BAC Information

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BAC

Clone NameB6Ng01-064C16
Chromosome1 (Build37)
Map Location 95,584,636 - 95,759,736
singlet/doubletdoublet
Overlap geneBok, Thap4, Atg4b, Dtymk, Ing5, D2hgdh, Gal3st2
Upstream geneGpc1, Ankmy1, Dusp28, LOC100040511, Rnpepl1, Capn10, Gpr35, Aqp12, Kif1a, Agxt, 2310007B03Rik, E030010N08Rik, Sned1, Mterfd2, LOC665966, Pask, Ppp1r7, Tmem16g, Hdlbp, Sept2, Farp2, Stk25
Downstream geneLOC100041596, EG666009, EG619597, Neu4, Pdcd1, LOC666012, LOC666025, LOC100040685
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-064C16.bB6Ng01-064C16.g
ACCDH884037DH884038
length1,0991,066
definitionDH884037|Mus musculus domesticus DNA, BAC clone: B6Ng01-064C16, 5' end.DH884038|Mus musculus domesticus DNA, BAC clone: B6Ng01-064C16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(95,758,701 - 95,759,736)(95,584,636 - 95,585,708)
sequence
gaattcacaagaaatcttcctgcttatgcggcctcagtggtgggattaaa
ggcattgtcctgtaaaggcttcctcagagaatagaacatgccatcttgtg
ggaagctccttcagctggcagataaataactcaaaataccttcagaagtc
cctgaaattgagcagattcaatagacaccactacctcacctctagagtaa
gcaataaaagatgagggtctccctggatctttaagactgagaccagaaca
actacctagaagaggtttagatcaactgaggcacctggaaaggacagtct
ccaaactgctgagctgcctggaggttgtacagtgagctccaggtcctcag
ctctgcaagctgacacccatgctctgggatgggctttggtgatgcagtta
actctgaatcgtttctgtttctttaagtaacctctcacccacaagtaagt
gaccccaataaaactcattccttatcaaattggactttagtggtacacta
tctgtactttggttactctagggttcctcatctgggatgagtagatgatt
taagtattgtctccccagagaaaagttgtcatgcttcagacattctgagg
ccaccacacttggcctcagtttttatctctcccaccctgttgggccaaca
cagtggacaccagcaaaatatacctaagcttccttactttaccccctcct
ctgcaaagccagcctccagactgggatacaatacctggccttaagtgaca
gcttaccacagggacacacagaatccatgcccacatcgggcctcccatga
aaaccactcacaaggtcacatagaccccccatggacaactcagtccctga
gagagacttcccttgagctcagtgctctaaagcacaggttttcatcaagc
tttccaccatcagactaggtgctgaagagacaacaggaacctggctagta
tggatgcccttagctagggcagccctgaggttacagagtcttgctttgac
cgtcactaccagaaactctgagctatcatttctttaaatatctacaatac
cctgaaagggaggtagatattcaggcaggccaccttctctctatggctg
gaattcttctaagatcagcgatatcttcctgaccccaagcatggcctcgg
ccacaaacaggaagcagcctagcttgtgtccctgagccatctcctagggt
tagtctccaaaggccccagggtttatccttggcaacaaccgggcaagcga
tgggaatttccatgcaatctctccatcccctggttccccccccccccact
cctgattctactctggttccagatcttaattaattagatagagcacagct
ggcctcagggatgacgtgggcacccttatcgctgggacaggctaggcagc
aacagcgtttccctatttgctttggctggggaagtggctgagccggggac
acccaatcagaggctgtgtggaattcccggcaccatcttttcctgtgcat
gcatgatactgccaagggtactgcagcccagggggcaggcgggactgtgg
aaggcatctccttggcacagctctggctgggctgatatagtaccacataa
gaacacacccatttggcaccaggaacctaggttggcatgtgggcggtagg
taccattgtcccaggccttggctcagtctaagtcagttcacggagccatt
accaagtgacgctaatgtcagggcctaagccggcatcatctcatgaggct
gtagggggtgactccatatatgtggtcttccagccaagcctctctccatg
ttgggctctgcctgtctggtcccttctgctctgcccatccacttgcttat
ctgccttgcccgcccgtctgccttgagtcactacgcaggcaccacccatg
tatcacgtcaggattcctgccccactggcccagcccagcttgccctgggg
gcttggaggttccccagtctcctattctatttgttcatggggcaaggtgg
atagtcaaatgagcaagataaggtgagggtgggattcaacaggtgaagtg
ggggtcagacctatggaagggaagtgcctacttggagtcaagtggggtca
tgtgtggttctggtaaccatagagtcccggtcaggcgctggccacaaggg
ttaaggtgggagagga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_95758701_95759736
seq2: B6Ng01-064C16.b_126_1140 (reverse)

