BAC Information

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BAC

Clone NameB6Ng01-063F14
Chromosome1 (Build37)
Map Location 188,734,542 - 188,884,847
singlet/doubletdoublet
Overlap geneLOC666832, LOC100042375, D1Pas1, Spata17
Upstream geneLyplal1, Tgfb2, Rrp15
Downstream geneGpatch2, Esrrg, 9330162B11Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-063F14.bB6Ng01-063F14.g
ACCDH883473DH883474
length985899
definitionDH883473|Mus musculus domesticus DNA, BAC clone: B6Ng01-063F14, 5' end.DH883474|Mus musculus domesticus DNA, BAC clone: B6Ng01-063F14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(188,734,542 - 188,735,526)(188,883,951 - 188,884,847)
sequence
gaattccccatgcctcatcatctctcctttcaggattaggaacaatcaca
tgccggtctgttgacacatctctacacattgtgactttgtgacttcggcg
gctggcagtctggacgtgataactagcaaatgaatcctgttatgtgtact
tgttttctctgcttctcattatttccttttcagagcgggtgtggtctaat
ttaaaatcttagctccccagcccatcagcacctaaaccctcactcccagg
agtcagttcttctaactcactttatattgtaggatcacaccatgcatctt
tgttctcttttaaattacatatctacctatctatctatctatctaatcta
tcatctatctgtcacctatctattgtctacctaccatcatctatctacct
atcatctattatctacctacctaccatctattatctaactatctatctat
ctatctatctatctatctatctatccatctatctatctgcctacctacct
agttatcatcagcacctatctatctagtatttatttcatctaaaatttca
gactttcttgttaagtaaccttttattatattatttattgtgtataagtg
tgtgtgccccatcatagcccaggtgtgaaggaggggtcagttctctccct
ccagcatgtgaaccccaggggatcaaactcaagttatcaggtttgatagc
aagcacctttacccactgagccattagatgggcccttaggtaacattatc
ttataacaaactcaatttgaaacagctgttctgttgctgtggttcctgta
ggaattgggctcagtcacctttactcttcagcaatctgaatttttaaata
agtaccacccagacaccaaaaccgctgatctccatgggctctaaccctcc
tggaaaaattttctcagttttatggcatattgatttacgaatccataata
tagagtttaatattgatgctgcctctagctatttt
gaattccagtctgaactagggtaatcaaaccaatgaacttgagagaaatc
tttcctatgggaacccagggctggctgtgccccaggtgctctgagtttga
agtcagagcgacatatttaaggaattgtttttgtaaagttgaacttaaaa
gccaggggcaaccagtgtctcagtagtaaagagcatttgctgctggtgca
gagaacccaggtccagtcccagctcacaactgcctggaactccaggtctg
tgggttcggatccctcttctggcctctacaggcacctgcacagatgtagt
gtcctacagatatgcaggtacaaatgcatacagtaaaaaattagacacag
ttacaagattaacaactagtaatgctagcgtagaaccattataacaacac
ataagaataaagtttatttaaaatgtattagatgtctctgtaatctttca
ttcattttcagactatgggtacctgtagatgacaaggtgctgagcaactc
aaaataagggggtgctatcatatgatcttacccttgcctgctgggcatct
gggaacctcctgctctgtcctctagaactgctgcccctccgaaactaggg
cagaggaaggtgggttgtttctgaggagagaacaaagagggagctaggga
acttggggtctgtgttcctcacatacagtttccagaaaaccctgttcctt
actctggcatccaacccatctgaaggtgttagtggctcaagtgtctgggt
tgtagagaggaagaataagaaggagatcttagctgtacccaactcctcac
tttctgttggtgctaccgccccagctctgctcaccgctagtatagcttga
aggtcccaactcccttctagttcccggcaggtggtattttacccgatgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_188734542_188735526
seq2: B6Ng01-063F14.b_48_1032

seq1  GAATTCCCCATGCCTCATCATCTCTCCTTTCAGGATTAGGAACAATCACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCCATGCCTCATCATCTCTCCTTTCAGGATTAGGAACAATCACA  50

seq1  TGCCGGTCTGTTGACACATCTCTACACATTGTGACTTTGTGACTTCGGCG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCGGTCTGTTGACACATCTCTACACATTGTGACTTTGTGACTTCGGCG  100

seq1  GCTGGCAGTCTGGACGTGATAACTAGCAAATGAATCCTGTTATGTGTACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGCAGTCTGGACGTGATAACTAGCAAATGAATCCTGTTATGTGTACT  150

