BAC Information

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BAC

Clone NameB6Ng01-064J14
Chromosome1 (Build37)
Map Location 170,268,225 - 170,408,673
singlet/doubletdoublet
Overlap genePbx1
Upstream geneAldh9a1, Mgst3, Lrrc52, Rxrg, Lmx1a, LOC100039879
Downstream geneEG383613
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-064J14.bB6Ng01-064J14.g
ACCDH884339DH884340
length3461,077
definitionDH884339|Mus musculus domesticus DNA, BAC clone: B6Ng01-064J14, 5' end.DH884340|Mus musculus domesticus DNA, BAC clone: B6Ng01-064J14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(170,408,328 - 170,408,673)(170,268,225 - 170,269,311)
sequence
tggggaacattctacagtaagcacttccccttagagctgcgtggagtcaa
aaaaaaaaaacagccattaaaaatatgtatatagtcaggcaatggtggtg
caagcgattaatcccaacactcaggaagcagagacaggaggatctgtggg
agttcgaggccagcctcagctacagagcaagttccaggacagccaaggat
atacagagaaatcctatctcaaaaagcaaccacaaaacaaaaacaaacaa
aaatttatttacccaactattccaactatttttctctgggtatggtgttt
gcatatgtgtatatatagtgggaggatatataaggcgggtatgtgg
gaattcctcacagatgtactaagcatatttcctgtctgaattatgtgtac
cttaaaaagatccttgattcttgtaactactgaagtcggatattccatcg
agatgctgtacttccctgggacattctgcagtttccacgagtctcagcaa
ttggccagttacatagttacataggtacgagaccagtatttttgggacct
gtttcagcattaagttcctctaccaacagaccccaagaataatgcaataa
actaaacagacccatttctggccagttaatcagataaatacgtcttgttt
tgattctcttaaaggagcattttcattcttcacctgtagttggtggttaa
ttaccagtgtatgatcctcaatagtgaaagtattatggtaaataactata
ttgcttcttattccaaattatctgctgactcttaagacaaccgtggactt
gtatatcataagtaaataataaataaataaataaataaataaataaataa
ataaataggtaaattgataaatattttaaaaactacttcaacaaaccctt
atattttattataataataatatacatttattataaaaccaatatgtgca
ttttatgtaagaccatgtggactaacagagcgggcagttacatggcacac
tgcatatagatttacaaacccaaagcccagggccaacaagcaaaagggaa
acagatgaccatcatcaagacagttgaccaatgcaccaagacagcacaca
aacactaggtcaatatccagaagaacctactgatcattatcaggaacatt
catatcttcttgattaatcctatgggatgacaccagagaagctcatctat
gggggtttagagtagagagcagccacaccctctcatcaatgtcttcttca
ttcaacacaggacttctctgctccctgacctaaacagggcaatctcttac
agcttgtacccaaaacagacagttagatggattggctgagaagaaccttg
acagcaaacgtacctttggatacaggttcacattctgttacccatgccga
cgatgctagaattaagtcccatcaccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_170408328_170408673
seq2: B6Ng01-064J14.b_55_400 (reverse)

seq1  CCACATACCCGCCTTATATATCCTCCCACTATATATACACATATGCAAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACATACCCGCCTTATATATCCTCCCACTATATATACACATATGCAAAC  50

seq1  ACCATACCCAGAGAAAAATAGTTGGAATAGTTGGGTAAATAAATTTTTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATACCCAGAGAAAAATAGTTGGAATAGTTGGGTAAATAAATTTTTGT  100

seq1  TTGTTTTTGTTTTGTGGTTGCTTTTTGAGATAGGATTTCTCTGTATATCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTTGTTTTGTGGTTGCTTTTTGAGATAGGATTTCTCTGTATATCC  150

seq1  TTGGCTGTCCTGGAACTTGCTCTGTAGCTGAGGCTGGCCTCGAACTCCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCTGTCCTGGAACTTGCTCTGTAGCTGAGGCTGGCCTCGAACTCCCA  200

seq1  CAGATCCTCCTGTCTCTGCTTCCTGAGTGTTGGGATTAATCGCTTGCACC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATCCTCCTGTCTCTGCTTCCTGAGTGTTGGGATTAATCGCTTGCACC  250

seq1  ACCATTGCCTGACTATATACATATTTTTAATGGCTGTTTTTTTTTTTTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATTGCCTGACTATATACATATTTTTAATGGCTGTTTTTTTTTTTTGA  300

seq1  CTCCACGCAGCTCTAAGGGGAAGTGCTTACTGTAGAATGTTCCCCA  346
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCACGCAGCTCTAAGGGGAAGTGCTTACTGTAGAATGTTCCCCA  346

seq1: chr1_170268225_170269311
seq2: B6Ng01-064J14.g_68_1144

seq1  GAATTCCTCACAGATGTACTAAGCATATTTCCTGTCTGAATTATGTGTAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCACAGATGTACTAAGCATATTTCCTGTCTGAATTATGTGTAC  50

