BAC Information

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BAC

Clone NameB6Ng01-064K03
Chromosome1 (Build37)
Map Location 15,391,663 - 15,466,049
singlet/doubletdoublet
Overlap geneKcnb2
Upstream geneLOC665391, Msc, Smt3h2-ps4, EG665407, Trpa1, EG269105, LOC100039949, LOC100039959
Downstream genePpia-ps1_109.1, Terf1, Gm106, LOC665434, 4930444P10Rik, Rpl7, Rdh10, EG665282, Stau2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-064K03.bB6Ng01-064K03.g
ACCDH884359DH884360
length1,1401,120
definitionDH884359|Mus musculus domesticus DNA, BAC clone: B6Ng01-064K03, 5' end.DH884360|Mus musculus domesticus DNA, BAC clone: B6Ng01-064K03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(15,464,895 - 15,466,049)(15,391,663 - 15,392,799)
sequence
gaattctaattgtgtagatgacccatgcacactcagagccagagaatggc
taggcacaaagcccaagctattgtgtgtgttctttatccagtccactgtg
attcccaggatgcgtatgtgttttggtttttgttaactgagaaggacact
gtggtctgtatgcacagcctgttgacatttgtctagcaccgacattttac
ttgttacatttatagcactaaaaactttatcttaaattccccttgcatct
tttggagaatgatgtcttctaagagacagtttgttgtcatgtttcttttt
gctcaatactttgccatcttgtctgtttgctctattctttgttgccctgt
ctgcctgaaacattcctcctgactcttccaggcttgccttagtattacac
attttctacagcttttcttgtgttactatcttccttttgccttacaggta
gatcaatgaattaattattaacataattatgatatcgctcctaacatgaa
gcatgctgtaatggaagtataagagaacactatggggaagtgaatcaggc
tttgactagatgtgctattcctgcaacagtctgatttttcactcttgagc
agtatagtgcttgccagaatatggtgtatagaagtattcattggaatttc
atcaaccaattatttgctcttctctgattgccacttgagggacatttatt
aatctctctgctgagatttatacatcactggtgcagcatgggactaggcc
caggggaaatgttcagaaggcaggagtagctgacacaagaggtggtttct
tcttctgcctgctgtcaagcttacctgaggaccacatcactagaaagaaa
agcactacataacacagcttttgatgcaaatagcccaccatttatgagac
caatgttgaagtttctcccagttaaacactgagtggagatgtcagaacag
agtctcaccaagatgggactaacaggaacagttctggaggagtcctgaaa
tagggaagaactggcctatctccttttgttcgtgctcaccacagtgttaa
ggagtaatccattctgctgggaaactgcatctgctcctgaagttggaatt
gggttccttcctcccaatgagttagagtccctttgcattt
gaattcttggacttttccaatctggaattcaggaatctggggttgggaga
ggggctatctctgggaagcagcctgaagccactagagcctggtctcagga
cagctatgctagcctctgccaaggcaaaagagtgagcacaacatggagtg
gaagctgtcccagcctccaggcccaggcatgggcgctctacacagaagaa
cacactgtctgagttgaaaatggcaaaaaaaagaaaagacaaagaagctg
aaatgttgagtgagctgcagtacagtggcccatcagacatgcacatcgtg
aggatgtatggcctggctttgagtagaacttgtgtttatgttcccaggct
tgagaaagactgtgctttactgcagaggggaaagaaacagatccagcgct
tcaattatacaaacacttttcccccattgagtgcattataaggtttcagg
aaattcactgtgcaatgtgtcattatttttagatttttttttaaactgaa
aatttaaaagtggaataaaatgggagtttttctaattaggtaaggtataa
gataattagttaagaaaaagaggaaggaactactgattcaaaatgatacc
ctgtctagctattatctccagatagattatgttaccatatcaagtaagta
agaatcaatgtataatattatagacactattttatgagaaacaaatttac
taccatatgaagttaacattatcgttcttgtgtttgacactgcaaggttt
ttaaacttttttttcccattctgtactttcttagttgagtagatttgtat
gcagtacaatacatgcctgctgtgttttcctattaaagaccttttgcttg
tctacttagaaggggagatattcattatgcaccatagcttaagaacctat
ccattgctataatccttttactttagagaatgaactaatgtgctcattta
caaacatcctccctgtctgctgcagtcattatctagaattagctctaaaa
tcatacacagacactgtttctcaagtctttcaatagactcatttatacta
caatcaaaacaaactgtctccctggccacaaatctcaggattatctggtc
ccttactcatttgttctgac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_15464895_15466049
seq2: B6Ng01-064K03.b_48_1187 (reverse)

