BAC Information

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BAC

Clone NameB6Ng01-063M09
Chromosome6 (Build37)1 (Build37)
Map Location 18,835,401 - 18,835,96849,044,635 - 49,045,823
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneSt7, Wnt2, Asz1, LOC386426, LOC636450, LOC100040751, Cftr, Cttnbp2, EG545829, Lsm8, Ankrd7
Downstream geneLOC626180, Eif3s6-ps4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-063M09.bB6Ng01-063M09.g
ACCDH883764DH883765
length9841,171
definitionDH883764|Mus musculus domesticus DNA, BAC clone: B6Ng01-063M09, 5' end.DH883765|Mus musculus domesticus DNA, BAC clone: B6Ng01-063M09, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(18,835,401 - 18,835,968)(49,044,635 - 49,045,823)
sequence
gaattctttgttcagctctgagccccattttttaatggggttatttgatt
ttctggagtccaccttcttgagttctatatatatattggatattagtccc
ctacctgatttgggatgggtaaagatcctttcccaatctgttagtggtct
ttttgtcttattgaaggtgtcttttgccttgcagaatctttgtaatttta
tgaggtcccatttatcgatcctcaatcttacagcacaagcccttgcagtt
ctattcaggaatttttcccctgtacccatatcttagaggcttttccctac
tttctcctctataagtttcagtgttttatgtggagttccttaatccactt
agatttgaccttactacaaggagatagaaatggatcaattcgcattcttc
tacatgataaccgccagttgtgccagcaccatttgttgaaaatgctgtct
tttttccactggatggttttagctcccttatcaaagatcaagtgaccata
ggtgtgtgagttcatctctgggtcttcaattctgttccattggtctactt
gtctgtcactataccagtactatgcagtttttatcacaattgctctgtag
tacagctttaagtcaggcatgctgaacctaccagaagttcttttatcctt
gagaagagtttttgctgtcctagggttttttgttttggtttttttttatt
ccagatgaatctgctgattgccctttctaattctttgaagaattgagttg
gaattttgatggggatggcattgaatctgtagattgcttttggcaagata
gccacttttactatattgatcctgccaatccatgagcatgggagatcttt
ccatcttctgagatcttctttaatttctttcttcagagacttgaagatct
tatcatccacatctttcacttccttagttagagtcatgccaaggtatttt
aaattttagtggactaatgagaggtggtgtttcc
gaattccagacagataggagtaggatcttaaagcccatgcccacagtgac
acatctactccaacaaggccatacctccgaatagtgccactccctgggtc
aaccatataaaaactatcacaagatccaactttctaacatattttgatac
cagcattgcacacttccagaaaatatagatgtagagtttcatgatgacct
ataagttttctttcagttcaagtgttttttgatggcacttatatttggtt
tgcttttctttctgctgtagttattttttcaactatattttatgaggaaa
tatgctttttaaaatcttaaacatagaatattttaatgtacttctccata
gttgctttttattctgtttattatgtaaacatttttattataacattttt
acacaagggtatacttaagtgtgacaatatgaaaaaaagtctagaagcaa
ttctattgtaactgagaattatcatcctacagtgtttcaagaatatttag
ggcaataatttctgcttcagaggggaaacatatgctttcataaaattctc
atgaagaattcaatgacctaattcaagtttggatttcatagagttttttt
cattttatttagtattatttaatctgtgttatccctgcagttacttctgt
ggtttctacctttgtccatacttaatgcatccggccccagcataacccag
cacatttctgtgagacagggatgaaggacgacttgccctttccattataa
gctaacagacaatttaagctgcatttttaaaattttccaactttgctgat
atttttaaaaaaataataactacttatattagttgaatattattatgtat
tattgatcttttgtctattcattattctatcttttactcaataactattt
ttctctagtccagcaaaaacactcaagctcttaaagaacaactttaatta
taatttacacataaaaatgcttgattcaattgaactttgtcagagacata
aggatttaactggaggagacttcatggtcaagtctacattttaggatgga
acatggatgattttattaaattttttggtgtttaggatgactatgaaatc
atacatcaaagggtaggattttacaccctttatgtgcttatttgtgtgta
cttgtaatagcataattcagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_18835401_18835968
seq2: B6Ng01-063M09.b_46_607 (reverse)

seq1  ATAGAGACAGACAAGTAGACCAATGGAATAGAATTGAAGACCCAGAGATG  50
      |||| ||||||||||||||||||||||| |||||||||||||||||||||
seq2  ATAGTGACAGACAAGTAGACCAATGGAACAGAATTGAAGACCCAGAGATG  50

seq1  AACCCACACACCTATGGTCACTTGATCTTCGACAAGGGAGCTAAAACCAT  100
      ||| ||||||||||||||||||||||||| || |||||||||||||||||
seq2  AACTCACACACCTATGGTCACTTGATCTTTGATAAGGGAGCTAAAACCAT  100

