BAC Information

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BAC

Clone NameB6Ng01-064P13
Chromosome1 (Build37)
Map Location 15,555,638 - 15,556,751
singlet/doubletsinglet
Overlap geneKcnb2
Upstream geneMsc, Smt3h2-ps4, EG665407, Trpa1, EG269105, LOC100039949, LOC100039959
Downstream genePpia-ps1_109.1, Terf1, Gm106, LOC665434, 4930444P10Rik, Rpl7, Rdh10, EG665282, Stau2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-064P13.bB6Ng01-064P13.g
ACCDH884601DH884602
length1,1661,109
definitionDH884601|Mus musculus domesticus DNA, BAC clone: B6Ng01-064P13, 5' end.DH884602|Mus musculus domesticus DNA, BAC clone: B6Ng01-064P13, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcaactgaggagtaatgaatcgctgagaagcaccttaaaaaatc
aacatccttaatcatcagagaaattcaacacccttaatcatcagggaaat
gcaaatcaaaacaaccctgagattccacctcacaccactcagaatggcta
agatcaaaactcaggtgacagcagatgctggcaaggatgtggtgaaagag
gaacactcctccatttttggtgggattgcaagctggtacaaccactctgg
aaatcagtctggctgttcctcaggaaatgggatatagtactaccggaaga
tccagcaatacctctcctgggcatatacccagaagatgttcccacttgta
ataaggacacatgctctactatgttcatagcagccttatttacaatagcc
agaagctggaaagaacccagatgtccctcaacagaagaatggatacagaa
aatgtggtatgtttaaacaatggagtactatgcagctattaaaaacaatg
aattcatgaatttcttaggcaaatggatggatctggaggatatcatcctg
agtgaggtaatctaatcacaaaagagcacacatgatatgcactcactgat
aagtggatattagcccagaaacttagaatacccaagatacaatttgcaaa
atacctgaaactcaagaagaaggaagaccaaagtgaggatacttcgttcc
ttcttagaatgtggaaaaaataaccatggaaggagttacagagacaaatt
tgagagcagagcctgaaggaaggaccatccatagactgccccacctggag
atccatcccatatacaaccatgaaccccagacactattgcatatgccagc
aagcttttgctgacaggtccctgatatagctgtctcttttgaggatatgc
cagtgctttttcaatacagaagtggagcttatagtcattcatggatgaca
caggccccaatgtagagctagagacgtatctagagctaaaggtctgccac
cctatagagaacacaatatgactatcagtatacccttagcttgtgtctgt
agtggaattgtagcagagtttagctagtagcacaatagaggaagaccctt
gcttggagataatatgccctaatactggaatgccaggccaagaccagggt
gtgtggggttgggacc
gaattcattgacatgttctagaaaatagagtttgttacttctgaagaaac
attaatgaatactcatttaatatattcccctttctagaagctctgtttca
tcaagcctgtgaataaagctggactctcttcctcactaatgttagtctgg
aaacagactgtctaaacagcatctgcgaatcaagagcccctgtgggtaga
ccatgtgatagtactgctgtgtggtatttataattaatactcttccattt
ctagccaatcattctacagcttaggtttctaattatgggaacagagaatg
ggtactcacactgaggtatcattgtttttactgctgtagaaaatgaagat
ctatgagaaggaagggaccttcatgggccccttgctttcaaccagtcttt
ccaggtcagctcttaccttgccccacttgaaggcagtaaatggaagctgg
gtgcaaactctcctttctctagaaatctttccaattaagtgaagctatga
cagaggaatatctctaattccgactcaactctgtggtttaatttcctctc
tgaaagctgtgttgtgtttggctgctgtgctcaccttcagacatagctgc
caaggctacctgcagagcaggtgatggtaaaaagccagagagtacctcag
ccgccaattagaagtggttggctcggtggtgattctgtctggcccagtga
gtgagtgaacagactgctggctggtagctggttcccttctgacttgtagc
tctctcgatcctgggcttgttgctctttgaataaatgccaactgaggctt
tggcataggagtctcaggaagagaaaggtagacttatacccttcatctgc
aaaggcagacaataacagcattttcagcagctctctattccaataattaa
cacttttagacaacttttactttcattaaaagcatttgtctctggattag
ctgctttcttgtcactataacagattacccaatgctagatggcatttaag
aggggagttatgtagccatagtcctgagttctggatgtaaccacaaacat
ccccatgaactcctggtaagaccctctgctgccttcaaattgccaatcac
acctgtaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_15555638_15556751
seq2: B6Ng01-064P13.g_70_1178

seq1  GAATTCATTGACATGTTCTAGAAAATAGAGTTTGTTACTTCTGAAGAAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTGACATGTTCTAGAAAATAGAGTTTGTTACTTCTGAAGAAAC  50

seq1  ATTAATGAATACTCATTTAATATATTCCCCTTTCTAGAAGCTCTGTTTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAATGAATACTCATTTAATATATTCCCCTTTCTAGAAGCTCTGTTTCA  100

seq1  TCAAGCCTGTGAATAAAGCTGGACTCTCTTCCTCACTAATGTTAGTCTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGCCTGTGAATAAAGCTGGACTCTCTTCCTCACTAATGTTAGTCTGG  150