seq1  AAATGCAAAGGGAACTC-AACTCATTTGGGATGAAGGAAAACCAATTCCA  49
      |||||||||||| |||| |||||| |||||| ||||| || |||||||| 
seq2  AAATGCAAAGGG-ACTCTAACTCA-TTGGGAGGAAGG-AACCCAATTCC-  46

seq1  AACTACAGAAGCAGAATGCAGTTTTCCCAAGCAGAAATGGATTACTCCCT  99
      |||| ||| ||||| |||||||||  || ||||| ||||||||||| |||
seq2  AACTTCAGGAGCAG-ATGCAGTTT--CCCAGCAG-AATGGATTACT-CCT  91

seq1  TAACCACTTGTGGCTGAGCAACCAAACAAAAGGAGATAAGCCAGTTCTTT  149
      ||| ||| ||||| ||||||  | |||||||||||||| |||||||| ||
seq2  TAA-CAC-TGTGG-TGAGCA--CGAACAAAAGGAGATAGGCCAGTTC-TT  135

seq1  CCCTATTTCAGGACTCCTCCAGAACTGTTCCTGTTAGTCCCATTCTTGGT  199
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  CCCTATTTCAGGACTCCTCCAGAACTGTTCCTGTTAGTCCCA-TCTTGGT  184

seq1  GAGACTCTGTTCTGACATCTCCACTCAGTGTTTAACTGGGAGAAACTTCA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACTCTGTTCTGACATCTCCACTCAGTGTTTAACTGGGAGAAACTTCA  234

seq1  ACATTGGTCTCATAAATGGTGGGCTATTTGCATCAAAAGCTGTGTTATGT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTGGTCTCATAAATGGTGGGCTATTTGCATCAAAAGCTGTGTTATGT  284

seq1  AGTGCTTTTCTTTCTAGTGATGTGGTCCTCAGGTAAGCTTGACAGCAGGC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCTTTTCTTTCTAGTGATGTGGTCCTCAGGTAAGCTTGACAGCAGGC  334

seq1  AGAAGAAGAAACCACCTCTTGTGTCAGCTACTCCTGCCTTCTGAACATTT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAAGAAACCACCTCTTGTGTCAGCTACTCCTGCCTTCTGAACATTT  384

seq1  CCCCTGGGCCTAGTCCCATGCTGCACCAGTGATGTATAAATCTCAGCAGA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTGGGCCTAGTCCCATGCTGCACCAGTGATGTATAAATCTCAGCAGA  434

seq1  GAGATTAATAAATGTCCCTCAAGTGGCAATCAGAGAAGAGCAAATAATTG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATTAATAAATGTCCCTCAAGTGGCAATCAGAGAAGAGCAAATAATTG  484

seq1  GTTGATGAAATTCCAATGAATACTTCTATACACCATATTCTGGCAAGCAC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGATGAAATTCCAATGAATACTTCTATACACCATATTCTGGCAAGCAC  534

seq1  TATACTGCTCAAGAGTGAAAAATCAGACTGTTGCAGGAATAGCACATCTA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACTGCTCAAGAGTGAAAAATCAGACTGTTGCAGGAATAGCACATCTA  584

seq1  GTCAAAGCCTGATTCACTTCCCCATAGTGTTCTCTTATACTTCCATTACA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAAGCCTGATTCACTTCCCCATAGTGTTCTCTTATACTTCCATTACA  634

