BAC Information

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BAC

Clone NameB6Ng01-063P03
Chromosome1 (Build37)
Map Location 88,999,302 - 89,159,844
singlet/doubletdoublet
Overlap geneAkp3, Ecel1, 1700027L20Rik, Chrnd, Chrng, Eif4e2
Upstream genePsmd1, Htr2b, Armc9, B3gnt7, EG383538, Ncl, Snord82, Nmur1, 1700019O17Rik, LOC100040414, Ptma, Pde6d, Cops7b, Nppc, 4930429A22Rik, EG620213, LOC208256, Akp5, Alpi
Downstream geneEfhd1, Tnrc15, LOC100040600, LOC100040591, 3110079O15Rik, Ngef, LOC620454, Neu2, Inpp5d, Atg16l1, Sag, Usp40, LOC545344, LOC677561, Ugt1a@, Ugt1a10, Ugt1a9, Ugt1a7c, Ugt1a6a, Ugt1a6b, Ugt1a5, Ugt1a2, Dnajb3, Ugt1a1, LOC100040766, 6430706D22Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-063P03.bB6Ng01-063P03.g
ACCDH883882DH883883
length1,119121
definitionDH883882|Mus musculus domesticus DNA, BAC clone: B6Ng01-063P03, 5' end.DH883883|Mus musculus domesticus DNA, BAC clone: B6Ng01-063P03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(88,999,302 - 89,000,442)(89,159,724 - 89,159,844)
sequence
gaattcatttgcacataccacatacagaaacagagatattcacgtaatta
aaaataaaataaaatactaattaaaaataataataaaaataaataaaaag
cagggtctcagacagatagacagctggcataagactaacagctgcagcac
tctcagtagccaggaaaggggagcaaagggctacggtttggatctagttg
atatgtgtcccacgaaggcccagatgtggctgagctgggaggaggaggag
tttttaacaggtgaagatcgtgaatggtggctcgttactctcagctgctg
ctctctagagagatgaccgaagttctcctgggacccagaaggatgctact
attgtgagttgtaatgaaagaataagaccaatgctccctcccatcactaa
gggcgtcttagcacagcacagcagagctggggcagcaggctgggctggga
cagctctcttgggccagatatggcattggctggatttttcagagtgaccc
tcaggcttatgtaggtaagcccgacccctgttccctcaggcagagagatg
gggccgaagggtgagtggattatccacggggccagtgccagctcttgatc
ttccgaatacttgagctaagtagctcccttcttgttaccacttgcagcta
ttatcttaagtcgatggaagactcatgttttactgagcatttttgatggc
tgaatagccaagccaagcatgctccatatacacagtaggtctcatcttcc
ttaaaaggaaggaaacctatccgaatacattatatacatgtatgaaaatg
tcataatggagcccattgtaatgcataattaacatgtcaacaaaaacaaa
cagaaacagcaccagaaagagagaaagtgcattgtgcacagctatgatcc
agtgctcatgagagtaaggcagaagtcagtgggttgtgggttatgcaccg
ccccctaaaataatgcacctagcacctcagaaccccttgaagccccactg
tgtcagctgtgcatactccatcgtgaacagtgaaaatcattctgccacta
gtaatgatcaaatcagacagtctgttcaactatatcccacatttctagat
agaaaagcagaagccaaat
cagggtaggaagccagcctggggttcacagcaagacccgctgcttcgctg
cttcggaacaaagcaaacaagaaattaacacaagaaattaacgggggaag
ggttagggggaagggggagct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_88999302_89000442
seq2: B6Ng01-063P03.b_48_1166

seq1  GAATTCATTTGCACATACCACATACAGAAACAGAGATATTCACGTAATTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTGCACATACCACATACAGAAACAGAGATATTCACGTAATTA  50

seq1  AAAATAAAATAAAATACTAATTAAAAATAATAATAAAAATAAATAAAAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAAAATAAAATACTAATTAAAAATAATAATAAAAATAAATAAAAAG  100

seq1  CAGGGTCTCAGACAGATAGACAGCTGGCATAAGACTAACAGCTGCAGCAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGTCTCAGACAGATAGACAGCTGGCATAAGACTAACAGCTGCAGCAC  150

seq1  TCTCAGTAGCCAGGAAAGGGGAGCAAAGGGCTACGGTTTGGATCTAGTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGTAGCCAGGAAAGGGGAGCAAAGGGCTACGGTTTGGATCTAGTTG  200

seq1  ATATGTGTCCCACGAAGGCCCAGATGTGGCTGAGCTGGGAGGAGGAGGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTGTCCCACGAAGGCCCAGATGTGGCTGAGCTGGGAGGAGGAGGAG  250

seq1  TTTTTAACAGGTGAAGATCGTGAATGGTGGCTCGTTACTCTCAGCTGCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAACAGGTGAAGATCGTGAATGGTGGCTCGTTACTCTCAGCTGCTG  300

