BAC Information

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BAC

Clone NameB6Ng01-063L14
Chromosome1 (Build37)
Map Location 180,291,469 - 180,436,616
singlet/doubletdoublet
Overlap geneEfcab2
Upstream geneZfp238, EG631449, LOC100040770, 1700016C15Rik, Adss, EG631584, EG545391, LOC666262, 5830417C01Rik, LOC666284, 4930527J03Rik, LOC666295, B230369F24Rik, LOC669454, 2310005N03Rik, Hnrpu
Downstream geneD230039L06Rik, Kif26b, Smyd3, LOC666354
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-063L14.bB6Ng01-063L14.g
ACCDH883728DH883729
length9111,110
definitionDH883728|Mus musculus domesticus DNA, BAC clone: B6Ng01-063L14, 5' end.DH883729|Mus musculus domesticus DNA, BAC clone: B6Ng01-063L14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(180,435,688 - 180,436,616)(180,291,469 - 180,292,579)
sequence
gaattctcaaactgccagtaatagccagaggcatgagttggtctctgcct
gcacgtctttgcccctgggctgtaggtgcctgaggtatattcaggatttt
cattggttgctaaagccttagatggtcacatctggggttctcactgctct
tcagaggatgctgcaggggtgaacttcaaagaccttcaggcatctgagcc
acctgctcatggatacttattgtgctctctctctctctctctctctctct
ctctctctctctctctctctctccctcgttttcgtttgacaaagtgggtg
cgcgtgagggggtcagcacatgtttcccatgcctgaggctccaggttcat
tcccaaacaattctcataacaaacatgtataagggtcgagtgtggtggcg
cacacctttactcccagcacttgggaggcacaggcagtgaatttctgact
cacggccagccagagcgacatagagaaccttatctcaaaagaccaaaaca
actacaaacaaacaaacaatcagcattacccacatcttcctagagaggct
gccctgcactctcaacctcaggcattttccttcagtgtgtactattaccg
ctttatgtctgatcgcacagtctttcatatgcctgtttgaggcggtatgg
aggagccatggggagaaaggcagacctatcctctcctagacataagtgct
gggtattcttgagtcccagcactgagtctttggttagattaactgtgccc
aacctgtagaccatcatctcctgtgggtaaattctaaactaatatacggg
ttggggttcagctcaagatagcacctcactatcttgcactgggcagtggg
cttcacacttatatggggggaaaacaatccatgtgctgaaattaatttct
ctacgcttact
gaattctgattctcccctaggttgagggactccgtctgagtctgcctgtg
gcagtggtggagggctggagagatggttgagtggttaaaagcaggtgaag
agcattgactgctcttccagaggtcctaagttcaattcccagcaaccaca
tggtggctcacaaccatctgtaatgggatctgatgccctcttctggtata
tctgaagtatactcatataaataaaataaagcttaaaaaaacaaaacaaa
aaagaaaccaggccagtgagatggctcagtggttaagagcactggcttct
cttccagaggtcctgagttcaattcctagcaaccacatggtggctcacaa
ccatctatagtgcgatattatgccctcttcaggcaggcggatgtatatga
ggcagagcactcatacattacataaataaagttaaaaaaaaaaagcaaac
taaacaaacaaaaaatcaggggaagagttcatttggctcacagttccaag
gcacaccccatcatttaggggcagtcaagaccaaagaggatccttgcttg
ttttatttattgatttatgtttttttgagacagggtttctctatgtgtag
ccctggctgtcctggaacttgctatgtagactaggctggcctccaactca
caggtatttacctacctctgcctcccaagtgctggtatcaactgtgtgcc
accatgcccagcttgatccttgttttatttttacactctgccttctctac
tcctatacagtccagggccccaaaccagggaatgcccacagtgggcaaga
taccacttatatttaattaataattatgacaaccttccacaagccaacca
gattgtaatagttcttcaatgtagactttcatctttaagaataattttag
gctggtggcaagctgattatttaaggctaaccatcacagtaggtcacatg
tcccaaagggtctacctcccaactccatcactatggagatcaagtgttca
actcacgagacaacaaaaaacactagaacaaatgtctcttttttgattat
aacgagccagtcaaccacctcgaatgttaatactgaatcagagacgtaca
tgctttgtta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_180435688_180436616
seq2: B6Ng01-063L14.b_49_959 (reverse)