seq1  GCATGCTTCATGTTAGGAGCGATATCATAATTATGTTAATAATTAATTCA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGCTTCATGTTAGGAGCGATATCATAATTATGTTAATAATTAATTCA  684

seq1  TTGATCTACCTGTAAGGCAAAAGGAAGATAGTAACACAAGAAAAGCTGTA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATCTACCTGTAAGGCAAAAGGAAGATAGTAACACAAGAAAAGCTGTA  734

seq1  GAAAATGTGTAATACTAAGGCAAGCCTGGAAGAGTCAGGAGGAATGTTTC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATGTGTAATACTAAGGCAAGCCTGGAAGAGTCAGGAGGAATGTTTC  784

seq1  AGGCAGACAGGGCAACAAAGAATAGAGCAAACAGACAAGATGGCAAAGTA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGACAGGGCAACAAAGAATAGAGCAAACAGACAAGATGGCAAAGTA  834

seq1  TTGAGCAAAAAGAAACATGACAACAAACTGTCTCTTAGAAGACATCATTC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGCAAAAAGAAACATGACAACAAACTGTCTCTTAGAAGACATCATTC  884

seq1  TCCAAAAGATGCAAGGGGAATTTAAGATAAAGTTTTTAGTGCTATAAATG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAAAGATGCAAGGGGAATTTAAGATAAAGTTTTTAGTGCTATAAATG  934

seq1  TAACAAGTAAAATGTCGGTGCTAGACAAATGTCAACAGGCTGTGCATACA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAAGTAAAATGTCGGTGCTAGACAAATGTCAACAGGCTGTGCATACA  984

seq1  GACCACAGTGTCCTTCTCAGTTAACAAAAACCAAAACACATACGCATCCT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCACAGTGTCCTTCTCAGTTAACAAAAACCAAAACACATACGCATCCT  1034

seq1  GGGAATCACAGTGGACTGGATAAAGAACACACACAATAGCTTGGGCTTTG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAATCACAGTGGACTGGATAAAGAACACACACAATAGCTTGGGCTTTG  1084

seq1  TGCCTAGCCATTCTCTGGCTCTGAGTGTGCATGGGTCATCTACACAATTA  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTAGCCATTCTCTGGCTCTGAGTGTGCATGGGTCATCTACACAATTA  1134

seq1  GAATTC  1155
      ||||||
seq2  GAATTC  1140

seq1: chr1_15391663_15392799
seq2: B6Ng01-064K03.g_68_1187

seq1  GAATTCTTGGACTTTTCCAATCTGGAATTCAGGAATCTGGGGTTGGGAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGGACTTTTCCAATCTGGAATTCAGGAATCTGGGGTTGGGAGA  50

seq1  GGGGCTATCTCTGGGAAGCAGCCTGAAGCCACTAGAGCCTGGTCTCAGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCTATCTCTGGGAAGCAGCCTGAAGCCACTAGAGCCTGGTCTCAGGA  100

seq1  CAGCTATGCTAGCCTCTGCCAAGGCAAAAGAGTGAGCACAACATGGAGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTATGCTAGCCTCTGCCAAGGCAAAAGAGTGAGCACAACATGGAGTG  150

seq1  GAAGCTGTCCCAGCCTCCAGGCCCAGGCATGGGCGCTCTACACAGAAGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCTGTCCCAGCCTCCAGGCCCAGGCATGGGCGCTCTACACAGAAGAA  200

seq1  CACACTGTCTGAGTTGAAAATGGCAAAAAAAAGAAAAGACAAAGAAGCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACTGTCTGAGTTGAAAATGGCAAAAAAAAGAAAAGACAAAGAAGCTG  250

seq1  AAATGTTGAGTGAGCTGCAGTACAGTGGCCCATCAGACATGCACATCGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTTGAGTGAGCTGCAGTACAGTGGCCCATCAGACATGCACATCGTG  300

seq1  AGGATGTATGGCCTGGCTTTGAGTAGAACTTGTGTTTATGTTCCCAGGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATGTATGGCCTGGCTTTGAGTAGAACTTGTGTTTATGTTCCCAGGCT  350

