BAC Information

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BAC

Clone NameB6Ng01-064M03
Chromosome1 (Build37)2 (Build37)
Map Location 55,929,642 - 55,930,15415,898,727 - 15,899,839
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneAnkrd44, Sf3b1, Coq10b, Hspd1, Hspe1, LOC381258, Prei3, EG627998, Rftn2, Mars2, LOC666793, Boll, EG632964, LOC667237, LOC626009
Downstream gene9130227L01Rik, Hsfy2, Satb2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-064M03.bB6Ng01-064M03.g
ACCDH884447DH884448
length1,1671,100
definitionDH884447|Mus musculus domesticus DNA, BAC clone: B6Ng01-064M03, 5' end.DH884448|Mus musculus domesticus DNA, BAC clone: B6Ng01-064M03, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(55,929,642 - 55,930,154)(15,898,727 - 15,899,839)
sequence
gaattctcacaggaggaataccgaatggctcagaagaacctgaataaatg
gttagcatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccatctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccattgttagtg
tgattgcaagcttgtacaaccactctggaaatcagtcaggctgttcctca
gaaaattggacatagtactactggaggattccgtaattcctctcctgggc
atatatccagaaaatgttccaactggtaagaaagacacatgctccaccat
gttcttagcagccttatttataatagccagaagccggacagaacccatat
gtccctcaacagaggaatggatacagaaaatgtggtacatttacacaatg
gagtactactcagctattaaaaaacatgaatttatgaaatttctaggcaa
atggatggacctggagggcatcatcctaagtgaggtaacccaatcacaaa
agaactcacatgatatgtactcactgataagtggatattagcccagaaac
ttagaataaccaagatataagatacaatttgcgaaacacaagaaactcaa
gaagaacgaagaccaaagtgtggacactttgccccttcttagaattggga
acaaaacacccatggaaggagttacagagacaaagtttggagatgagaca
aaaggatggaccatctagagactgccatactgggagatccatcccataat
caacctccaaacgctgacaccattgcttacccaagcaacattttgctgaa
atgaccctgatatagctgtgtcttgtgagactatgccggggcctagcaaa
cacagaagtggatgctcacagtcagctattggatggacacagggccccaa
tggaggagctagagaagtacctaagagctaaagggatctgcaaccctata
ggtagaataacaatatgactagccagtcccggagctcgtgtctctagctg
catatgtatcagaagatgcctgtttggccatcagtgtaagagggcccatt
ggtcatgcaactttatgcctcagtaagggaattccaggccagtatgggat
gggtgggatagggaaat
gaattccattgtgaatttcatttctgattacaaaagaagttcttttcaag
gttagtctttgattctcggtaatgatacagtgattgggaatgaaagggat
gatagattaaattaaagattaaactgagaggatctgtctgacacttgaga
atattagaggcaaggatagtgataaaagcctgtcttaatttatgaattgt
aacattttcctaggtatccacttatataactcatacaacacccttgagat
atgcgaagcctcaaaagggttttcaacaaataacatcaaaaatgtcatct
gttcctttaatcaataaaatatgaattattatttctcaaatcttataact
aggctactattaaaataaaaagactgaaagacttgaatactttgatttgt
atgttgttacacaaaagaaaatgagaggtaatgatggtgtaaatcttcca
taatagtacatcatggaacagcattctaatatattctaatactttatata
ttctaatacatataaatacatactatagcatcaattcttagccctataat
tgcaaatttttaaatgcactttttacatgcctatatactcatttgtttat
tctgaaagcatccagttttcatatattagtaatttcaatgttacactctt
gaataaaatggtgagaagatgaggagcctgaccctgtgggagctaagtag
tctaatacagagttcataaaatttcttataatgacaacctctcatcacac
acacacacacacacggacacacacatacacacggacacacacacttacat
ggcaggtatatattcaattcccaaatctttgcctctttatacatgtattg
atgatttgatttcagtcctttataagatgtataataaatgtcactcacat
gcattctctaattcacgtaataactgaccatgggaatcacatttgttttc
atatatatttaattcatactaccatggtacaattgattaaagaaagttaa
aatacattattaggaattggtaaattcaaaaaaagaaaaaccatttactc
cctctatttaatctttctaagcttggattggttattattatttatttatt

