BAC Information

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BAC

Clone NameB6Ng01-065C19
Chromosome1 (Build37)
Map Location 113,138,768 - 113,139,850
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041429, EG626652, Cdh19
Downstream geneEG666578, Dsel, LOC547247, EG626897
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-065C19.bB6Ng01-065C19.g
ACCDH884729DH884730
length1,0751,260
definitionDH884729|Mus musculus domesticus DNA, BAC clone: B6Ng01-065C19, 5' end.DH884730|Mus musculus domesticus DNA, BAC clone: B6Ng01-065C19, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcactagtagaatttttgggtcgcttatgtatactatcatatcata
tgaaaatagtgatacctttctttcttatttaccaatttgtatccccttga
tctctttttgttgtcttattgttctagctaactcttcaagtattaaattg
aatagatatggggataatgggcatccttgtcttgtccccgatttcagtgg
gattgcttcaagtatgtctccatttaatttgatataggctgttggtttgc
cataaatttcttttgataggaagtatgtttatagcagctaacctttgaaa
agaagctgtcaaatactgttctgtgtctcctgatgctctaagagcctcag
aattatacctctactgccatctactggtcaacaaatatctaatattcaca
ttatacaattcatcccatttccagaattgcacagaagaaaatgtaaactt
aaaatttattacagaaaaggacatcagaactgtatggatctgatcccagc
ttttatttctacatttgtgtatattcatggagaagtactcacctagtcat
attaattttggatatcatcaaaatattgtcttcaaattacttgcagggtt
tgtgttgttttattttttttttgtgccagagttattctattacaaaataa
tgaccattcagcatgttttcctaggatgcatttctgtttagtttacagaa
tattataatagaaattcaattattaactaaactcaaaattaaaagttcat
atatatgtatatctgcatatatatatatccacatatgcaaatatatgtta
attacagtgcagagagtgtgatccactgtcacagtacccctccagaagaa
aagataccctgattttgtactatatttagcactacaatacaaggggggag
gggaaagcactatatcaaatgcaaaatatttaactatgcattttatttaa
aattctgtgaaactcctgaagactatttgatgtggttctactttcttctg
aaaggtacatattttgtcaaatatattatgtatattctataaaattcaaa
gattagtgttcccacataggaaggt
gaattccttcatctcagatttgaaccttccagacctgtaagaaaatttct
ttctgtgtatgcatgacacagactgtgagatttttgtcatagtaagtaaa
tattgcaaacaaatatattaataatagatcagctaagtatttatattaaa
agtcccatagtgatctcaaaatttggcaacactttgcatgtgcctgtttg
tcgtcagaactagaaagccctttgtaaagtggttttagaaataagagcgt
gtctcaatattgacataattctattaggaagaactgaagtttatatgggt
cattattttaacttacattatattttcaaattagattttattaatacgtt
tctttgtattggcaataagatgaacttttcactaaaatgcaaccaatcaa
aaattaaaatccagaggaagaaacaaaacaacactctctaagaataaaac
aagtagtatgatggagaaacttttaaatatatgtccaggagaaatatagc
tgggttgaaatacttctaattttccaaggaaaattcagattcattttcag
agtggttgtaccactttgcaatcccacgaagagtggagaattgttcctct
ttctccacattactgtcagcatgtgctgtcacatgagattttgatattag
ccattcaaattgctataatgtgaatataatcatttttaaattgcatttcc
ctgatggataaggatgctgagcatttctataaagtgcttctcaggcatta
gagactcatctattgggaagtctctatttagctcctgaaccccattttat
tttttctaattttttattagatattttcttcttttatatttcaaatgcta
tcccaaaagccccccataccctcccccaccctgctcactacccacccact
cctacttcgtggccctggaatttccctgtactggggcagataaagtttgc
aagaccaggcctcctattcccaatgatggccaactaagccttctgtgcta
catagcggcctaaagacatgagctgtgtggattcctggttagtccaattg
tttgttccacaattaagtggagatccctcacgctcctggactttctttag
tccctccattttggcctgtgtcctccctataataactggaagtcaccctt
tgtgtatttgccgcccgcacatgcctttagagatcatttctcttgcttcc
taatctgtcgattacgtcttcttcggggtgtatagtggtgacgaatccgt
tacgtagtat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_113138768_113139850
seq2: B6Ng01-065C19.b_49_1123

seq1  GAATTCACTAGTAGAATTTTTGGGTCGCTTATGTATACTATCATATCATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTAGTAGAATTTTTGGGTCGCTTATGTATACTATCATATCATA  50

seq1  TGAAAATAGTGATACCTTTCTTTCTTATTTACCAATTTGTATCCCCTTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAATAGTGATACCTTTCTTTCTTATTTACCAATTTGTATCCCCTTGA  100

