BAC Information

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BAC

Clone NameB6Ng01-065G20
Chromosome1 (Build37)
Map Location 167,682,302 - 167,842,176
singlet/doubletdoublet
Overlap geneCreg1, Cd247, Pou2f1
Upstream geneDpt, Xcl1, 1700029M03Rik, Tbx19, Sft2d2, Tiprl, Gpr161, Iqwd1, Brp44, Sacy, Ppia-ps1-1625, Mpzl1, Rcsd1
Downstream geneLOC665409, Dusp27, Gpa33, Mael, LOC100039795, Tada1l, Pogk, LOC100040287, EG226601, EG226604, 4831428F09Rik, LOC240895
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-065G20.bB6Ng01-065G20.g
ACCDH884904DH884905
length980930
definitionDH884904|Mus musculus domesticus DNA, BAC clone: B6Ng01-065G20, 5' end.DH884905|Mus musculus domesticus DNA, BAC clone: B6Ng01-065G20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(167,682,302 - 167,683,275)(167,840,918 - 167,842,176)
sequence
gaaattcttttccagtgtgagcacagcgggcacatagacaacaccataga
caacaccatctgtccaacacagattgataagtaacttcgtaaaagtaaag
aggattggactggagagatgcctttgccattaaaggctaggcttacaacc
aaagcctgtacattttaccaaaataggtcggcatcatatgaacacaaggg
atattagaatcgtctaaggagctggagagaaagagctcaccaactgaaag
cactgatttctcttccagaggacctgagttcagttccccaaaaccataca
gctcctcacagccttctgtaactccagttacagggactctgacaccctct
ctggactctgtgagcagcgtgtatacccagtacacataacattcaagcaa
aatgctccaacacataacataaaacacatacatctaaaactttttatcat
accttatatgaaacttaaggaaacttatcaaacacacaagaacgaggaaa
gggtatgcctttacctgaactgcctaaagaggacattaaaccactgtaac
catgataatccaccctgcccactcccgcaccccacctccactgccaaact
gacatgtggcctcctgctatgtcaaggggatcagtaggtagagaactatc
aactatcacaaggggtttagttcagctcagcccccaccttagatatgacc
cccaatggcgatccatctgcttatccatccaaacctgttatctcttcatc
tagatccaggccagttctttatctcagtggcctccagggccctgaacctc
tgcctctgcagctcaagtctgacctggggttgacttctgtagcagagtct
ctatcagacctctgacagggttatcgtgggacacaccccctcccctactc
gttttggcttccctatcatctgggtcctctttgaactcttgtaaagtact
gtgatgccttctttaccctttttaacagtt
gaattccaggttcatgtaccttgaagactattaattctgggtgtttagat
tcatttgtgtttaagagggtggctcttaccacctgtttcctagagataat
aagttggaaaaaaatgtaaacttgcaaaccaatgcttttcaagggcagga
gattgggtaagggagggtcctggaggaggatttttaaaggaaacaagtgt
ggctcctgatttttagtcacatgtgaagatgtgatggaagtagtgaaata
cgatggggattcaagcagctgggccttaccagttctcttcctgcacctgc
cagcatccttttgtccctcattcatcacctgctgttggatataaatgtct
ttgcatcctgtcagcatcagtcctttgttttcattccttgtctaaatgat
tgttcaagtctgaagtgcagactactttaagttaaatgctgtggtagaac
aggtagtttgttcattggtggacaggtttagctgtacattgaccagtagt
gagaacctaatccccactttgagttacctatttaaaggcactcaatcttt
tccctttcattgttcttactctagctcacgttgaccccagcccagcaaca
gttactgctacagcaggcgcaggcccaggcccagctcctggccgctgcag
tgcagcaacactccgccagccaacagcacagtgctgctgggggccaccat
ctcagcctccgccgcacacgcatgacgcagatccccctgtctcagcccat
acagattgcacaggtgaggaagggaagagcaaggttactgggacagcaaa
cagcaattaaatgggaaatcctcttcaatttggtagcctctgggtgccgc
tggggtctttaacacccaaggaactctgttcagggaggcattatcgcgtc
ttccctttgcttatcgagtgaattataaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_167682302_167683275
seq2: B6Ng01-065G20.b_37_1014

