BAC Information

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BAC

Clone NameB6Ng01-064B12
Chromosome2 (Build37)1 (Build37)
Map Location 167,261,202 - 167,261,96074,549,465 - 74,549,772
singlet/doubletsingletsinglet
Overlap geneSlc9a8
Upstream genePpia-ps2_2197.1, BC067047, Trp53rk, Arfgef2, LOC670802, Cse1l, Stau1, LOC383774, Ddx27, AI481105, 1500012F01Rik, LOC668950, Kcnb1, Ptgis, LOC668951, B4galt5
Downstream geneSpata2, Zfp313, Snai1, Ube2v1, AI840826, Cebpb, LOC100043728, Ptpn1, 2310033K02Rik, Pard6b, Adnp, Dpm1, Mocs3, LOC100043908, Kcng1, LOC668952
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-064B12.bB6Ng01-064B12.g
ACCDH883985DH883986
length759662
definitionDH883985|Mus musculus domesticus DNA, BAC clone: B6Ng01-064B12, 5' end.DH883986|Mus musculus domesticus DNA, BAC clone: B6Ng01-064B12, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(167,261,202 - 167,261,960)(74,549,465 - 74,549,772)
sequence
gaattcaaggccatcatggtttattgttaatcctgagattcaccagagaa
aaaccagttcagcaaatttgagccaaatttgaaacaaactttaatcaaat
actgaccaggctggactttggtcaggaggaccattccctggaattcctag
ctgagtggcgatgagacacgttttgtaggggtgatttcaggacaagttca
tatggccattacattttcacttgtggtggtgttattttccaagaactgca
attcccaacattccagaaagttacttggtccttgggcaggtgggcaggtt
aacttcaagtcttatactatgtaagtttcagaacatagggttacccagtc
aaaaaaagaaggaaagaagaaataataatattagtaataataataaaaat
ggctggagagatggctctgtggttaagagtactgactgctcttccagagg
tcctgagttcaaatcccagcaaccacatggtggctcacaaccatctgtaa
tgggatctgatgcccttttttggtgtgtctgaagatagcaacaatgttct
tacacatataaaaaataatttttaaaaagcagcacctcaggcagataaaa
ggaatctgttttctgccaggcggtgatggtgcacgcctttaatcccagca
cttgggaggcgggaggcagaggcaggcggatttctgagttcgaggccagc
ctggtctacaagggcttatacagagaaacactgtctcaaataaaaaaaca
aacaaataa
gaattcagtgtcccaggatccaaaccccatcccatgcatgagaacttggg
ggttgagagaaagcccagggtcacacagctagacggaccagaactggaca
tagttcagtcaccttaaatctcactgtccccaaacaaccattaggatgga
taccatagttatcctgcagtgcacccattgcacagatgagtaagctgggg
cttggagagaagcaacttctcagggtgtttgtaatttatacaaatattcg
ctgatcacctactgtatgccaggtaaaaatagacacggagacaaaaccaa
gttagacagcttatgtggactccgcccccagtccatggaacagctgttat
tcctgatgacacagggtgagagagtcaggaaaatcagaagttcaaggctg
gtaactttgtaggactctgtctcaaaataaaaaagtaagaacgggagggg
ggtatagcttagtgataaagtgctcagtctctgagcttgatcagtggtga
tgcatgcatgactctaatcccagcacttgggaggcaggggcaggggcagg
gcaggggcaggggcaggggcaggggcaggggcaggggcaggggcaggggc
agggggcaggggcagaggcaggcgaacatctgaattcaagtccagcctgg
ggcttcagatgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_167261202_167261960
seq2: B6Ng01-064B12.b_46_804

seq1  GAATTCAAGGCCATCATGGTTTATTGTTAATCCTGAGATTCACCAGAGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGGCCATCATGGTTTATTGTTAATCCTGAGATTCACCAGAGAA  50

seq1  AAACCAGTTCAGCAAATTTGAGCCAAATTTGAAACAAACTTTAATCAAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCAGTTCAGCAAATTTGAGCCAAATTTGAAACAAACTTTAATCAAAT  100

seq1  ACTGACCAGGCTGGACTTTGGTCAGGAGGACCATTCCCTGGAATTCCTAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGACCAGGCTGGACTTTGGTCAGGAGGACCATTCCCTGGAATTCCTAG  150

seq1  CTGAGTGGCGATGAGACACGTTTTGTAGGGGTGATTTCAGGACAAGTTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGTGGCGATGAGACACGTTTTGTAGGGGTGATTTCAGGACAAGTTCA  200

seq1  TATGGCCATTACATTTTCACTTGTGGTGGTGTTATTTTCCAAGAACTGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGCCATTACATTTTCACTTGTGGTGGTGTTATTTTCCAAGAACTGCA  250

seq1  ATTCCCAACATTCCAGAAAGTTACTTGGTCCTTGGGCAGGTGGGCAGGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCCAACATTCCAGAAAGTTACTTGGTCCTTGGGCAGGTGGGCAGGTT  300

