BAC Information

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BAC

Clone NameB6Ng01-064A04
Chromosome1 (Build37)
Map Location 187,431,439 - 187,603,061
singlet/doubletdoublet
Overlap genenone
Upstream geneEG433387, EG629032, LOC666714, Hlx1, Mosc1, Mosc2, LOC100039079, C130074G19Rik, Mark1, Iars2, Bpnt1, Eprs, 9630028B13Rik, LOC100039138, Slc30a10, 5033404E19Rik
Downstream geneLOC677785, Lyplal1, Tgfb2, Rrp15
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-064A04.bB6Ng01-064A04.g
ACCDH883927DH883928
length1,089776
definitionDH883927|Mus musculus domesticus DNA, BAC clone: B6Ng01-064A04, 5' end.DH883928|Mus musculus domesticus DNA, BAC clone: B6Ng01-064A04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(187,431,439 - 187,432,540)(187,602,285 - 187,603,061)
sequence
gaattccaggcaactagggtaagggtctcagcccacacccacagtgacac
acctattccaaccaggtcacacctatttcaacaaggccatacctccagat
ggtgccactccctggtccaagaatatacaaaccatcacagtagtcctcta
cccaatttggtagataatcctaagaggttcagaggatgagttgtggcttc
cagagggagtctgacaaggtcctgagagggattcctaccaggtgggcaag
gagccaggtagagctctagtgccaggtagaacattggcacggaaatcaag
agccagaccaagtatggaacggggaggaggatgaggccgtgtggccagct
gaaatgttagtgtctgatacgaggtgtactgaccaggccacattccaagg
cccccctctttgctgtcattcacgtctacatagtaggggacacccagaag
tcaggccaattgttcctcactgtctgtggggggaatgctctgggactctt
cagtattgctagaatctttggatgctcaagtcccttctatgacatggaat
tgtatttgcatatggcctgtctatcttcagtacttcaaagcatctcttgt
aatattcagtattagaaatgcataaatagttacaacatatgcgttatgta
agagtggcaaaggagaaagtccagtagagacgcaattttcctgttcatat
tttctgcctgctctcttgagtctgggtatgagataccctccacgtgccaa
ctgagatatttaggagccagaaaaggcagagtctccatcatcatctgctc
agagttcggagtagttgggagctgagcactttgactttacaccctgcttc
caaatgtgaaatttccatgcccacagacccattgaagtgctccatcgttc
atgaagttcagcatcttctctgcatagctttcatgatgagctcttgaggg
gagccttagtcaccatacagaatgtgttttcctgacatcatgtttgagtg
gagccaaacgatattttagtatgatcaccccattcctaatgttgccacct
attttctagtccagaagatttcgaagaagcttccttggt
gaattcaaaaggctgtttaaaaagtaaataaaagttgagctgggagaagg
caaagtgtgtgaagagtagggtaaggagagcctttggacagaggctttgt
gtgtgtgtggctagattggaggcttgatgttttcctgccacttgtggtgt
tttccagctggcttgaagaaataaagaatttaggatcaaacattttgtga
gtctctgaattgggggagggggagaataagaggaaacaatagctgctctg
gctttttatgaacgcaatatcttaactgaacttcagaaaaaggaagtcct
tcctctacactgatgggtctgtagatccagagtcaggtgagcccctccaa
agccccagaaacaataggcctcactgttacctccagtagcatcccagaaa
tgacttgggaaaaagaagaactgtcaagccccaacaggtgcggtactgga
tgtcacagggctgtggaaacaacagagagcgggggccagacgtgccttac
aacatgcaggaggggggctcagagcaaggtgggtttgtgctgattactaa
agacaagtggagcatcaccaggttaggtgaattgcagcttagaaggcatg
ggaaagcaacagaaggcgcagaggctggggctgggaagaaggctcagtga
gttggagctccagcctctcattcaaagttgggcctagaggtccatattta
tgatgtcagacctgggatgcagagacatcaaggaggatctctggggctta
ctggccccattcttgccttcctggtc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_187431439_187432540
seq2: B6Ng01-064A04.b_45_1133

seq1  GAATTCCAGGCAACTAGGGTAAGGGTCTTAAGCCCACACCCACAGTGACA  50
      ||||||||||||||||||||||||||| | ||||||||||||||||||||
seq2  GAATTCCAGGCAACTAGGGTAAGGGTC-TCAGCCCACACCCACAGTGACA  49

