BAC Information

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BAC

Clone NameB6Ng01-065F01
Chromosome1 (Build37)
Map Location 85,229,463 - 85,341,530
singlet/doubletdoublet
Overlap geneC130026I21Rik, LOC100040135, LOC639868
Upstream gene5033414K04Rik, LOC100039638, Dner, Trip12, Fbxo36, Slc16a14, LOC100039695, EG665317, LOC100039723, A530032D15Rik, LOC100039742, LOC100040158, LOC621835, EG665378
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-065F01.bB6Ng01-065F01.g
ACCDH884824DH884825
length919896
definitionDH884824|Mus musculus domesticus DNA, BAC clone: B6Ng01-065F01, 5' end.DH884825|Mus musculus domesticus DNA, BAC clone: B6Ng01-065F01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(85,340,575 - 85,341,530)(85,229,463 - 85,230,350)
sequence
gaattccatcctttgcatgtggaggaagagaaggaccagggaaggaaagt
ggtccagcagtcaggtgatacagcaaaccaccaagactgatgcagaagga
ccaacttctcctgagggcagagatggccctggtcacagaatggttggccc
tgtcaccttggctacttcccttctcccactcactcacccagtggtggccc
agacctcaagccacgcttgtatttgtctcttagacaatcacaggaaagta
gaaaatttccaacagcccatggactacgtagaggtgtttcttcccctctt
ttacaccatatcttcttccttctcttcctctcttctttccctgatatttt
tgagatagggtctcatgtagaccaaaataaccacaaactcactatgtagc
caagggtcctgaccttcctgtcttgactttcctactatgtgccaccatac
ctgaattgtgatttttctgtgtttctatagaaccacctctcatttctcaa
actgtcaccattctccttgaagttgggaccaggaatgcatgtgttcctct
ccacatgttattctgattcttcctggttcccgtgttaacagtagtcatag
gaaaccccagcaacataccaagggaggttgtgaggaactcatttgaatac
ctttctgaatggcagaaacaaaacccactaaaactctcccatgaggacag
agtggggcaggaaactaatagaccatcctaggctctctcaactatttatg
gtttttgtctgtgtgtgtgtgtgtgtgtgtgtgtgttcattgttgttgtg
ttacaaggcttccagctgttttcaaaacctgactgtctgcctttatcgcc
tcagtggggtgcctaatccgtgtaacctaccccgtttttgagttttccag
atgttttaggcgtattaac
gaattctggccatttagatgtttcagaaattcaaaccacagttagaaacc
tgaattattcttttcctctgagaaggtcaaagattatggctgggaatgtc
tgctgggtagctaagtaatgacatgtacttacactggtggagagaaatta
tttaaaaaattatttttattatttagtgtgtgattttgctgcatgcatat
atgcatcatgtgtgtgcagtaacccaggggaccaggagaggacattggat
cccataggactgcagttatatatgtttgtactgtagatgctggaaattga
acctgggttctctgtaagaatagccagtgctcttaatcactgaggtatct
ctcctgtaccaccagagtattcgtaagggataagaggaccatgtgatgac
gggtctggccttgaggacattggaaaagactgagccataaggcttcctgc
ctccaagtgaggagctctctgataaaaggttggaggatactatagagggc
gctgctgaaggagagggtggaggtggagtaagaaccatctaccagaggca
agcatccagagaggtgaactctgattgagttctgtaagaaagaatcagta
agcaccaattttcctacccaacacacaaacgtgtagctcagactttattt
tttcaaaaccttactattaaaatgggttctttaaatactttagctccccc
ttctagccctccacccaacagaggtagtgggaaagaaaggttatgaggat
acaggggagttggacctgtttagaaatagttctttggagcaaatcccatc
tgcgttgtcaggaacttcaccagttcagttcacaggaatcagcagaggct
gctccatccacttgaaacacttcatgaatatactagcagtccagct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_85340575_85341530
seq2: B6Ng01-065F01.b_45_963 (reverse)

seq1  GTTATATACTGCCT-AAACATCTGGAAAAGTCAGAAATGGGGT-GGGTAC  48
      |||| |||| |||| |||||||||||||| ||| ||| ||||| || |||
seq2  GTTA-ATAC-GCCTAAAACATCTGGAAAACTCAAAAACGGGGTAGGTTAC  48

seq1  ACGGATTAAGGAACTCCACTGAGGAGATTAAGGCAGTACAGTCATGGTTT  98
      ||||||| ||| || ||||||||| ||| ||||||| ||||||| |||||
seq2  ACGGATT-AGGCACCCCACTGAGGCGATAAAGGCAG-ACAGTCA-GGTTT  95