seq1  AATTCTTTTCCAGTGTGAGCACAGCGGGCACATAGACAACACCATAGACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTTTTCCAGTGTGAGCACAGCGGGCACATAGACAACACCATAGACA  50

seq1  ACACCATCTGTCCAACACAGACTGATAAGTAACTTCGTAAAAGTAAAGAG  100
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  ACACCATCTGTCCAACACAGATTGATAAGTAACTTCGTAAAAGTAAAGAG  100

seq1  GATTGGACTGGAGAGATGCCTTTGCCATTAAAGGCTAGGCTTACAACCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGGACTGGAGAGATGCCTTTGCCATTAAAGGCTAGGCTTACAACCAA  150

seq1  AGCCTGTACATTTTACCAAAATAGGTCGGCATCATATGAACACAAGGGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTGTACATTTTACCAAAATAGGTCGGCATCATATGAACACAAGGGAT  200

seq1  ATTAGAATCGTCTAAGGAGCTGGAGAGAAAGAGCTCACCAACTGAAAGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGAATCGTCTAAGGAGCTGGAGAGAAAGAGCTCACCAACTGAAAGCA  250

seq1  CTGATTTCTCTTCCAGAGGACCTGAGTTCAGTTCCCCAAAACCATACAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATTTCTCTTCCAGAGGACCTGAGTTCAGTTCCCCAAAACCATACAGC  300

seq1  TCCTCACAGCCTTCTGTAACTCCAGTTACAGGGACTCTGACACCCTCTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCACAGCCTTCTGTAACTCCAGTTACAGGGACTCTGACACCCTCTCT  350

seq1  GGACTCTGTGAGCAGCGTGTATACCCAGTACACATAACATTCAAGCAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTCTGTGAGCAGCGTGTATACCCAGTACACATAACATTCAAGCAAAA  400

seq1  TGCTCCAACACATAACATAAAACACATACATCTAAAACTTTTTATCATAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCCAACACATAACATAAAACACATACATCTAAAACTTTTTATCATAC  450

seq1  CTTATATGAAACTTAAGGAAACTTATCAAACACACAAGAACGAGGAAAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATATGAAACTTAAGGAAACTTATCAAACACACAAGAACGAGGAAAGG  500

seq1  GTATGCCTTTACCTGAACTGCCTAAAGAGGACATT-AACCACTGTAACCA  549
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  GTATGCCTTTACCTGAACTGCCTAAAGAGGACATTAAACCACTGTAACCA  550

seq1  TGATAATCCACCCTGCCCACTCCCGCACCCCACCTCCACTGCCAAACTGA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAATCCACCCTGCCCACTCCCGCACCCCACCTCCACTGCCAAACTGA  600

seq1  CATGTGGCCTCCTGCTATGTCAA-GGGATCAGTAGGTAGAGAACTATCAA  648
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  CATGTGGCCTCCTGCTATGTCAAGGGGATCAGTAGGTAGAGAACTATCAA  650

seq1  CTATCACAAGGGGTTTAGTTCAGCTCAGCCCCCACCTTAGATATGACCCC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCACAAGGGGTTTAGTTCAGCTCAGCCCCCACCTTAGATATGACCCC  700

seq1  CAATGGCGATCCATCTGCTTATCCATCCAAACCTGTTATCTCTTCATCTA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGGCGATCCATCTGCTTATCCATCCAAACCTGTTATCTCTTCATCTA  750