seq1  AGTAAGCGATAGAGAAATTAAAGTACAACCACATGGTTGTTTTTCCCCCC  50
      |||||||| ||||||||||||  |   | ||||||| |  ||||||||||
seq2  AGTAAGCG-TAGAGAAATTAA--TTTCAGCACATGGATTGTTTTCCCCCC  47

seq1  ATGTTAGTGATGGAACCCACTGCCCTGTGCATGCAACGTGAGCGACATAC  100
      || | |||| || | |||||||||| ||||| | |  ||||| |   || 
seq2  ATATAAGTG-TGAAGCCCACTGCCCAGTGCAAG-ATAGTGAG-GTGCTAT  94

seq1  CACTGAGCTGTACCCCAACCCCTCACTTAGTTTAAAATATACCCCACGTG  150
      |  ||||||| |||||||||| |   |||||||| ||| || |||||  |
seq2  C-TTGAGCTGAACCCCAACCCGTATATTAGTTTAGAATTTA-CCCAC-AG  141

seq1  GAGAATGATGGTCACCAGGCTGGGCACAGCTAATCAAACCAAAGCCTCAG  200
      ||| |||||||||  |||| ||||||||| ||||| |||||||| |||||
seq2  GAG-ATGATGGTCTACAGGTTGGGCACAGTTAATCTAACCAAAGACTCAG  190

seq1  TCCTGGTACCCAAGAATTACCAGCACTTAAGTCTATGAGAGGGTCGGTCC  250
      | |||| || |||||||  |||||||||| ||||| |||||| | ||| |
seq2  TGCTGGGACTCAAGAATACCCAGCACTTATGTCTAGGAGAGGATAGGT-C  239

seq1  TGCCCTGTCT-GCCATGGCTCCTCCATACCGCCTTCACACTGGCATCTGA  299
      || ||| |||  ||||||||||||||||||||| ||| || ||||| |||
seq2  TG-CCTTTCTCCCCATGGCTCCTCCATACCGCC-TCAAACAGGCATATGA  287

seq1  AAGACTCTGCGATCAGACATAAAGCGGTAAGAGAAAAAGATGAAGGGAAA  349
      |||||| ||||||||||||||||||||||| || | |   |||||| |||
seq2  AAGACTGTGCGATCAGACATAAAGCGGTAATAGTACACACTGAAGGAAAA  337

seq1  TGCCTGAGGTTGAAACTGCAGGGCAGCCTCTTCTAGGAAGATGTGGGTAA  399
      ||||||||||||| | |||||||||||||| |||||||||||||||||||
seq2  TGCCTGAGGTTGAGAGTGCAGGGCAGCCTC-TCTAGGAAGATGTGGGTAA  386

seq1  TGCTGATTGTTTGTTTGTTTGTTGTTGTTTTGGTCTTTTGAGATAAGGCT  449
      |||||||||||||||||||||| ||||||||||||||||||||||||| |
seq2  TGCTGATTGTTTGTTTGTTTGTAGTTGTTTTGGTCTTTTGAGATAAGG-T  435

seq1  TCTCTATGTCGCTCTGGCTGGCCTTGAACTCAGAAATTCACCTGCCTCTG  499
      ||||||||||||||||||||||| || | ||||||||||| |||||| ||
seq2  TCTCTATGTCGCTCTGGCTGGCCGTG-AGTCAGAAATTCA-CTGCCTGTG  483

seq1  CCTCCCAAGTGCTGGGAGTAAAGGTGTGCGCCACCACACTTGACCCTTAT  549
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  CCTCCCAAGTGCTGGGAGTAAAGGTGTGCGCCACCACACTCGACCCTTAT  533