seq1  TGTTTTCTCTGCTTCTCATTATTTCCTTTTCAGAGCGGGTGTGGTCTAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTCTCTGCTTCTCATTATTTCCTTTTCAGAGCGGGTGTGGTCTAAT  200

seq1  TTAAAATCTTAGCTCCCCAGCCCATCAGCACCTAAACCCTCACTCCCAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAATCTTAGCTCCCCAGCCCATCAGCACCTAAACCCTCACTCCCAGG  250

seq1  AGTCAGTTCTTCTAACTCACTTTATATTGTAGGATCACACCATGCATCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAGTTCTTCTAACTCACTTTATATTGTAGGATCACACCATGCATCTT  300

seq1  TGTTCTCTTTTAAATTACATATCTACCTATCTATCTATCTATCTAATCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTCTTTTAAATTACATATCTACCTATCTATCTATCTATCTAATCTA  350

seq1  TCATCTATCTGTCACCTATCTATTGTCTACCTACCATCATCTATCTACCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCTATCTGTCACCTATCTATTGTCTACCTACCATCATCTATCTACCT  400

seq1  ATCATCTATTATCTACCTACCTACCATCTATTATCTAACTATCTATCTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATCTATTATCTACCTACCTACCATCTATTATCTAACTATCTATCTAT  450

seq1  CTATCTATCTATCTATCTATCTATCCATCTATCTATCTGCCTACCTACCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCTATCTATCTATCTATCTATCCATCTATCTATCTGCCTACCTACCT  500

seq1  AGTTATCATCAGCACCTATCTATCTAGTATTTATTTCATCTAAAATTTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTATCATCAGCACCTATCTATCTAGTATTTATTTCATCTAAAATTTCA  550

seq1  GACTTTCTTGTTAAGTAACCTTTTATTATATTATTTATTGTGTATAAGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTTCTTGTTAAGTAACCTTTTATTATATTATTTATTGTGTATAAGTG  600

seq1  TGTGTGCCCCATCATAGCCCAGGTGTGAAGGAGGGGTCAGTTCTCTCCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGCCCCATCATAGCCCAGGTGTGAAGGAGGGGTCAGTTCTCTCCCT  650

seq1  CCAGCATGTGAACCCCA-GGGATCAAACTCAAGTTATCAGGTTTGATAGC  699
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  CCAGCATGTGAACCCCAGGGGATCAAACTCAAGTTATCAGGTTTGATAGC  700

seq1  AAGCACCTTTACCCACTGAGCCATTAGATGGGCCCTTAGGTAACATTATC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCACCTTTACCCACTGAGCCATTAGATGGGCCCTTAGGTAACATTATC  750

seq1  TTATAACAAACTCAATTTGAAACAGCTGTTCTGTTGCTGTGGTTCCTGTA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAACAAACTCAATTTGAAACAGCTGTTCTGTTGCTGTGGTTCCTGTA  800

seq1  GGAATTGGGCTCAGTCACC-TTACTCTTCAGCAATCTGAATATTTAAATA  848
      ||||||||||||||||||| ||||||||||||||||||||| ||||||||
seq2  GGAATTGGGCTCAGTCACCTTTACTCTTCAGCAATCTGAATTTTTAAATA  850

seq1  AGTACCA-CCAGACACAAAAACAGCTGATCTCAAT-GGCTCTAACCTTCC  896
      ||||||| |||||||| ||||| ||||||||| || |||||||||| |||
seq2  AGTACCACCCAGACACCAAAACCGCTGATCTCCATGGGCTCTAACCCTCC  900

seq1  T-GAAGAATTTTCTCAAGTTTTATTGCAATATTGATTTTAGAATCCATAG  945
      | ||| ||||||||| |||||||| || ||||||||||  ||||||||| 
seq2  TGGAAAAATTTTCTC-AGTTTTATGGC-ATATTGATTTACGAATCCATAA  948

seq1  TATAGAGTTTTATATATTGATGCTGTCTCTTAGCTATTTT  985
      ||||||||||   |||||||||||| ||| ||||||||||
seq2  TATAGAGTTT--AATATTGATGCTGCCTC-TAGCTATTTT  985

seq1: chr1_188883951_188884847
seq2: B6Ng01-063F14.g_69_967 (reverse)

seq1  ACATCTGGTAAATTA-CACCTGCCTGGGAACTAGAAGGTAGTAGGAACC-  48
      ||||| |||||| || |||||||| ||||||||||||| ||| || ||| 
seq2  ACATCGGGTAAAATACCACCTGCC-GGGAACTAGAAGGGAGTTGGGACCT  49