seq1  TCTCTTTTTGTTGTCTTATTGTTCTAGCTAACTCTTCAAGTATTAAATTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTTTTGTTGTCTTATTGTTCTAGCTAACTCTTCAAGTATTAAATTG  150

seq1  AATAGATATGGGGATAATGGGCATCCTTGTCTTGTCCCCGATTTCAGTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGATATGGGGATAATGGGCATCCTTGTCTTGTCCCCGATTTCAGTGG  200

seq1  GATTGCTTCAAGTATGTCTCCATTTAATTTGATATAGGCTGTTGGTTTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGCTTCAAGTATGTCTCCATTTAATTTGATATAGGCTGTTGGTTTGC  250

seq1  CATAAATTTCTTTTGATAGGAAGTATGTTTATAGCAGCTAACCTTTGAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAATTTCTTTTGATAGGAAGTATGTTTATAGCAGCTAACCTTTGAAA  300

seq1  AGAAGCTGTCAAATACTGTTCTGTGTCTCCTGATGCTCTAAGAGCCTCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGCTGTCAAATACTGTTCTGTGTCTCCTGATGCTCTAAGAGCCTCAG  350

seq1  AATTATACCTCTACTGCCATCTACTGGTCAACAAATATCTAATATTCACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATACCTCTACTGCCATCTACTGGTCAACAAATATCTAATATTCACA  400

seq1  TTATACAATTCATCCCATTTCCAGAATTGCACAGAAGAAAATGTAAACTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATACAATTCATCCCATTTCCAGAATTGCACAGAAGAAAATGTAAACTT  450

seq1  AAAATTTATTACAGAAAAGGACATCAGAACTGTATGGATCTGATCCCAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTTATTACAGAAAAGGACATCAGAACTGTATGGATCTGATCCCAGC  500

seq1  TTTTATTTCTACATTTGTGTATATTCATGGAGAAGTACTCACCTAGTCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATTTCTACATTTGTGTATATTCATGGAGAAGTACTCACCTAGTCAT  550

seq1  ATTAATTTTGGATATCATCAAAATATTGTCTTCAAATTACTTGCAGGGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAATTTTGGATATCATCAAAATATTGTCTTCAAATTACTTGCAGGGTT  600

seq1  TGTGTTGTTTTATTTTTTTTTTGTGCCAGAGTTATTCTATTACAAAATAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTGTTTTATTTTTTTTTTGTGCCAGAGTTATTCTATTACAAAATAA  650

seq1  TGACCATTCAGCATGTTTTCCTAGGATGCATTTCTGTTTAGTTTACAGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCATTCAGCATGTTTTCCTAGGATGCATTTCTGTTTAGTTTACAGAA  700

seq1  TATTATAATAGAAATTCAATTATTAACTAAACTCAAAATTAAAAGTTCAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATAATAGAAATTCAATTATTAACTAAACTCAAAATTAAAAGTTCAT  750

seq1  ATATATGTATATCTGCATATATATATATCCACATATGCAAATATATGTTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATGTATATCTGCATATATATATATCCACATATGCAAATATATGTTA  800

seq1  ATTACAGTGCAGAGAGTGTGATCCACTGTCACAGTACCCCTCCAGAAGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACAGTGCAGAGAGTGTGATCCACTGTCACAGTACCCCTCCAGAAGAA  850

seq1  AAGATACCCTGATTTTGTACTATATTTAGCACTACAATACAAGGGGGGAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATACCCTGATTTTGTACTATATTTAGCACTACAATACAAGGGGGGAG  900

seq1  GGGAAAAGCACTATATCAAATGCAAAATATTTAACTATGCATTTTATTTA  950
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGG-AAAGCACTATATCAAATGCAAAATATTTAACTATGCATTTTATTTA  949

seq1  AAATTTCTGTGAAACT-CTGAAGACTATTTGATGTTGGTTCTACTTTCTT  999
      ||| |||||||||||| ||||||||||||||||| |||||||||||||||
seq2  AAA-TTCTGTGAAACTCCTGAAGACTATTTGATG-TGGTTCTACTTTCTT  997

seq1  CTGAAAAGTTACATA-TTTGTCAAATATAATTTATGTATAATCTATTACA  1048
      ||| |||| |||||| |||||||||||||  ||||||||| |||| || |
seq2  CTG-AAAGGTACATATTTTGTCAAATATA--TTATGTATATTCTA-TAAA  1043

seq1  ATTCAAAGATTTTAGTGTTTCTACATTAGGAAGGT  1083
      |||||||||  |||||||| | ||| |||||||||
seq2  ATTCAAAGA--TTAGTGTTCCCACA-TAGGAAGGT  1075