seq1  TGAAGACAGCTTGAAGCCTTGTAACAACAACAACAATGAAACACACACAC  148
      |||| |||||| ||||||||||||| |||||||||||||           
seq2  TGAAAACAGCTGGAAGCCTTGTAAC-ACAACAACAATGA-----------  133

seq1  ACAGACACACACACACACACACACACACACACACACACACACACACACAG  198
                            ||||||||||||||||||||||||||||
seq2  ----------------------ACACACACACACACACACACACACACAG  161

seq1  ACAAAAACCATAAATAGTTGAGAGAGCCTAGGATGGTCTATTAGTTTCCT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAACCATAAATAGTTGAGAGAGCCTAGGATGGTCTATTAGTTTCCT  211

seq1  GCCCCACTCTGTCCTCATGGGAGAGTTTTAGTGGGTTTTGTTTCTGCCAT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCACTCTGTCCTCATGGGAGAGTTTTAGTGGGTTTTGTTTCTGCCAT  261

seq1  TCAGAAAGGTATTCAAATGAGTTCCTCACAACCTCCCTTGGTATGTTGCT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAAAGGTATTCAAATGAGTTCCTCACAACCTCCCTTGGTATGTTGCT  311

seq1  GGGGTTTCCTATGACTACTGTTAACACAGGAACCAGGAAGAATCAGAATA  398
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  GGGGTTTCCTATGACTACTGTTAACACGGGAACCAGGAAGAATCAGAATA  361

seq1  ACATGTGGAGAGGAACACATGCATTCCTGGTCCCAACTTCAAGGAGAATG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGTGGAGAGGAACACATGCATTCCTGGTCCCAACTTCAAGGAGAATG  411

seq1  GTGACAGTTTGAGAAATGAGAGGTGGTTCTATAGGAACACAGAAAAATCA  498
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  GTGACAGTTTGAGAAATGAGAGGTGGTTCTATAGAAACACAGAAAAATCA  461

seq1  CAATTCAGGTATGGTGGCACATAGTAGGAAAGTCAAGACGGGAAGGTCAG  548
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  CAATTCAGGTATGGTGGCACATAGTAGGAAAGTCAAGACAGGAAGGTCAG  511

seq1  GACCCTTGGCTACATAGTGAGTTTGTGGTTATTTTGGTCTACATGAGACC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCTTGGCTACATAGTGAGTTTGTGGTTATTTTGGTCTACATGAGACC  561

seq1  CTATCTCAAAAATATCAGGGAAAGAATAGAGGAAGAGAAGGAAGAAGATA  648
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  CTATCTCAAAAATATCAGGGAAAGAAGAGAGGAAGAGAAGGAAGAAGATA  611

seq1  TGGTGTAAAAGAGGGGAAGAAACACCTCTACATAGTCCATGGGCTGTTGG  698
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TGGTGTAAAAGAGGGGAAGAAACACCTCTACGTAGTCCATGGGCTGTTGG  661

seq1  AAATTTTCTACTTTCCTGTGATTGTCTAAGGGACAAATACAAGCGTGGCT  748
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  AAATTTTCTACTTTCCTGTGATTGTCTAAGAGACAAATACAAGCGTGGCT  711

seq1  TGAGGTCTGGGCCACCACTGGGTGAGTGAGTGGGAGAAGGGAAGTAGCCA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGTCTGGGCCACCACTGGGTGAGTGAGTGGGAGAAGGGAAGTAGCCA  761

seq1  AGGTGACAGGGCCAACCATTCTGTGACCAGGGCCATCTCTGCCCTCAGGA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGACAGGGCCAACCATTCTGTGACCAGGGCCATCTCTGCCCTCAGGA  811

seq1  GAAGTTGGTCCTTCTGCATCAGTCTTGGTGGTTTGCGCTATCACCTGACT  898
      ||||||||||||||||||||||||||||||||||||  ||||||||||||
seq2  GAAGTTGGTCCTTCTGCATCAGTCTTGGTGGTTTGCTGTATCACCTGACT  861

seq1  GCTGGACCACTTTCCTTCCCTGGTCCTTCTCTTCCTCCACATGCAAAGGA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGACCACTTTCCTTCCCTGGTCCTTCTCTTCCTCCACATGCAAAGGA  911

seq1  TGGAATTC  956
      ||||||||
seq2  TGGAATTC  919

seq1: chr1_85229463_85230350
seq2: B6Ng01-065F01.g_69_957

seq1  GAATTCTGGCCATTTAGATGTTTCAGAAATTCAAACCACAGTTAGAAACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGGCCATTTAGATGTTTCAGAAATTCAAACCACAGTTAGAAACC  50