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_55929642_55930154
seq2: B6Ng01-064M03.b_991_1213 (reverse)

seq1  ATTTCCCTATCCCACCCATCTCAGTTTTTGACTTCTTCTGAGATCCAAGA  50
                                                        
seq2  --------------------------------------------------  0

seq1  GAAAGGAAGGCAGAACAAGAGAAGCAACCCAGGGAACGTTTGTATTTGTG  100
                                                        
seq2  --------------------------------------------------  0

seq1  GCAACAGGGAGCTAACAGTGGGATGCTTTTTTTTTTTCTTTTTCTTTCTT  150
                                                        
seq2  --------------------------------------------------  0

seq1  TTTTTTTTTTTAACATAGTTGCTTTAAAATTTTTCATTTCCATTCAGCTT  200
                                                        
seq2  --------------------------------------------------  0

seq1  TTTTTTTAATTAGGTATTTTCTTCATTACATTTCCAATGCTATTCCAAAA  250
                                                        
seq2  --------------------------------------------------  0

seq1  ATCCCCCATACCCTCCCCCCCTACTCCCCTA-CCCACCCACTCCCACTTC  299
                            | | ||||| |||||||| ||||| | |
seq2  ----------------------ATTTCCCTATCCCACCCA-TCCCA-TAC  26

seq1  TTGGCCCTGGCATTCCCCTGTACTGAGGCATATAAAGTTTGCAAGACCAA  349
      |  | ||||| ||||||   |||||||||  |||||| ||||| ||||||
seq2  T--GGCCTGGAATTCCC--TTACTGAGGC--ATAAAG-TTGCATGACCAA  69

seq1  TGGGCCTCTCTTTCCAATGATGGCCGACTAGGCCATCTTCTGCTACATAT  399
      |||||| ||| || || |||||||| |  ||| ||||||||| |||||||
seq2  TGGGCC-CTC-TTACACTGATGGCCAAACAGG-CATCTTCTGATACATAT  116

seq1  GCAGCTAGAGACAGGAGCTCTGGGGGGTACTGGTTAGTTCATATTGTTGT  449
      ||||||||||||| |||||| |||    ||||| ||| |||||||||| |
seq2  GCAGCTAGAGACACGAGCTCCGGG----ACTGGCTAG-TCATATTGTTAT  161

seq1  TCCACCTATAGGGTTGCAGACCCCTTCAGCTCCTTGGGTACTTTTTCTAG  499
      || ||||||||||||||||| ||||| |||| ||| ||||| || |||||
seq2  TCTACCTATAGGGTTGCAGATCCCTTTAGCT-CTTAGGTAC-TTCTCTAG  209

seq1  CTCCTCCATTGGGG  513
      ||||||||||||||
seq2  CTCCTCCATTGGGG  223

seq1: chr2_15898727_15899839
seq2: B6Ng01-064M03.g_69_1168 (reverse)

seq1  AATAAATAAATAATAAATAAACAAATCCAAAGCTTAAGAAAGATTAAAAT  50
      ||||||||||||||||   ||| ||||| |||||| ||||||||| ||||
seq2  AATAAATAAATAATAA--TAACCAATCC-AAGCTT-AGAAAGATT-AAAT  45

seq1  AGAGAGAGTAAATGGTTTTTCTATTTTTGAATTTTAACCAATTCCTTATT  100
      |||| ||||||||||||||||| |||||||||||  ||||||||| || |
seq2  AGAGGGAGTAAATGGTTTTTCTTTTTTTGAATTT--ACCAATTCC-TAAT  92

seq1  AATGTATTTTAACTTTTCTTTAATCAATTGTTACCATGGTAGTATTGAAT  150
      ||||||||||||| |||||||||||||||| ||||||||||||| |||| 
seq2  AATGTATTTTAAC-TTTCTTTAATCAATTG-TACCATGGTAGTA-TGAA-  138

seq1  TTAAATATATATGAAAACAAATGTGATTCCCATGGTCAGTTATTACGTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TTAAATATATATGAAAACAAATGTGATTCCCATGGTCAGTTATTACGTG-  187