seq1  CTTAAAAAGATCCTTGATTCTTGTAACTACTGAAGTCGGATATTCCATCG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAAAAGATCCTTGATTCTTGTAACTACTGAAGTCGGATATTCCATCG  100

seq1  AGATGCTGTACTTCCCTGGGACATTCTGCAGTTTCCACGAGTCTCAGCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGCTGTACTTCCCTGGGACATTCTGCAGTTTCCACGAGTCTCAGCAA  150

seq1  TTGGCCAGTTACATAGTTACATAGGTACGAGACCAGTATTTTTGGGACCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCCAGTTACATAGTTACATAGGTACGAGACCAGTATTTTTGGGACCT  200

seq1  GTTTCAGCATTAAGTTCCTCTACCAACAGACCCCAAGAATAATGCAATAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCAGCATTAAGTTCCTCTACCAACAGACCCCAAGAATAATGCAATAA  250

seq1  ACTAAACAGACCCATTTCTGGCCAGTTAATCAGATAAATACGTCTTGTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAACAGACCCATTTCTGGCCAGTTAATCAGATAAATACGTCTTGTTT  300

seq1  TGATTCTCTTAAAGGAGCATTTTCATTCTTCACCTGTAGTTGGTGGTTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTCTCTTAAAGGAGCATTTTCATTCTTCACCTGTAGTTGGTGGTTAA  350

seq1  TTACCAGTGTATGATCCTCAATAGTGAAAGTATTATGGTAAATAACTATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCAGTGTATGATCCTCAATAGTGAAAGTATTATGGTAAATAACTATA  400

seq1  TTGCTTCTTATTCCAAATTATCTGCTGACTCTTAAGACAACCGTGGACTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTCTTATTCCAAATTATCTGCTGACTCTTAAGACAACCGTGGACTT  450

seq1  GTATATCATAAGTAAATAATAAATAAATAAATAAATAAATAAATAAATAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATATCATAAGTAAATAATAAATAAATAAATAAATAAATAAATAAATAA  500

seq1  ATAAATAGGTAAATTGATAAATATTTTAAAAACTACTTCAACAAACCCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATAGGTAAATTGATAAATATTTTAAAAACTACTTCAACAAACCCTT  550

seq1  ATATTTTATTATAATAATAATATACATTTATTATAAAACCAATATGTGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTTATTATAATAATAATATACATTTATTATAAAACCAATATGTGCA  600

seq1  TTTTATGTAAGACCATGTGGACTAACAGAGCGGGCAGTTACATGGCACAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATGTAAGACCATGTGGACTAACAGAGCGGGCAGTTACATGGCACAC  650

seq1  TGCATATAGATTTACAAACCCAAAGCCCAGGGCCAACAAGCAAAAGGGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATATAGATTTACAAACCCAAAGCCCAGGGCCAACAAGCAAAAGGGAA  700

seq1  ACAGATGACCATCATCAAGACAGTTGACCAATGCACCAAGACAGCACACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGATGACCATCATCAAGACAGTTGACCAATGCACCAAGACAGCACACA  750

seq1  AACACTAGGTCAATATCCAGAAGAACCTACTGATCATTATCAGGAACATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACTAGGTCAATATCCAGAAGAACCTACTGATCATTATCAGGAACATT  800

seq1  CATATCTTCTTGATTAATCCTATGGGATGACACCAGAGAAGCTCATCTAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATCTTCTTGATTAATCCTATGGGATGACACCAGAGAAGCTCATCTAT  850

seq1  GGGGGATTAAGAGTAGAGAGCAGCCACACCCTCTCATCAATGTC-TCTTC  899
      ||||| || ||||||||||||||||||||||||||||||||||| |||||
seq2  GGGGG-TTTAGAGTAGAGAGCAGCCACACCCTCTCATCAATGTCTTCTTC  899

seq1  ATTCAACACAGGACTTCTCTGCTCCCTGACCTAAACAGGCCAATCTCTTA  949
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  ATTCAACACAGGACTTCTCTGCTCCCTGACCTAAACAGGGCAATCTCTTA  949

seq1  CAGCATGTACCCCAAAACAGACAGGTAAGGATTGGATTGGCAGAGAAGAC  999
      |||| |||| |||||||||||||| ||  || ||||||||| ||||||| 
seq2  CAGCTTGTA-CCCAAAACAGACAGTTA--GA-TGGATTGGCTGAGAAGA-  994

seq1  ACCTTGAACCAGCAAACGATACCTTTGGATACAGGTTCACA-TCTGTAAC  1048
      |||||||  ||||||||| |||||||||||||||||||||| ||||| ||
seq2  ACCTTGA--CAGCAAACG-TACCTTTGGATACAGGTTCACATTCTGTTAC  1041

seq1  CCATGCAGACGATGCTAAGGACTATAGTCCCCATCACCC  1087
      |||||| ||||||||||  || |  ||| ||||||||||
seq2  CCATGCCGACGATGCTA--GAATTAAGT-CCCATCACCC  1077