seq1  TGAATTATTCTTTTCCTCTGAGAAGGTCAAAGATTATGGCTGGGAATGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTATTCTTTTCCTCTGAGAAGGTCAAAGATTATGGCTGGGAATGTC  100

seq1  TGCTGGGTAGCTAAGTAATGACATGTACTTACACTGGTGGAGAGAAATTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGGTAGCTAAGTAATGACATGTACTTACACTGGTGGAGAGAAATTA  150

seq1  TTTAAAAAATTATTTTTATTATTTAGTGTGTGATTTTGCTGCATGCATAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAAAATTATTTTTATTATTTAGTGTGTGATTTTGCTGCATGCATAT  200

seq1  ATGCATCATGTGTGTGCAGTAACCCAGGAGACCAGGAGAGGACATTGGAT  250
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  ATGCATCATGTGTGTGCAGTAACCCAGGGGACCAGGAGAGGACATTGGAT  250

seq1  CCCATAGGACTGCAGCTATATATGGTTGTACTGTAGATGCTGGGAATTGA  300
      ||||||||||||||| |||||||| |||||||||||||||||| ||||||
seq2  CCCATAGGACTGCAGTTATATATGTTTGTACTGTAGATGCTGGAAATTGA  300

seq1  ACCTGGGTTCTCTGTAAGAATAGCCAGTGCTCTTAATCACTGAGGTATCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGGGTTCTCTGTAAGAATAGCCAGTGCTCTTAATCACTGAGGTATCT  350

seq1  CTCCTGTACCACCAGAGTATTCGTAAGGGATAAGAGGACCATGTGATGAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGTACCACCAGAGTATTCGTAAGGGATAAGAGGACCATGTGATGAC  400

seq1  GGGTCTGGCCTTGAGGACATTGGAAAAGACTGAGCCATAAGGCTTCCTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCTGGCCTTGAGGACATTGGAAAAGACTGAGCCATAAGGCTTCCTGC  450

seq1  CTCCAAGTGAGGAGCTCTCTGATAAAAGGTTGGAGGATACTATAGAGGGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAAGTGAGGAGCTCTCTGATAAAAGGTTGGAGGATACTATAGAGGGC  500

seq1  GCTGCTGAAGGAGAGGGTTGAGGTGGAGTAAGAACCATCTACCAGAGGCA  550
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  GCTGCTGAAGGAGAGGGTGGAGGTGGAGTAAGAACCATCTACCAGAGGCA  550

seq1  AGCATCCAGAGAGGTGAACTCTGATTGAGTTCTGTAAGAAAGAATCAGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATCCAGAGAGGTGAACTCTGATTGAGTTCTGTAAGAAAGAATCAGTA  600

seq1  AGCACCAATTTTCCTACCCAACACACAAACGTGTAGCTCAGACTTTATTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACCAATTTTCCTACCCAACACACAAACGTGTAGCTCAGACTTTATTT  650

seq1  TTTCAAAACCTTACTTTTAAAATGGGTTC-TTAAATACTTTAACTCCCCC  699
      ||||||||||||||| ||||||||||||| |||||||||||| |||||||
seq2  TTTCAAAACCTTACTATTAAAATGGGTTCTTTAAATACTTTAGCTCCCCC  700

seq1  TTCTAGCCCTCCACCCACCAGAGGTAGTGGAAAAGAAAGGTTATGAGGAT  749
      ||||||||||||||||| |||||||||||| |||||||||||||||||||
seq2  TTCTAGCCCTCCACCCAACAGAGGTAGTGGGAAAGAAAGGTTATGAGGAT  750

seq1  ACAGGGGAGTTGGACCTGTTTAGAAATAGTTCTTTGGAGCAAATCCCATC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGGGAGTTGGACCTGTTTAGAAATAGTTCTTTGGAGCAAATCCCATC  800

seq1  TGCGTTGTCAGGAAC-TCAGCAGTTCAGTTCACAGGAATCAGCAGAGGCT  848
      ||||||||||||||| ||| ||||||||||||||||||||||||||||||
seq2  TGCGTTGTCAGGAACTTCACCAGTTCAGTTCACAGGAATCAGCAGAGGCT  850

seq1  GCTCCATCCACTTGAAAACATTTCACGAATATACTAGCAG  888
      |||||||||||||| ||||| |||| ||||||||||||||
seq2  GCTCCATCCACTTG-AAACACTTCATGAATATACTAGCAG  889