seq1  AAACAGACTGTCTAAACAGCATCTGCGAATCAAGAGCCCCTGTGGGTAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGACTGTCTAAACAGCATCTGCGAATCAAGAGCCCCTGTGGGTAGA  200

seq1  CCATGTGATAGTACTGCTGTGTGGTATTTATAATTAATACTCTTCCATTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGTGATAGTACTGCTGTGTGGTATTTATAATTAATACTCTTCCATTT  250

seq1  CTAGCCAATCATTCTACAGCTTAGGTTTCTAATTATGGGAACAGAGAATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCCAATCATTCTACAGCTTAGGTTTCTAATTATGGGAACAGAGAATG  300

seq1  GGTACTCACACTGAGGTATCATTGTTTTTACTGCTGTAGAAAATGAAGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACTCACACTGAGGTATCATTGTTTTTACTGCTGTAGAAAATGAAGAT  350

seq1  CTATGAGAAGGAAGGGACCTTCATGGGCCCCTTGCTTTCAACCAGTCTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGAGAAGGAAGGGACCTTCATGGGCCCCTTGCTTTCAACCAGTCTTT  400

seq1  CCAGGTCAGCTCTTACCTTGCCCCACTTGAAGGCAGTAAATGGAAGCTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGTCAGCTCTTACCTTGCCCCACTTGAAGGCAGTAAATGGAAGCTGG  450

seq1  GTGCAAACTCTCCTTTCTCTAGAAATCTTTCCAATTAAGTGAAGCTATGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCAAACTCTCCTTTCTCTAGAAATCTTTCCAATTAAGTGAAGCTATGA  500

seq1  CAGAGGAATATCTCTAATTCCGACTCAACTCTGTGGTTTAATTTCCTCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGAATATCTCTAATTCCGACTCAACTCTGTGGTTTAATTTCCTCTC  550

seq1  TGAAAGCTGTGTTGTGTTTGGCTGCTGTGCTCACCTTCAGACATAGCTGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGCTGTGTTGTGTTTGGCTGCTGTGCTCACCTTCAGACATAGCTGC  600

seq1  CAAGGCTACCTGCAGAGCAGGTGATGGTAAAAAGCCAGAGAGTACCTCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGCTACCTGCAGAGCAGGTGATGGTAAAAAGCCAGAGAGTACCTCAG  650

seq1  CCGCCAATTAGAAGTGGTTGGCTCGGTGGTGATTCTGTCTGGCCCAGTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCCAATTAGAAGTGGTTGGCTCGGTGGTGATTCTGTCTGGCCCAGTGA  700

seq1  GTGAGTGAACAGACTGCTGGCTGGTAGCTGGTTCCCTTCTGACTTGTAGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGTGAACAGACTGCTGGCTGGTAGCTGGTTCCCTTCTGACTTGTAGC  750

seq1  TCTCTCGATCCTGGGCTTGTTGCTCTTTGAATAAATGCCAACTGAGGCTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCGATCCTGGGCTTGTTGCTCTTTGAATAAATGCCAACTGAGGCTT  800

seq1  TGGCATAGGAGTCTCAGGAAGAGAAAGGTAGACTTATACACTTCATCTGC  850
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TGGCATAGGAGTCTCAGGAAGAGAAAGGTAGACTTATACCCTTCATCTGC  850

seq1  AAAGGCAGAC-ATAACAGCATTTTCAGCAGCTCTCTATT-CTATAAATAA  898
      |||||||||| |||||||||||||||||||||||||||| | |||| |||
seq2  AAAGGCAGACAATAACAGCATTTTCAGCAGCTCTCTATTCCAATAATTAA  900

seq1  CACTTTTAGGACAACTTTTACTTTCATTAAAAGCATTTGTCTCTGGATTA  948
      |||||||| |||||||||||||||||||||||||||||||||||||||| 
seq2  CACTTTTA-GACAACTTTTACTTTCATTAAAAGCATTTGTCTCTGGATT-  948

seq1  AGCTGCTTTC-TGTCACTATAACAGAATACCCCAATGCTAGATGGCATTT  997
      |||||||||| ||||||||||||||| || ||||||||||||||||||||
seq2  AGCTGCTTTCTTGTCACTATAACAGATTA-CCCAATGCTAGATGGCATTT  997

seq1  AAAGAGGGGAGGTTTATGTAGCCCATAGTTCTGGAAGTTCTGGAGTGAAA  1047
       ||||||||||  |||||||| ||||||| |||  |||||||||   || 
seq2  -AAGAGGGGAG--TTATGTAG-CCATAGTCCTG--AGTTCTGGATGTAAC  1041

seq1  CACAGACATCCCCATG-ACT-CTGGTAAGGACCCTCTTGGCTG-CTTCAC  1094
      |||| ||||||||||| ||| ||||||| ||||||||  |||| ||||| 
seq2  CACAAACATCCCCATGAACTCCTGGTAA-GACCCTCT--GCTGCCTTCAA  1088

seq1  AATGGCAATCACA-CTGTAAG  1114
      | || |||||||| |||||||
seq2  ATTGCCAATCACACCTGTAAG  1109