seq1  CTCTCTAGAGAGATGACCGAAGTTCTCCTGGGACCCAGAAGGATGCTACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTAGAGAGATGACCGAAGTTCTCCTGGGACCCAGAAGGATGCTACT  350

seq1  ATTGTGAGTTGTAATGAAAGAATAAGACCAATGCTCCCTCCCATCACTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTGAGTTGTAATGAAAGAATAAGACCAATGCTCCCTCCCATCACTAA  400

seq1  GGGCGTCTTAGCACAGCACAGCAGAGCTGGGGCAGCAGGCTGGGCTGGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCGTCTTAGCACAGCACAGCAGAGCTGGGGCAGCAGGCTGGGCTGGGA  450

seq1  CAGCTCTCTTGGGCCAGATATGGCATTGGCTGGATTTTTCAGAGTGACCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTCTCTTGGGCCAGATATGGCATTGGCTGGATTTTTCAGAGTGACCC  500

seq1  TCAGGCTTATGTAGGTAAGCCCGACCCCTGTTCCCTCAGGCAGAGAGATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGCTTATGTAGGTAAGCCCGACCCCTGTTCCCTCAGGCAGAGAGATG  550

seq1  GGGCCGAAGGGTGAGTGGATTATCCACGGGGCCAGTGCCAGCTCTTGATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCGAAGGGTGAGTGGATTATCCACGGGGCCAGTGCCAGCTCTTGATC  600

seq1  TTCCGAATACTTGAGCTAAGTAGCTCCCTTCTTGTTACCACTTGCAGCTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCGAATACTTGAGCTAAGTAGCTCCCTTCTTGTTACCACTTGCAGCTA  650

seq1  TTATCTTAAGTCGATGGAAGACTCATGTTTTACTGAGCATTTTTGATGGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTTAAGTCGATGGAAGACTCATGTTTTACTGAGCATTTTTGATGGC  700

seq1  TGAATAGCCAAGCCAAGCATGCTCCATATACACAGTAGGTCTCATCTTCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATAGCCAAGCCAAGCATGCTCCATATACACAGTAGGTCTCATCTTCC  750

seq1  TTAAAAGGAAGGAAACCTATCCGAATACATTATATACATGTATGAAAATG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAGGAAGGAAACCTATCCGAATACATTATATACATGTATGAAAATG  800

seq1  TCATAATGGAGCCCATTGTAATGCATAATTAACATGTCAACAAAAACAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAATGGAGCCCATTGTAATGCATAATTAACATGTCAACAAAAACAAA  850

seq1  CAGAAACAGCACCAGAAAGAGAGAAAGGTGCATTGTGCACAGCTATGATC  900
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  CAGAAACAGCACCAGAAAGAGAGAAA-GTGCATTGTGCACAGCTATGATC  899

seq1  CAGTGCTCATGAGAGTAAGGCAGAAGTCAGGTGGGTTGTGGGTTATGCAC  950
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  CAGTGCTCATGAGAGTAAGGCAGAAGTCA-GTGGGTTGTGGGTTATGCAC  948

seq1  CGCCCCCCTTAGAATAATGCACCTAGCAACCTCAGAACCCCCTTGAAAGC  1000
      |||||||  || ||||||||||||||| ||||||||| ||||||| ||||
seq2  CGCCCCC--TAAAATAATGCACCTAGC-ACCTCAGAA-CCCCTTG-AAGC  993

seq1  CCCACCTGTGTCAGGCTGTGCATACTCCCATCGTTGAACAGTGATATACA  1050
      |||| |||||||| |||||||||||| |||||| |||||||||| |  ||
seq2  CCCA-CTGTGTCA-GCTGTGCATACT-CCATCG-TGAACAGTGAAAATCA  1039

seq1  TTTCCTGCCACTAGTAATGATCAAATTCAGACAGTTTCTGTTCAACTATA  1100
      ||  ||||||||||||||||||||| ||||||||  ||||||||||||||
seq2  TT--CTGCCACTAGTAATGATCAAA-TCAGACAG--TCTGTTCAACTATA  1084

seq1  TTCCCAAACATATCTAGATAGGAAAAGCAGAAAAGCCAAAT  1141
      | ||   |||| |||||||| |||||||||  |||||||||
seq2  TCCC---ACATTTCTAGATA-GAAAAGCAG--AAGCCAAAT  1119

seq1: chr1_89159724_89159844
seq2: B6Ng01-063P03.g_72_192 (reverse)

seq1  AGCTCCCCCTTCCCCCTAACCCTTCCCCCGTTAATTTCTTGTGTTAATTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCCCCCTTCCCCCTAACCCTTCCCCCGTTAATTTCTTGTGTTAATTT  50

seq1  CTTGTTTGCTTTGTTCCGAAGCAGCGAAGCAGCGGGTCTTGCTGTGAACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTTTGCTTTGTTCCGAAGCAGCGAAGCAGCGGGTCTTGCTGTGAACC  100

seq1  CCAGGCTGGCTTCCTACCCTG  121
      |||||||||||||||||||||
seq2  CCAGGCTGGCTTCCTACCCTG  121