seq1  TCAAGCTATTACTGCTGGTGAGCAGAGCTAGGG-TGTAGCACCAACATGA  97
      |||||||| ||||   ||||||||||||| |||  |||||||||||| ||
seq2  TCAAGCTA-TACTAGCGGTGAGCAGAGCTGGGGCGGTAGCACCAACA-GA  97

seq1  AAGTGAAGAAGTGGGGTACAGCTAAGATCTCC-TCCTATTCTTCCTCTCT  146
      ||||| || ||| ||||||||||||||||||| || ||||||||||||||
seq2  AAGTG-AGGAGTTGGGTACAGCTAAGATCTCCTTCTTATTCTTCCTCTCT  146

seq1  AC-ACCCAGACACTTGAGCCACTAACACCTTCAGATGGGTTGGATGCCAG  195
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACCCAGACACTTGAGCCACTAACACCTTCAGATGGGTTGGATGCCAG  196

seq1  AGTAAGGAACAGGGTTTTCTGGAAACTGTATGTGAGGAACACAGACCCCA  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAGGAACAGGGTTTTCTGGAAACTGTATGTGAGGAACACAGACCCCA  246

seq1  AGTTCCCTAGCTCCCTCTTTGTTCTCTCCTCAGAAACAACCCACCTTCCT  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCCCTAGCTCCCTCTTTGTTCTCTCCTCAGAAACAACCCACCTTCCT  296

seq1  CTGCCCTAGTTTCGGAGGGGCAGCAGTTCTAGAGGACAGAGCAGGAGGTT  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCCTAGTTTCGGAGGGGCAGCAGTTCTAGAGGACAGAGCAGGAGGTT  346

seq1  CCCAGATG-CCAGCAGGCAAGGGTAAGATCATATGATAGCACCCCCTTAT  394
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGATGCCCAGCAGGCAAGGGTAAGATCATATGATAGCACCCCCTTAT  396

seq1  TTTGAGTTGCTCAGCACCTTGTCATCTACAGGTACCCATAGTCTGAAAAT  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGTTGCTCAGCACCTTGTCATCTACAGGTACCCATAGTCTGAAAAT  446

seq1  GAATGAAAGATTACAGAGACATCTAATACATTTTAAATAAACTTTATTCT  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGAAAGATTACAGAGACATCTAATACATTTTAAATAAACTTTATTCT  496

seq1  TATGTGTTGTTATAATGGTTCTACGCTAGCATTACTAGTTGTTAATCTTG  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTGTTGTTATAATGGTTCTACGCTAGCATTACTAGTTGTTAATCTTG  546

seq1  TAACTGTGTCTAATTTTTTACTGTATGCATTTGTACCTGCATATCTGTAG  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTGTGTCTAATTTTTTACTGTATGCATTTGTACCTGCATATCTGTAG  596

seq1  GACACTACATCTGTGCAGGTGCCTGTAGAGGCCAGAAGAGGGATCCGAAC  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACTACATCTGTGCAGGTGCCTGTAGAGGCCAGAAGAGGGATCCGAAC  646

seq1  CCACAGACCTGGAGTTCCAGGCAGTTGTGAGCTGGGACTGGACCTGGGTT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGACCTGGAGTTCCAGGCAGTTGTGAGCTGGGACTGGACCTGGGTT  696

seq1  CTCTGCACCAGCAGCAAATGCTCTTTACTACTGAGACACTGGTTGCCCCT  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCACCAGCAGCAAATGCTCTTTACTACTGAGACACTGGTTGCCCCT  746

seq1  GGCTTTTAAGTTCAACTTTACAAAAACAATTCCTTAAATATGTCGCTCTG  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTTTAAGTTCAACTTTACAAAAACAATTCCTTAAATATGTCGCTCTG  796

seq1  ACTTCAAACTCAGAGCACCTGGGGCACAGCCAGCCCTGGGTTCCCATAGG  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCAAACTCAGAGCACCTGGGGCACAGCCAGCCCTGGGTTCCCATAGG  846

seq1  AAAGATTTCTCTCAAGTTCATTGGTTTGATTACCCTAGTTCAGACTGGAA  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATTTCTCTCAAGTTCATTGGTTTGATTACCCTAGTTCAGACTGGAA  896

seq1  TTC  897
      |||
seq2  TTC  899