTTCTAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATGAACTTGTACAAACAAGTCAGCAAAAAGTGTTCCTCCTTTCTAC  517

seq1  CCAAACTTCTACCCTGGCTGCATTCAGTCTTGCACTGTGATCTGGATTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAACTTCTACCCTGGCTGCATTCAGTCTTGCACTGTGATCTGGATTTG  567

seq1  CAAGTATTTCCTCATCAAAGTTTCTTTTGGTCAAGGTGGTTTATCACAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTATTTCCTCATCAAAGTTTCTTTTGGTCAAGGTGGTTTATCACAGT  617

seq1  TATGAAAAGCATAAACATTGTATATTTCACGCAATTCCAGAAACTAAAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAAAAGCATAAACATTGTATATTTCACGCAATTCCAGAAACTAAAAA  667

seq1  TAAGCATAATAACCATCATTTCTGAATTTGTATTGGAGTCATATAGCAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCATAATAACCATCATTTCTGAATTTGTATTGGAGTCATATAGCAAT  717

seq1  ATTATGGCTTATTTATATACTACATTTTTTGAAGAGCATGTATTTCAATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATGGCTTATTTATATACTACATTTTTTGAAGAGCATGTATTTCAATT  767

seq1  ACAAGGTTATTAGAATTTGGGTTTAATGTATTTTAAATTACAAACAGTAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGGTTATTAGAATTTGGGTTTAATGTATTTTAAATTACAAACAGTAT  817

seq1  TGTAAATTATAATTCTTCTACCTCATGCATAAATGTTTGAAAATGAATGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAATTATAATTCTTCTACCTCATGCATAAATGTTTGAAAATGAATGA  867

seq1  ATTGCTGTGATATATAAAGCTAAGCCTTTCAAACAATGATATTTTAAATA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCTGTGATATATAAAGCTAAGCCTTTCAAACAATGATATTTTAAATA  917

seq1  ATCCAGATTTGTGAAGCAGGGACACTTTCTTCCATGGAAAGAGAATTTAG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAGATTTGTGAAGCAGGGACACTTTCTTCCATGGAAAGAGAATTTAG  967

seq1  CTATTCAGTTCCACATATAAAAGCTTCTCATAGTATGGATGAGAAAAATC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTCAGTTCCACATATAAAAGCTTCTCATAGTATGGATGAGAAAAATC  1017

seq1  TAGAGCAAACCATTAGCATTATAATGCACTACAATCTGAGAATTAGAGAA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGCAAACCATTAGCATTATAATGCACTACAATCTGAGAATTAGAGAA  1067

seq1  GATAAAGAATTC  1112
      ||||||||||||
seq2  GATAAAGAATTC  1079