seq1  CAGCCATAGAGAGAAGGTTGGCCTCTGCCCTGAATTATCTACCCTTCCCT  50
      ||||||||||||||||| ||||||    |||||| ||||||||  |||||
seq2  CAGCCATAGAGAGAAGG-TGGCCT---GCCTGAA-TATCTACC--TCCCT  43

seq1  TCTCAGGGGTATTGTTGGAATATTATAAAGAATAGATAGGCTCAGAGGTT  100
      | ||| ||||||||| |  ||||| |||||||  |||| ||||||||  |
seq2  T-TCA-GGGTATTGTAG--ATATT-TAAAGAAATGATA-GCTCAGAG--T  85

seq1  TTCTGGTTAGTGACGGTCAAAGCACAGACCTCTGTAAACTTCAGGGCTGC  150
      |||||| ||||||||||||||||| ||| |||||| ||| ||||||||||
seq2  TTCTGG-TAGTGACGGTCAAAGCA-AGA-CTCTGT-AACCTCAGGGCTGC  131

seq1  CCTTAGCTTAGGGGCATTCCATACTAGCCAGGTTCCTGTTGTCTCTTCCG  200
      || |||| || ||||| ||||||||||||||||||||||||||||||| |
seq2  CC-TAGC-TAAGGGCA-TCCATACTAGCCAGGTTCCTGTTGTCTCTTCAG  178

seq1  CACCTAGTCTGATGGTGGAAAGCTTGATGAAAACCTGTGCTTTAGAGCAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTAGTCTGATGGTGGAAAGCTTGATGAAAACCTGTGCTTTAGAGCAC  228

seq1  TGAGCTCAAGGGAAGTCTCTCTCAGGGACTGAGTTGTCCATGGGGGGTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCTCAAGGGAAGTCTCTCTCAGGGACTGAGTTGTCCATGGGGGGTCT  278

seq1  ATGTGACCTTGTGAGTGGTTTTCATGGGAGG-CCGATGTGGGCATGGATT  349
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  ATGTGACCTTGTGAGTGGTTTTCATGGGAGGCCCGATGTGGGCATGGATT  328

seq1  CTGTGTGTCCCTGTGGTAAGCTGTCACTTAAGGCCAGGTATTGTATCCCA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTGTCCCTGTGGTAAGCTGTCACTTAAGGCCAGGTATTGTATCCCA  378

seq1  GTCTGGAGGCTGGCTTTGCAGAGGAGGGGGTAAAGTAAGGAAGCTTAGGT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGGAGGCTGGCTTTGCAGAGGAGGGGGTAAAGTAAGGAAGCTTAGGT  428

seq1  ATATTTTGCTGGTGTCCACTGTGTTGGCCCAACAGGGTGGGAGAGATAAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTTGCTGGTGTCCACTGTGTTGGCCCAACAGGGTGGGAGAGATAAA  478

seq1  AACTGAGGCCAAGTGTGGTGGCCTCAGAATGTCTGAAGCATGACAACTTT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGAGGCCAAGTGTGGTGGCCTCAGAATGTCTGAAGCATGACAACTTT  528

seq1  TCTCTGGGGAGACAATACTTAAATCATCTACTCATCCCAGATGAGGAACC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGGGGAGACAATACTTAAATCATCTACTCATCCCAGATGAGGAACC  578