seq1  AATTAGAGAATGCATGTGAGTGACATTTATTATACATCTTATAAAGGACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAGAGAATGCATGTGAGTGACATTTATTATACATCTTATAAAGGACT  237

seq1  GAAATCAAATCATCAATACATGTATAAAGAGGCAAAGAATTGGGAATTGA  300
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  GAAATCAAATCATCAATACATGTATAAAGAGGCAAAGATTTGGGAATTGA  287

seq1  ATATATACCTGCCATGTAAGTGTGTGTGTCCGTGTGTATGTGTGTGTCCG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATACCTGCCATGTAAGTGTGTGTGTCCGTGTGTATGTGTGTGTCCG  337

seq1  TGTGTGTGTGTGTGTGTGATGAGAGGTTGTCATTATAAGAAATTTTATGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGTGTGATGAGAGGTTGTCATTATAAGAAATTTTATGA  387

seq1  ACTCTGTATTAGACTACTTAGCTCCCACAGGGTCAGGCTCCTCATCTTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGTATTAGACTACTTAGCTCCCACAGGGTCAGGCTCCTCATCTTCT  437

seq1  CACCATTTTATTCAAGAGTGTAACATTGAAATTACTAATATATGAAAACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCATTTTATTCAAGAGTGTAACATTGAAATTACTAATATATGAAAACT  487

seq1  GGATGCTTTCAGAATAAACAAATGAGTATATAGGCATGTAAAAAGTGCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGCTTTCAGAATAAACAAATGAGTATATAGGCATGTAAAAAGTGCAT  537

seq1  TTAAAAATTTGCAATTATAGGGCTAAGAATTGATGCTATAGTATGTATTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAATTTGCAATTATAGGGCTAAGAATTGATGCTATAGTATGTATTT  587

seq1  ATATGTATTAGAATATATAAAGTATTAGAATATATTAGAATGCTGTTCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTATTAGAATATATAAAGTATTAGAATATATTAGAATGCTGTTCCA  637

seq1  TGATGTACTATTATGGAAGATTTACACCATCATTACCTCTCATTTTCTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGTACTATTATGGAAGATTTACACCATCATTACCTCTCATTTTCTTT  687

seq1  TGTGTAACAACATACAAATCAAAGTATTCAAGTCTTTCAGTCTTTTTATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTAACAACATACAAATCAAAGTATTCAAGTCTTTCAGTCTTTTTATT  737

seq1  TTAATAGTAGCCTAGTTATAAGATTTGAGAAATAATAATTCATATTTTAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATAGTAGCCTAGTTATAAGATTTGAGAAATAATAATTCATATTTTAT  787

seq1  TGATTAAAGGAACAGATGACATTTTTGATGTTATTTGTTGAAAACCCTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTAAAGGAACAGATGACATTTTTGATGTTATTTGTTGAAAACCCTTT  837

seq1  TGAGGCTTCGCATATCTCAAGGGTGTTGTATGAGTTATATAAGTGGATAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGCTTCGCATATCTCAAGGGTGTTGTATGAGTTATATAAGTGGATAC  887

seq1  CTAGGAAAATGTTACAATTCATAAATTAAGACAGGCTTTTATCACTATCC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGAAAATGTTACAATTCATAAATTAAGACAGGCTTTTATCACTATCC  937

seq1  TTGCCTCTAATATTCTCAAGTGTCAGACAGATCCTCTCAGTTTAATCTTT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCTCTAATATTCTCAAGTGTCAGACAGATCCTCTCAGTTTAATCTTT  987

seq1  AATTTAATCTATCATCCCTTTCATTCCCAATCACTGTATCATTACCGAGA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTAATCTATCATCCCTTTCATTCCCAATCACTGTATCATTACCGAGA  1037

seq1  ATCAAAGACTAACCTTGAAAAGAACTTCTTTTGTAATCAGAAATGAAATT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAAGACTAACCTTGAAAAGAACTTCTTTTGTAATCAGAAATGAAATT  1087

seq1  CACAATGGAATTC  1113
      |||||||||||||
seq2  CACAATGGAATTC  1100