seq1  ACATGCTTGTTCTGAGAATTGTTAGGGATTGAACCTGGAGCCTCAGGCAT  599
      ||||| ||||| ||||||||||| |||| |||||||||||||||||||||
seq2  ACATGTTTGTTATGAGAATTGTTTGGGAATGAACCTGGAGCCTCAGGCAT  583

seq1  GGGAAACATGTGCTGAACCCCTAAGCTGCACCCTCTTTGTGAATGGTAAA  649
      |||||||||||||||| ||||| |   |||||| |||||| ||  | |||
seq2  GGGAAACATGTGCTGACCCCCTCACGCGCACCCACTTTGTCAAACGAAAA  633

seq1  TGTAGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG  699
       | ||| |||||||||||||||||||||||||||||||||||||||||||
seq2  CG-AGG-GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG  681

seq1  AGAGAGCACAATAAGTATCCATGAGCAGGTGGCTCAGATGCCTGAAGGTC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGCACAATAAGTATCCATGAGCAGGTGGCTCAGATGCCTGAAGGTC  731

seq1  TTTGAAGTTCACCCCTGCAGCATCCTCTGAAGAGCAGTGAGAACCCCAGA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAAGTTCACCCCTGCAGCATCCTCTGAAGAGCAGTGAGAACCCCAGA  781

seq1  TGTGACCATCTAAGGCTTTAGCAACCAATGAAAATCCTGAATATACCTCA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGACCATCTAAGGCTTTAGCAACCAATGAAAATCCTGAATATACCTCA  831

seq1  GGCACCTACAGCCCAGGGGCAAAGACGTGCAGGCAGAGACCAACTCATGC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACCTACAGCCCAGGGGCAAAGACGTGCAGGCAGAGACCAACTCATGC  881

seq1  CTCTGGCTATTACTGGCAGTTTGAGAATTC  929
      ||||||||||||||||||||||||||||||
seq2  CTCTGGCTATTACTGGCAGTTTGAGAATTC  911

seq1: chr1_180291469_180292579
seq2: B6Ng01-063L14.g_64_1173

seq1  GAATTCTGATTCTCCCCTAGGTTGAGGGACTCCGTCTGAGTCTGCCTGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGATTCTCCCCTAGGTTGAGGGACTCCGTCTGAGTCTGCCTGTG  50

seq1  GCAGTGGTGGAGGGCTGGAGAGATGGTTGAGTGGTTAAAAGCAGGTGAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTGGTGGAGGGCTGGAGAGATGGTTGAGTGGTTAAAAGCAGGTGAAG  100

seq1  AGCATTGACTGCTCTTCCAGAGGTCCTAAGTTCAATTCCCAGCAACCACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATTGACTGCTCTTCCAGAGGTCCTAAGTTCAATTCCCAGCAACCACA  150

seq1  TGGTGGCTCACAACCATCTGTAATGGGATCTGATGCCCTCTTCTGGTATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGGCTCACAACCATCTGTAATGGGATCTGATGCCCTCTTCTGGTATA  200

seq1  TCTGAAGTATACTCATATAAATAAAATAAAGCTTAAAAAAACAAAACAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAAGTATACTCATATAAATAAAATAAAGCTTAAAAAAACAAAACAAA  250

seq1  AAAGAAACCAGGCCAGTGAGATGGCTCAGTGGTTAAGAGCACTGGCTTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAACCAGGCCAGTGAGATGGCTCAGTGGTTAAGAGCACTGGCTTCT  300

seq1  CTTCCAGAGGTCCTGAGTTCAATTCCTAGCAACCACATGGTGGCTCACAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCAGAGGTCCTGAGTTCAATTCCTAGCAACCACATGGTGGCTCACAA  350

seq1  CCATCTATAGTGCGATATTATGCCCTCTTCAGGCAGGCGGATGTATATGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCTATAGTGCGATATTATGCCCTCTTCAGGCAGGCGGATGTATATGA  400