seq1  CTAGAGTAACCAAAGTACAGATAGTGTACCACTAAAGTCCAATTTGATAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAGTAACCAAAGTACAGATAGTGTACCACTAAAGTCCAATTTGATAA  628

seq1  GGAATGAGTTTTATTGGGGTCACTTACTTGTGGGTGAGAGGTTACTTAAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATGAGTTTTATTGGGGTCACTTACTTGTGGGTGAGAGGTTACTTAAA  678

seq1  GAAACAGAAACGATTCAGAGTTAACTGCATCACCAAAGCCCATCCCAGAG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACAGAAACGATTCAGAGTTAACTGCATCACCAAAGCCCATCCCAGAG  728

seq1  CATGGGTGTCAGCTTGCAGAGCTGAGGACCTGGAGCTCACTGTACAACCT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGGTGTCAGCTTGCAGAGCTGAGGACCTGGAGCTCACTGTACAACCT  778

seq1  CCAGGCAGCTCAGCAGTTTGGAGACTGTCCTTTCCAGGTGCCTCAGTTGA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGCAGCTCAGCAGTTTGGAGACTGTCCTTTCCAGGTGCCTCAGTTGA  828

seq1  TCTAAACCTCTTCTAGGTAGTTGTTCTGGTCTCAGTCTTAAAGATCCAGG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAACCTCTTCTAGGTAGTTGTTCTGGTCTCAGTCTTAAAGATCCAGG  878

seq1  GAGACCCTCATCTTTTATTGCTTACTCTAGAGGTGAGGTAGTGGTGTCTA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACCCTCATCTTTTATTGCTTACTCTAGAGGTGAGGTAGTGGTGTCTA  928

seq1  TTGAATCTGCTCAATTTCAGGGACTTCTGAAGGTATTTTGAGTTATTTAT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAATCTGCTCAATTTCAGGGACTTCTGAAGGTATTTTGAGTTATTTAT  978

seq1  CTGCCAGCTGAAGGAGCTTCCCACAAGATGGCATGTT  1036
      |||||||||||||||||||||||||||||||||||||
seq2  CTGCCAGCTGAAGGAGCTTCCCACAAGATGGCATGTT  1015

seq1: chr1_95584636_95585708
seq2: B6Ng01-064C16.g_69_1134

seq1  GAATTCTTCTAAGATCAGCGATATCTTCCTGACCCCAAGCATGGCCTCGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCTAAGATCAGCGATATCTTCCTGACCCCAAGCATGGCCTCGG  50

seq1  CCACAAACAGGAAGCAGCCTAGCTTGTGTCCCTGAGCCATCTCCTAGGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAAACAGGAAGCAGCCTAGCTTGTGTCCCTGAGCCATCTCCTAGGGT  100

seq1  TAGTCTCCAAAGGCCCCAGGGTTTATCCTTGGCAACAACCGGGCAAGCGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCTCCAAAGGCCCCAGGGTTTATCCTTGGCAACAACCGGGCAAGCGA  150

seq1  TGGGAATTTCCATGCAATCTCTCCATCCCCTGGTTCCCCCCCCCCCCACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAATTTCCATGCAATCTCTCCATCCCCTGGTTCCCCCCCCCCCCACT  200

seq1  CCTGATTCTACTCTGGTTCCAGATCTTAATTAATTAGATAGAGCACAGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGATTCTACTCTGGTTCCAGATCTTAATTAATTAGATAGAGCACAGCT  250

seq1  GGCCTCAGGGATGACGTGGGCACCCTTATCGCTGGGACAGGCTAGGCAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTCAGGGATGACGTGGGCACCCTTATCGCTGGGACAGGCTAGGCAGC  300

seq1  AACAGCGTTTCCCTATTTGCTTTGGCTGGGGAAGTGGCTGAGCCGGGGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGCGTTTCCCTATTTGCTTTGGCTGGGGAAGTGGCTGAGCCGGGGAC  350