seq1  CACCTATTCCAACCAGGTCACACCTATTTCAACAAGGCCATACCTCCAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTATTCCAACCAGGTCACACCTATTTCAACAAGGCCATACCTCCAGA  99

seq1  TGGTGCCACTCCCTGGTCCAAGAATATACAAACCATCACAGTAGTCCTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGCCACTCCCTGGTCCAAGAATATACAAACCATCACAGTAGTCCTCT  149

seq1  ACCCAATTTGGTAGATAATCCTAAGAGGTTCAGAGGATGAGTTGTGGCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAATTTGGTAGATAATCCTAAGAGGTTCAGAGGATGAGTTGTGGCTT  199

seq1  CCAGAGGGAGTCTGACAAGGTCCTGAGAGGGATTCCTACCAGGTGGGCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAGGGAGTCTGACAAGGTCCTGAGAGGGATTCCTACCAGGTGGGCAA  249

seq1  GGAGCCAGGTAGAGCTCTAGTGCCAGGTAGAACATTGGCACGGAAATCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCCAGGTAGAGCTCTAGTGCCAGGTAGAACATTGGCACGGAAATCAA  299

seq1  GAGCCAGACCAAGTATGGAACGGGGAGGAGGATGAGGCCGTGTGGCCAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCAGACCAAGTATGGAACGGGGAGGAGGATGAGGCCGTGTGGCCAGC  349

seq1  TGAAATGTTAGTGTCTGATACGAGGTGTACTGACCAGGCCACATTCCAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATGTTAGTGTCTGATACGAGGTGTACTGACCAGGCCACATTCCAAG  399

seq1  GCCCCCCTCTTTGCTGTCATTCACGTCTACATAGTAGGGGACACCCAGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCCCTCTTTGCTGTCATTCACGTCTACATAGTAGGGGACACCCAGAA  449

seq1  GTCAGGCCAATTGTTCCTCACTGTCTGTGGGGGGAATGCTCTGGGACTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGGCCAATTGTTCCTCACTGTCTGTGGGGGGAATGCTCTGGGACTCT  499

seq1  TCAGTATTGCTAGAATCTTTGGATGCTCAAGTCCCTTCTATGACATGGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTATTGCTAGAATCTTTGGATGCTCAAGTCCCTTCTATGACATGGAA  549

seq1  TTGTATTTGCATATGGCCTGTCTATCTTCAGTACTTCAAAGCATCTCTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTATTTGCATATGGCCTGTCTATCTTCAGTACTTCAAAGCATCTCTTG  599

seq1  TAATATTCAGTATTAGAAATGCATAAATAGTTACAACATATGCGTTATGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATTCAGTATTAGAAATGCATAAATAGTTACAACATATGCGTTATGT  649

seq1  AAGAGTGGCAAAGGAGAAAGTCCAGTAGAGACGCAATTTTCCTGTTCATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGTGGCAAAGGAGAAAGTCCAGTAGAGACGCAATTTTCCTGTTCATA  699

seq1  TTTTCTGCCTGCTCTCTTGAGTCTGGGTATGAGATACCCTCCACGTGCCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTGCCTGCTCTCTTGAGTCTGGGTATGAGATACCCTCCACGTGCCA  749

seq1  ACTGAGATATTTAGGAGCCAGAAAAGGCAGAGTCTCCATCATCATCTGCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAGATATTTAGGAGCCAGAAAAGGCAGAGTCTCCATCATCATCTGCT  799

seq1  CAGAGTTCGGAGTAGTTGGGAGCTGAGCACTTTGACTTTACACCCTGCTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGTTCGGAGTAGTTGGGAGCTGAGCACTTTGACTTTACACCCTGCTT  849

seq1  CCAAATGTGAAATTTCCCATGCCCACAGACCCATTGAAGTGCTCCATCGT  900
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  CCAAATGTGAAATTT-CCATGCCCACAGACCCATTGAAGTGCTCCATCGT  898

seq1  TCATGAAGTTCAGCATCTTCTCTGCATAGCTTTCATGATGAGCTCTTTGA  950
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TCATGAAGTTCAGCATCTTCTCTGCATAGCTTTCATGATGAGCTC-TTGA  947

seq1  GGGGAGCCTTAGTCACCATACAGAAGGTTGTTTTCCTGACATTCATGTTT  1000
      ||||||||||||||||||||||||| | ||||||||||||| ||||||||
seq2  GGGGAGCCTTAGTCACCATACAGAATG-TGTTTTCCTGACA-TCATGTTT  995