seq1  CCAGTGGAAGAAAGACAGCATTTTCAACAATTGGTGCTGGCACAACTGGT  150
      ||||||||| |||||||||||||||||||| |||||||||||||||||| 
seq2  CCAGTGGAAAAAAGACAGCATTTTCAACAAATGGTGCTGGCACAACTGGC  150

seq1  TGTTATCTTGTAGAAGAATGTGAATCGATCCATACTTATCTCCATGTACT  200
       |||||| |||||||||||| |||| |||||||   ||||||| |||| |
seq2  GGTTATCATGTAGAAGAATGCGAATTGATCCATTTCTATCTCCTTGTAGT  200

seq1  AAGGTCAAATCTAAGTGGATCAAGGAACTTCACATAAAACCAGAGACACT  250
      |||||||||||||||||||| |||||||| ||||||||       |||||
seq2  AAGGTCAAATCTAAGTGGATTAAGGAACTCCACATAAA-------ACACT  243

seq1  GAAACTTATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGATATGGGCAGAG  300
      ||||||||||||||||||||| |||||||||||  |||||||||| | ||
seq2  GAAACTTATAGAGGAGAAAGTAGGGAAAAGCCTCTAAGATATGGGTACAG  293

seq1  GGGAAAAGTTCCTGAACAGAACAGCAATGGC-TGTGCTGTGAGGTAGAGA  349
      ||||||| |||||||| ||||| |||| ||| |||||||| || | ||| 
seq2  GGGAAAAATTCCTGAATAGAACTGCAAGGGCTTGTGCTGTAAGATTGAGG  343

seq1  ATCGACAAATGGGACCTAATGAAACTCCAAAGTTTCTGCAAGGCAAAAGA  399
      ||||| ||||||||||| || ||| | ||||| |||||||||||||||||
seq2  ATCGATAAATGGGACCTCATAAAATTACAAAGATTCTGCAAGGCAAAAGA  393

seq1  CACCGTCAATAAGACAAAAAGACCACCAACAGATTGGGAAAGGATCTTTA  449
      |||| ||||||||||||||||||||| |||||||||||||||||||||||
seq2  CACCTTCAATAAGACAAAAAGACCACTAACAGATTGGGAAAGGATCTTTA  443

seq1  CCTATCCTAAATCAGATAGGGGACTAATATCCAACATATATAAAGAACTC  499
      || |||| ||||||| |||||||||||||||||| ||||||| |||||||
seq2  CCCATCCCAAATCAGGTAGGGGACTAATATCCAATATATATATAGAACTC  493

seq1  AAGAAGGTGGACTTCAGAAAATCAAATAACCCCATTAATAAATGGGGCTC  549
      ||||||||||||| |||||||||||||||||||||||| |||||||||||
seq2  AAGAAGGTGGACTCCAGAAAATCAAATAACCCCATTAAAAAATGGGGCTC  543

seq1  AGAACTGAACAAAGAATTC  568
      ||| |||||||||||||||
seq2  AGAGCTGAACAAAGAATTC  562

seq1: chr1_49044635_49045823
seq2: B6Ng01-063M09.g_70_1240 (reverse)

seq1  CCTGAAATTATGCCTATATCAAAGTAACCACACAAATAAGGCAACATAAA  50
      |||| ||||||| |||| |  |||||  ||||||||||||   |||||||
seq2  CCTG-AATTATG-CTAT-TACAAGTA--CACACAAATAAG--CACATAAA  43

seq1  TGTGTGTTATAATCCTTTCCCTTGTATGTATGATCTCATAGTCATCTTAA  100
       | ||| || ||||| | |||||  ||||||||| ||||||||||| |||
seq2  -GGGTG-TAAAATCC-TACCCTTTGATGTATGATTTCATAGTCATCCTAA  90

seq1  ACACCAAAAATATTTAATAAAATCATCATTGTTTCAATCCTAAAAATGTT  150
      |||||||||| ||||||||||||||||  || ||| ||||| |||||| |
seq2  ACACCAAAAA-ATTTAATAAAATCATCCATG-TTCCATCCT-AAAATG-T  136

seq1  AGACTTGACCATGGAAGTCTCCTCAGTTTAAATCC-TATGTCTCTGAC-A  198
      |||||||||||| |||||||||||   |||||||| |||||||||||| |
seq2  AGACTTGACCAT-GAAGTCTCCTCCAGTTAAATCCTTATGTCTCTGACAA  185