seq1  ACCCAATCAGAGGCTGTGTGGAATTCCCGGCACCATCTTTTCCTGTGCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAATCAGAGGCTGTGTGGAATTCCCGGCACCATCTTTTCCTGTGCAT  400

seq1  GCATGATACTGCCAAGGGTACTGCAGCCCAGGGGGCAGGCGGGACTGTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGATACTGCCAAGGGTACTGCAGCCCAGGGGGCAGGCGGGACTGTGG  450

seq1  AAGGCATCTCCTTGGCACAGCTCTGGCTGGGCTGATATAGTACCACATAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCATCTCCTTGGCACAGCTCTGGCTGGGCTGATATAGTACCACATAA  500

seq1  GAACACACCCATTTGGCACCAGGAACCTAGGTTGGCATGTGGGCGGTAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACACACCCATTTGGCACCAGGAACCTAGGTTGGCATGTGGGCGGTAGG  550

seq1  TACCATTGTCCCAGGCCTTGGCTCAGTCTAAGTCAGTTCACGGAGCCATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCATTGTCCCAGGCCTTGGCTCAGTCTAAGTCAGTTCACGGAGCCATT  600

seq1  ACCAAGTGACGCTAATGTCAGGGCCTAAGCCGGCATCATCTCATGAGGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAGTGACGCTAATGTCAGGGCCTAAGCCGGCATCATCTCATGAGGCT  650

seq1  GTAGGGGGTGACTCCATATATGTGGTCTTCCAGCCAAGCCTCTCTCCATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGGGGTGACTCCATATATGTGGTCTTCCAGCCAAGCCTCTCTCCATG  700

seq1  TTGGGCTCTGCCTGTCTGGTCCCTTCTGCTCTGCCCATCCACTTGCTTAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGCTCTGCCTGTCTGGTCCCTTCTGCTCTGCCCATCCACTTGCTTAT  750

seq1  CTGCC-TGCCCGCCCGTCTGCCTTGAGTCACTACGCAGGCACCACCCATG  799
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTTGCCCGCCCGTCTGCCTTGAGTCACTACGCAGGCACCACCCATG  800

seq1  TATCACGTCAGGATTCCTGCCCCACTGGCCCAG-CCAGCTTGCCCTGGGG  848
      ||||||||||||||||||||||||||||||||| |||||||||||| |||
seq2  TATCACGTCAGGATTCCTGCCCCACTGGCCCAGCCCAGCTTGCCCT-GGG  849

seq1  GGCTTGGAGGTTCCACAGTCTCCCTATTCTATTTGTTCATGGGGCCAAGG  898
      |||||||||||||| |||||| |||||||||||||||||||||| |||||
seq2  GGCTTGGAGGTTCCCCAGTCT-CCTATTCTATTTGTTCATGGGG-CAAGG  897

seq1  TTGGGATAGTCAAATGAAGCAAGATAAGGTGAAGGGGTGGGAATCAAACA  948
      |  ||||||||||||| |||||||||||||||  |||||||| || ||||
seq2  T--GGATAGTCAAATG-AGCAAGATAAGGTGA--GGGTGGGATTC-AACA  941

seq1  GGTGAAGTGGGGGTCAGAGCCTATGGAAGGGAAGGTGCTAGCTTGGAGGT  998
      |||||||||||||||||| |||||||||||||| ||||   |||||| ||
seq2  GGTGAAGTGGGGGTCAGA-CCTATGGAAGGGAA-GTGCCTACTTGGA-GT  988

seq1  CAAGTGGGGTCA--GGTGGATCTGGTATACCAATGAGTCTCGGTCA-GTG  1045
      ||||||||||||   |||| ||||||| ||||  ||||| |||||| | |
seq2  CAAGTGGGGTCATGTGTGGTTCTGGTA-ACCATAGAGTCCCGGTCAGGCG  1037

seq1  CTGGCCACAA-GGCTAAGGTGGGAGAGGA  1073
      |||||||||| || |||||||||||||||
seq2  CTGGCCACAAGGGTTAAGGTGGGAGAGGA  1066