seq1  GAGTGGAGCCAAAACGATATTTTAGTTAATGATCAACCCCAATTCCTAAT  1050
      |||||||||| |||||||||||||||  |||||||  ||| |||||||||
seq2  GAGTGGAGCC-AAACGATATTTTAGT--ATGATCA--CCCCATTCCTAAT  1040

seq1  GTTGCCAACATATTTTCTAGTCCAGAGAGATTTCAGAGAAGCCTTCCTTG  1100
      |||||| || |||||||||||||||| |||||||  ||||| ||||||||
seq2  GTTGCC-ACCTATTTTCTAGTCCAGA-AGATTTCGAAGAAG-CTTCCTTG  1087

seq1  GT  1102
      ||
seq2  GT  1089

seq1: chr1_187602285_187603061
seq2: B6Ng01-064A04.g_69_844 (reverse)

seq1  GACCAGGAAGGCAAGAATGGGGGCCAGTAAGCCCCAGAGATCCTCCTTGA  50
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  GACCAGGAAGGCAAGAAT-GGGGCCAGTAAGCCCCAGAGATCCTCCTTGA  49

seq1  TGTCTCTGCCTCCCAGGTCTGACATCATAAATATGGACCTCTAGGCCCAA  100
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCTGCATCCCAGGTCTGACATCATAAATATGGACCTCTAGGCCCAA  99

seq1  CTTTGAATGAGAGGCTGGAGCTCCAACTCACTGAGCCTTCTTCCCAGCCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGAATGAGAGGCTGGAGCTCCAACTCACTGAGCCTTCTTCCCAGCCC  149

seq1  CAGCCTCTGCGCCTTCTGTTGCTTTCCCATGCCTTCTAAGCTGCAATTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTCTGCGCCTTCTGTTGCTTTCCCATGCCTTCTAAGCTGCAATTCA  199

seq1  CCTAACCTGGTGATGCTCCACTTGTCTTTAGTAATCAGCACAAACCCACC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAACCTGGTGATGCTCCACTTGTCTTTAGTAATCAGCACAAACCCACC  249

seq1  TTGCTCTGAGCCCCCCTCCTGCATGTTGTAAGGCACGTCTGGCCCCCGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTCTGAGCCCCCCTCCTGCATGTTGTAAGGCACGTCTGGCCCCCGCT  299

seq1  CTCTGTTGTTTCCACAGCCCTGTGACATCCAGTACCGCACCTGTTGGGGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTTGTTTCCACAGCCCTGTGACATCCAGTACCGCACCTGTTGGGGC  349

seq1  TTGACAGTTCTTCTTTTTCCCAAGTCATTTCTGGGATGCTACTGGAGGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACAGTTCTTCTTTTTCCCAAGTCATTTCTGGGATGCTACTGGAGGTA  399

seq1  ACAGTGAGGCCTATTGTTTCTGGGGCTTTGGAGGGGCTCACCTGACTCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTGAGGCCTATTGTTTCTGGGGCTTTGGAGGGGCTCACCTGACTCTG  449

seq1  GATCTACAGACCCATCAGTGTAGAGGAAGGACTTCCTTTTTCTGAAGTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTACAGACCCATCAGTGTAGAGGAAGGACTTCCTTTTTCTGAAGTTC  499

seq1  AGTTAAGATATTGCGTTCATAAAAAGCCAGAGCAGCTATTGTTTCCTCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAAGATATTGCGTTCATAAAAAGCCAGAGCAGCTATTGTTTCCTCTT  549

seq1  ATTCTCCCCCTCCCCCAATTCAGAGACTCACAAAATGTTTGATCCTAAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTCCCCCTCCCCCAATTCAGAGACTCACAAAATGTTTGATCCTAAAT  599

seq1  TCTTTATTTCTTCAAGCCAGCTGGAAAACACCACAAGTGGCAGGAAAACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTATTTCTTCAAGCCAGCTGGAAAACACCACAAGTGGCAGGAAAACA  649

seq1  TCAAGCCTCCAATCTAGCCACACACACACAAAGCCTCTGTCCAAAGGCTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGCCTCCAATCTAGCCACACACACACAAAGCCTCTGTCCAAAGGCTC  699

seq1  TCCTTACCCTACTCTTCACACACTTTGCCTTCTCCCAGCTCAACTTTTAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTACCCTACTCTTCACACACTTTGCCTTCTCCCAGCTCAACTTTTAT  749

seq1  TTACTTTTTAAACAGCCTTTTGAATTC  777
      |||||||||||||||||||||||||||
seq2  TTACTTTTTAAACAGCCTTTTGAATTC  776