seq1  TGAGAAAGACTGTGCTTTACTGCAGAGGGGAAAGAAACAGATCCAGCGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAAAGACTGTGCTTTACTGCAGAGGGGAAAGAAACAGATCCAGCGCT  400

seq1  TCAATTATACAAACACTTTTCCCCCATTGAGTGCATTATAAGGTTTCAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATTATACAAACACTTTTCCCCCATTGAGTGCATTATAAGGTTTCAGG  450

seq1  AAATTCACTGTGCAATGTGTCATTATTTTTAGATTTTTTTTTAAACTGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCACTGTGCAATGTGTCATTATTTTTAGATTTTTTTTTAAACTGAA  500

seq1  AATTTAAAAGTGGAATAAAATGGGAGTTTTTCTAATTAGGTAAGGTATAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTAAAAGTGGAATAAAATGGGAGTTTTTCTAATTAGGTAAGGTATAA  550

seq1  GATAATTAGTTAAGAAAAAGAGGAAGGAACTACTGATTCAAAATGATACC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAATTAGTTAAGAAAAAGAGGAAGGAACTACTGATTCAAAATGATACC  600

seq1  CTGTCTAGCTATTATCTCCAGATAGATTATGTTACCATATCAAGTAAGTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTAGCTATTATCTCCAGATAGATTATGTTACCATATCAAGTAAGTA  650

seq1  AGAATCAATGTATAATATTATAGACACTATTTTATGAGAAACAAATTTAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATCAATGTATAATATTATAGACACTATTTTATGAGAAACAAATTTAC  700

seq1  TACCATATGAAGTTAACATTATCGTTCTTGTGTTTGACACTGCAAGGTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCATATGAAGTTAACATTATCGTTCTTGTGTTTGACACTGCAAGGTTT  750

seq1  TTAAACTTTTTTTTCCCATTCTGTACTTTCTTAGTTGAGTAGATTTGTAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAACTTTTTTTTCCCATTCTGTACTTTCTTAGTTGAGTAGATTTGTAT  800

seq1  GCAGTACAATACATGCCTGCTGTGTTTTCCTATTAAAGACCTTTTGCTTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTACAATACATGCCTGCTGTGTTTTCCTATTAAAGACCTTTTGCTTG  850

seq1  TCTACTTAGAAGGGGAGATATTCATTATGCACCATAGCTTAAGAACCTAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TCTACTTAGAAGGGGAGATATTCATTATGCACCATAGCTTAAGAACCTA-  899

seq1  TCCATTGCTATAATTCCTTTTACTTTAGAGAATGAACTAATGTGCTCATT  950
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TCCATTGCTATAA-TCCTTTTACTTTAGAGAATGAACTAATGTGCTCATT  948

seq1  TACAAACATCCTCCCTGTTCTGCTGCAGTCATTTATTCTAGAATTAGCTC  1000
      ||||||||||||||||| |||||||||||||||   ||||||||||||||
seq2  TACAAACATCCTCCCTG-TCTGCTGCAGTCATT--ATCTAGAATTAGCTC  995

seq1  TTAAAATCATACACCAAGACACCTGTTTCTTCAAAGTCTTTCAATAGACT  1050
       |||||||||||||  ||||| ||||||||   |||||||||||||||||
seq2  -TAAAATCATACAC--AGACA-CTGTTTCT--CAAGTCTTTCAATAGACT  1039

seq1  CCATTTATACCTACAATCAAAACCAAACTGTTCTCCCTGGCCACAAATCT  1100
       |||||||| |||||||||||| ||||||| |||||||||||||||||||
seq2  -CATTTATA-CTACAATCAAAA-CAAACTG-TCTCCCTGGCCACAAATCT  1085

seq1  CAGGA-TATCTGGTCCCTTACTTCAATTTTGTTCTGAC  1137
      ||||| ||||||||||||||| |||  |||||||||||
seq2  CAGGATTATCTGGTCCCTTAC-TCA--TTTGTTCTGAC  1120