seq1  GGCAGAGCACTCATACATTACATAAATAAAGTTAAAAAAAAAAAGCAAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGAGCACTCATACATTACATAAATAAAGTTAAAAAAAAAAAGCAAAC  450

seq1  TAAACAAACAAAAAATCAGGGGAAGAGTTCATTTGGCTCACAGTTCCAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACAAACAAAAAATCAGGGGAAGAGTTCATTTGGCTCACAGTTCCAAG  500

seq1  GCACACCCCATCATTTAGGGGCAGTCAAGACCAAAGAGGATCCTTGCTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACACCCCATCATTTAGGGGCAGTCAAGACCAAAGAGGATCCTTGCTTG  550

seq1  TTTTATTTATTGATTTATGTTTTTTTGAGACAGGGTTTCTCTATGTGTAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATTTATTGATTTATGTTTTTTTGAGACAGGGTTTCTCTATGTGTAG  600

seq1  CCCTGGCTGTCCTGGAACTTGCTATGTAGACTAGGCTGGCCTCCAACTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGGCTGTCCTGGAACTTGCTATGTAGACTAGGCTGGCCTCCAACTCA  650

seq1  CAGGTATTTACCTACCTCTGCCTCCCAAGTGCTGGTATCAACTGTGTGCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTATTTACCTACCTCTGCCTCCCAAGTGCTGGTATCAACTGTGTGCC  700

seq1  ACCATGCCCAGCTTGATCCTTGTTTTATTTTTACACTCTGCCTTCTCTAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATGCCCAGCTTGATCCTTGTTTTATTTTTACACTCTGCCTTCTCTAC  750

seq1  TCCTATACAGTCCAGGGCCCCAAACCAGGGAATGCCCACAGTGGGCAAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTATACAGTCCAGGGCCCCAAACCAGGGAATGCCCACAGTGGGCAAGA  800

seq1  TACCACTTATA-TTAATTAATAATCATGACAACCTTCCACAAGCCAACCA  849
      ||||||||||| |||||||||||| |||||||||||||||||||||||||
seq2  TACCACTTATATTTAATTAATAATTATGACAACCTTCCACAAGCCAACCA  850

seq1  GATGTAAATAGTTCTTCAATGTAGACTTTCATC-TTAAG-ATAATTTTAG  897
      |||   ||||||||||||||||||||||||||| ||||| ||||||||||
seq2  GATTGTAATAGTTCTTCAATGTAGACTTTCATCTTTAAGAATAATTTTAG  900

seq1  GCT-GTGGCAAGCTGA-TATTTAAAGCTAACCATCACAGTAGGTCACATG  945
      ||| |||||||||||| ||||||| |||||||||||||||||||||||||
seq2  GCTGGTGGCAAGCTGATTATTTAAGGCTAACCATCACAGTAGGTCACATG  950

seq1  TCCCAAAGGGTCTACCTCCCAAACTCCATCACTATGGAGGATCAAGTGTT  995
      |||||||||||||||||||| ||||||||||||||||| |||||||||||
seq2  TCCCAAAGGGTCTACCTCCC-AACTCCATCACTATGGA-GATCAAGTGTT  998

seq1  CAAACTCACGAGACAGCAGAAAACACTAGAACAAATGTCTTCTTTTTTGA  1045
      | ||||||||||||| || |||||||||||||||||||| ||||||||||
seq2  C-AACTCACGAGACAACAAAAAACACTAGAACAAATGTC-TCTTTTTTGA  1046

seq1  -TATAACAGAGCCAGTCAACACAACTCGAATGTTATACCTGAATCAGGAG  1094
       |||||| |||||||||||| || |||||||||||   |||||||| |||
seq2  TTATAAC-GAGCCAGTCAAC-CACCTCGAATGTTAATACTGAATCA-GAG  1093

seq1  CTGTACATGCATTGTTA  1111
        |||||||| ||||||
seq2  ACGTACATGCTTTGTTA  1110