seq1  AACTTCAAGTCTTATACTATGTAAGTTTCAGAACATAGGGTTACCCAGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTCAAGTCTTATACTATGTAAGTTTCAGAACATAGGGTTACCCAGTC  350

seq1  AAAAAAAGAAGGAAAGAAGAAATAATAATATTAGTAATAATAATAAAAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAGAAGGAAAGAAGAAATAATAATATTAGTAATAATAATAAAAAT  400

seq1  GGCTGGAGAGATGGCTCTGTGGTTAAGAGTACTGACTGCTCTTCCAGAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGGAGAGATGGCTCTGTGGTTAAGAGTACTGACTGCTCTTCCAGAGG  450

seq1  TCCTGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCTGTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCTGTAA  500

seq1  TGGGATCTGATGCCCTTTTTTGGTGTGTCTGAAGATAGCAACAATGTTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGATCTGATGCCCTTTTTTGGTGTGTCTGAAGATAGCAACAATGTTCT  550

seq1  TACACATATAAAAAATAATTTTTAAAAAGCAGCACCTCAGGCAGAT-AAA  599
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TACACATATAAAAAATAATTTTTAAAAAGCAGCACCTCAGGCAGATAAAA  600

seq1  GGAATCTGTTTTCTGCCAGGCGGTGATGGTGCACGCCTTTAATCCCAGCA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATCTGTTTTCTGCCAGGCGGTGATGGTGCACGCCTTTAATCCCAGCA  650

seq1  CTTGGGAGGCGGGAGGCAGAGGCAGGCGGATTTCTGAGTTCGAGGCCAGC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGGAGGCGGGAGGCAGAGGCAGGCGGATTTCTGAGTTCGAGGCCAGC  700

seq1  CTGGTCTACAAAGGGCTATACAGAGAAACACTGTCTCAAAAAAAAAAACA  749
      ||||||||||| ||  |||||||||||||||||||||||| |||||||| 
seq2  CTGGTCTACAAGGGCTTATACAGAGAAACACTGTCTCAAATAAAAAAAC-  749

seq1  AAACAAAAAA  759
      ||||||| ||
seq2  AAACAAATAA  759

seq1: chr1_74549465_74549772
seq2: B6Ng01-064B12.g_111_612

seq1  AACTTGGGGGTTGAGAGTAA----AGGAAAAAAAAAAT----------CA  36
      ||||||||||||||||| ||    |||   | | |  |           |
seq2  AACTTGGGGGTTGAGAGAAAGCCCAGGGTCACACAGCTAGACGGACCAGA  50

seq1  ACAAGGCTTCTCTGAGAAAGCATTACTTAGACTG-----AAA-----ATT  76
      ||  | | |   | ||  | | | | |   ||||     |||     |||
seq2  ACTGGACATAGTTCAGTCACCTTAAATCTCACTGTCCCCAAACAACCATT  100

seq1  A--AGGCATA----AGTTA---------------ATTG-AAGGATGGCAG  104
      |  | | |||    |||||               |||| |  ||||  ||
seq2  AGGATGGATACCATAGTTATCCTGCAGTGCACCCATTGCACAGATG--AG  148

seq1  CA--CTAGTGC-TGGA-ACAAGCCAGATAAACAGAGT-AGTGTA---TAT  146
       |  || | || |||| | ||| ||  |   ||| ||   ||||   |||
seq2  TAAGCTGGGGCTTGGAGAGAAG-CAACTTCTCAGGGTGTTTGTAATTTAT  197

seq1  GCAAA----------------AGCCTAAACCAG--AAACATTG-TATGTC  177
       ||||                |   ||  ||||  ||| || |  | |  
seq2  ACAAATATTCGCTGATCACCTACTGTATGCCAGGTAAAAATAGACACGGA  247

seq1  TACA----TAAATTAG--------TGTGG----------------CTGGA  199
       |||     || ||||        |||||                 ||||
seq2  GACAAAACCAAGTTAGACAGCTTATGTGGACTCCGCCCCCAGTCCATGGA  297

seq1  -----GGTTA------ATTAAA-------AGAAAG---GGAAAGGTCAGA  228
            ||||      || | |       ||| ||   |||||  |||||
seq2  ACAGCTGTTATTCCTGATGACACAGGGTGAGAGAGTCAGGAAA-ATCAGA  346

seq1  AGGTGAAG------------------------------CTAAAGAAGTAG  248
      || | |||                               |||| ||||| 
seq2  AGTTCAAGGCTGGTAACTTTGTAGGACTCTGTCTCAAAATAAAAAAGTAA  396

seq1  GAAAGAGCCGGG--------------------------------------  260
      ||| | |  |||                                      
seq2  GAACGGGAGGGGGGTATAGCTTAGTGATAAAGTGCTCAGTCTCTGAGCTT  446

seq1  ----CGTGGTG--GCA--CATGCCTTTAATCCCAGCACTTGGGAGGCAGA  302
           ||||||  |||  |||| || ||||||||||||||||||||||| 
seq2  GATCAGTGGTGATGCATGCATGACTCTAATCCCAGCACTTGGGAGGCAGG  496

seq1  GGCAGG  308
      ||||||
seq2  GGCAGG  502