seq1  GATCCAGGCCAGTTCTTTATCTCAGTGGCCTCCAGGGTCCTGAACCTCTG  798
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  GATCCAGGCCAGTTCTTTATCTCAGTGGCCTCCAGGGCCCTGAACCTCTG  800

seq1  CCTCTGCAGCTCAAGTCTGACCTGGGGTTTGAC-TCTGTAGCAGAGTCTC  847
      ||||||||||||||||||||||||||| ||||| ||||||||||||||||
seq2  CCTCTGCAGCTCAAGTCTGACCTGGGG-TTGACTTCTGTAGCAGAGTCTC  849

seq1  TATCAGACCTCTGACAGGGTTAATCGTGGGACACA-CCCCTCCCCTACTC  896
      ||||||||||||||||||||| ||||||||||||| ||||||||||||||
seq2  TATCAGACCTCTGACAGGGTT-ATCGTGGGACACACCCCCTCCCCTACTC  898

seq1  GTTTT-GCTTCCCTATCATCT-GGTTCTCTTTGGAACTCTT-TAAAGTAC  943
      ||||| ||||||||||||||| ||| |||||| |||||||| ||||||||
seq2  GTTTTGGCTTCCCTATCATCTGGGTCCTCTTT-GAACTCTTGTAAAGTAC  947

seq1  TGTGATGCCTCTTTAACCCTTTTTAACAGTT  974
      ||||||||||  || ||||||||||||||||
seq2  TGTGATGCCTTCTTTACCCTTTTTAACAGTT  978

seq1: chr1_167840918_167842176
seq2: B6Ng01-065G20.g_68_997 (reverse)

seq1  TGTTATAATTCTTTATGACTCTAAGTAATTTTTAAACTACCTTTGGATAT  50
                                                        
seq2  --------------------------------------------------  0

seq1  TTTATTTGAAAACGTAAAAACTGAAACCCTGTAACATTTTAATGCAGTTC  100
                                                        
seq2  --------------------------------------------------  0

seq1  TCCATGGTCCTAGTCACTCCACAGCAGAAAGATGACTTGCTGTCTTTTTT  150
                                                        
seq2  --------------------------------------------------  0

seq1  TACAAGGTGGCAACACTTACTATAGAGCACATGGAAGAATTTTTGCCTGC  200
                                                        
seq2  --------------------------------------------------  0

seq1  TATGATTGGCTAATAAGATGAATTAAGATGAATACTGAAACCCCTTGCCT  250
                                                        
seq2  --------------------------------------------------  0

seq1  CAGAAATATGCCAGCTACTTACTCAAGAATTTCATTTAACATAAACATTC  300
                                                        
seq2  --------------------------------------------------  0

seq1  ACTTATTCAAATAACCAGCTAGATGTTTATAATATCAACTCAAATAAGCA  350
                             || ||||||| || ||||  |||||| 
seq2  -----------------------TG-TTATAAT-TC-ACTC-GATAAGC-  22

seq1  AAAGGGAAGAAGCGATAATGCCACCTTGAACCAGAGTTCCTTGGGTGTTT  400
      |||||||||| ||||||||||| || |||| |||||||||||||||| ||
seq2  AAAGGGAAGACGCGATAATGCCTCCCTGAA-CAGAGTTCCTTGGGTG-TT  70

seq1  AAAGACCCACAGCAGCAACCAGAAGGCTAACAATATGGAAGAGAATTTCC  450
      |||||||| |||| ||| |||| |||||| ||| || |||||| ||||||
seq2  AAAGACCC-CAGCGGCACCCAG-AGGCTACCAA-ATTGAAGAGGATTTCC  117

seq1  CATTTTATTGGCTGTTTGCTGTCCCAGTAACCTTGCTCTTCCCTTCCTCA  500
      ||||| ||| ||||||||||||||||||||||||||||||||||||||||
seq2  CATTTAATT-GCTGTTTGCTGTCCCAGTAACCTTGCTCTTCCCTTCCTCA  166