seq1  AGTTCAATTGAATCAAGGCATTTTTATGTGTAAATTTATAATTAAAGTTG  248
      |||||||||||||||| ||||||||||||||||| |||||||||||||||
seq2  AGTTCAATTGAATCAA-GCATTTTTATGTGTAAA-TTATAATTAAAGTTG  233

seq1  -TCTTTAAGAAGCTTGAGTG-TTTTGCTGGACTAGAG-AAAATAGTTATT  295
       |||||||| |||||||||| |||||||||||||||| ||||||||||||
seq2  TTCTTTAAG-AGCTTGAGTGTTTTTGCTGGACTAGAGAAAAATAGTTATT  282

seq1  GAAGTAAAAGATAGAATAAATGAATAGGACAAAAGATCAATAATACATAA  345
      | ||||||||||||||| |||||||| |||||||||||||||||||||||
seq2  G-AGTAAAAGATAGAAT-AATGAATA-GACAAAAGATCAATAATACATAA  329

seq1  TAATATTCAACTAATATAAGTAGTTATTATTTTTTTTAAAAATATCAGCA  395
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TAATATTCAACTAATATAAGTAGTTATTA-TTTTTTTAAAAATATCAGCA  378

seq1  AAGTTGGAAAATTTTTAAAAATGCAGCTTAAATTGTCTGTTAGCTTATAA  445
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  AAGTTGGAAAA-TTTTAAAAATGCAGCTTAAATTGTCTGTTAGCTTATAA  427

seq1  TGGAAAGGGCAAGTCGTCCTTCATCCCTGTCTCACAGAAATGTGCTGGGT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAAGGGCAAGTCGTCCTTCATCCCTGTCTCACAGAAATGTGCTGGGT  477

seq1  TATGCTGGGGCCGGATGCATTAAGTATGGACAAAGGTAGAAACCACAGAA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCTGGGGCCGGATGCATTAAGTATGGACAAAGGTAGAAACCACAGAA  527

seq1  GTAACTGCAGGGATAACACAGATTAAATAATACTAAATAAAATGAAAAAA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACTGCAGGGATAACACAGATTAAATAATACTAAATAAAATGAAAAAA  577

seq1  ACTCTATGAAATCCAAACTTGAATTAGGTCATTGAATTCTTCATGAGAAT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTATGAAATCCAAACTTGAATTAGGTCATTGAATTCTTCATGAGAAT  627

seq1  TTTATGAAAGCATATGTTTCCCCTCTGAAGCAGAAATTATTGCCCTAAAT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGAAAGCATATGTTTCCCCTCTGAAGCAGAAATTATTGCCCTAAAT  677

seq1  ATTCTTGAAACACTGTAGGATGATAATTCTCAGTTACAATAGAATTGCTT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTGAAACACTGTAGGATGATAATTCTCAGTTACAATAGAATTGCTT  727

seq1  CTAGACTTTTTTTCATATTGTCACACTTAAGTATACCCTTGTGTAAAAAT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGACTTTTTTTCATATTGTCACACTTAAGTATACCCTTGTGTAAAAAT  777

seq1  GTTATAATAAAAATGTTTACATAATAAACAGAATAAAAAGCAACTATGGA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATAATAAAAATGTTTACATAATAAACAGAATAAAAAGCAACTATGGA  827

seq1  GAAGTACATTAAAATATTCTATGTTTAAGATTTTAAAAAGCATATTTCCT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTACATTAAAATATTCTATGTTTAAGATTTTAAAAAGCATATTTCCT  877

seq1  CATAAAATATAGTTGAAAAAATAACTACAGCAGAAAGAAAAGCAAACCAA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAAATATAGTTGAAAAAATAACTACAGCAGAAAGAAAAGCAAACCAA  927

seq1  ATATAAGTGCCATCAAAAAACACTTGAACTGAAAGAAAACTTATAGGTCA  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAAGTGCCATCAAAAAACACTTGAACTGAAAGAAAACTTATAGGTCA  977

seq1  TCATGAAACTCTACATCTATATTTTCTGGAAGTGTGCAATGCTGGTATCA  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGAAACTCTACATCTATATTTTCTGGAAGTGTGCAATGCTGGTATCA  1027

seq1  AAATATGTTAGAAAGTTGGATCTTGTGATAGTTTTTATATGGTTGACCCA  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATGTTAGAAAGTTGGATCTTGTGATAGTTTTTATATGGTTGACCCA  1077

seq1  GGGAGTGGCACTATTCGGAGGTATGGCCTTGTTGGAGTAGATGTGTCACT  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGTGGCACTATTCGGAGGTATGGCCTTGTTGGAGTAGATGTGTCACT  1127

seq1  GTGGGCATGGGCTTTAAGATCCTACTCCTATCTGTCTGGAATTC  1189
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGCATGGGCTTTAAGATCCTACTCCTATCTGTCTGGAATTC  1171