seq1  CCTGTGCAATCTGTATGGGCTGAGACAGGGGGATCTGCGTCATGGGTGTG  550
      |||||||||||||||||||||||||||||||||||||||||||| |||| 
seq2  CCTGTGCAATCTGTATGGGCTGAGACAGGGGGATCTGCGTCATGCGTGT-  215

seq1  GCGGCGGAGGCTGAGATGGTGG-CCCCAGCAGCACTGTGCTGTTGGCTGG  599
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  GCGGCGGAGGCTGAGATGGTGGCCCCCAGCAGCACTGTGCTGTTGGCTGG  265

seq1  CGGAGTGTTGCTGCACTGCAGCGGCCAGGAGCTGGGCCTGGGCCTGCGCC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGAGTGTTGCTGCACTGCAGCGGCCAGGAGCTGGGCCTGGGCCTGCGCC  315

seq1  TGCTGTAGCAGTAACTGTTGCTGGGCTGGGGTCAACGTGAGCTAGAGTAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGTAGCAGTAACTGTTGCTGGGCTGGGGTCAACGTGAGCTAGAGTAA  365

seq1  GAACAATGAA--GGGAAAGATTGAGTGCCTTTAAATAGGTAACTC-AAGT  746
      ||||||||||  || |||||||||||||||||||||||||||||| ||||
seq2  GAACAATGAAAGGGAAAAGATTGAGTGCCTTTAAATAGGTAACTCAAAGT  415

seq1  -GGGATTAGGTTCTCACTACTGGTCAATGTACAGCT-AACCTGTCCACCA  794
       ||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  GGGGATTAGGTTCTCACTACTGGTCAATGTACAGCTAAACCTGTCCACCA  465

seq1  ATGAACAAACTACCTGTTCTACCACAGCATTTAACTTAAAGTAGTCTGCA  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAACAAACTACCTGTTCTACCACAGCATTTAACTTAAAGTAGTCTGCA  515

seq1  CTTCAGACTTGAACAATCATTTAGACAAGGAATGAAAACAAAGGACTGAT  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGACTTGAACAATCATTTAGACAAGGAATGAAAACAAAGGACTGAT  565

seq1  GCTGACAGGATGCAAAGACATTTATATCCAACAGCAGGTGATGAATGAGG  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGACAGGATGCAAAGACATTTATATCCAACAGCAGGTGATGAATGAGG  615

seq1  GACAAAAGGATGCTGGCAGGTGCAGGAAGAGAACTGGTAAGGCCCAGCTG  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAAAGGATGCTGGCAGGTGCAGGAAGAGAACTGGTAAGGCCCAGCTG  665

seq1  CTTGAATCCCCATCGTATTTCACTACTTCCATCACATCTTCACATGTGAC  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAATCCCCATCGTATTTCACTACTTCCATCACATCTTCACATGTGAC  715

seq1  TAAAAATCAGGAGCCACACTTGTTTCCTTTAAAAATCCTCCTCCAGGACC  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAATCAGGAGCCACACTTGTTTCCTTTAAAAATCCTCCTCCAGGACC  765

seq1  CTCCCTTACCCAATCTCCTGCCCTTGAAAAGCATTGGTTTGCAAGTTTAC  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTTACCCAATCTCCTGCCCTTGAAAAGCATTGGTTTGCAAGTTTAC  815

seq1  ATTTTTTTCCAACTTATTATCTCTAGGAAACAGGTGGTAAGAGCCACCCT  1194
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTTCCAACTTATTATCTCTAGGAAACAGGTGGTAAGAGCCACCCT  865

seq1  CTTAAACACAAATGAATCTAAACACCCAGAATTAATAGTCTTCAAGGTAC  1244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAACACAAATGAATCTAAACACCCAGAATTAATAGTCTTCAAGGTAC  915

seq1  ATGAACCTGGAATTC  1259
      |||||||||||||||
seq2  ATGAACCTGGAATTC  930