BAC Information

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BAC

Clone NameB6Ng01-065K03
Chromosome1 (Build37)
Map Location 80,431,687 - 80,580,912
singlet/doubletdoublet
Overlap gene1700016L21Rik, Dock10
Upstream geneScg2, Ap1s3, Wdfy1, Mrpl44, Serpine2, EG433326, LOC665064, LOC100039325, A830043J08Rik, 2310015K22Rik, Cul3, EG620899
Downstream geneLOC665092, 9430031J16Rik, EG621020
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-065K03.bB6Ng01-065K03.g
ACCDH885048DH885049
length1,0361,057
definitionDH885048|Mus musculus domesticus DNA, BAC clone: B6Ng01-065K03, 5' end.DH885049|Mus musculus domesticus DNA, BAC clone: B6Ng01-065K03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(80,579,872 - 80,580,912)(80,431,687 - 80,432,772)
sequence
gaattcctcaaaggagggaaaacttggcatagactcatgacaaaaacaaa
gatcagcaatgaacaagctgatttaaaagggcttaattacaggcctagta
gaaaacttagccccacttagtgaatgttaataacattatcccaaaggtag
tcacttcgttaaaaattcaaagcgcagaaggagagctgacctgttgtgta
ttcttctattcacatggcttccactgggaaacacattcagagaaaaccca
ccagtgtgtgtcagaatgttgtggtcattatttaacattaaggactgaga
tatagcagtggtgtggagtccaacaccagtaatgcaagaaaattactgaa
ggctgcaagtaccaacttgcattcagacagtcttgcagcaagggtgggtg
agccaggctgcagagcctggtaacccagcctacctgtcaaggtcaactct
ctgtttattgtgtcattgaacaaggctcctctttgggtcctgagtctcat
ccataggatggagcagccaatacttgcttcatgggcaatatcttctacta
acttctgatgtacaaggatttggtataaaatatgtcatggatattatttt
atctctccatccctatctttccttccagagataactaatggtagacatga
aaaacatgttacagacattgtcgttattactattattgctggaggtcact
tgtcaagttcatgttcacgatctgtagctccccatttcttgtaaatttgg
tccagtgaagaggagtgtgaagggtggaagtaagtcatgtgtcagttatt
ggcagaagtgacatcctgactctgaaattgtcaacaaactgtctgaaaga
cagatggcacttccatggcagctgaaagtgttatcagctcttggggctgt
tatttctaggaaaatagaactatcaaactgcaagcccatgctggatgacg
ctcagttagtgctttgctgtgtagaacttgtaaaacaaccggtgacttgt
atttacttgaagttgctcgggcagtttgtgtgtgtg
gaattccttcaggtttatagtcaggtttcgttgaagttcaccttaatttc
ttttagattggggacttattgctttgtatttactggtatatctattagtt
tcttttcaaatagataccaatatggtgattttaatataggaatacccaca
aatttagcaatgcaactctcaacaaacaagaaacttgaaaatataggtag
agaaattgactgtcatgatttagaattcaatccacattgctggtttatat
ttaataaatgtgagtcaagttgaaggaaggaggtcatggtaagcaatatg
caaaacttgttaaaagataaatacaataagaattaattctgcattaccag
taccatacatattttattgatagcccataaataaaagattagtttcttag
gtaaattagaattctatcattgtaagtccaggatccaactgagtaatact
gatatattgtgaagaaatcatttaactagaggaatgttaggtcattgtgt
gtctgcatgatggaatgctctgtaatttaaacacacacacacacacacac
acacacacacacacacacacacacaccccagatggacagacagacgttga
acttttgttcccaattctttttttttaaaagatttatttatttatttatt
acatgtaagtacactgtagctgtcttcagaccctccagaagagggagtca
gatctcattacggatggttgtgagccatcatgtggttgctgggatttgaa
cttcggaccttcggaagagcagtcgggtgctcttacccactgagccatct
caccagcccctgttcccaattctaagaaggggcaaagtgtccatactttg
gtcttcgtttttcttgcttttcatattagcaaattgtatctatatctggg
tatctaagtttctgggctatatccacttatcagtgagtacatatgtgtga
gtattgtgatgggtacctcactaggtccatccatttgccaagatacataa
atcatcttttttttttcctttttttggttttcggacagtttctctgatag
cctggct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_80579872_80580912
seq2: B6Ng01-065K03.b_49_1084 (reverse)

seq1  --CACACACACACTTGCCCGAGCAAC-TCAAGTAAATACAAGTCACCGGT  47
        |||||||| || |||||||||||| |||||||||||||||||||||||
seq2  CACACACACAAAC-TGCCCGAGCAACTTCAAGTAAATACAAGTCACCGGT  49

seq1  TGTTTGTACAAGTTCCTAACAACAGCCAAAGCACTAACTGAGCCGTCATC  97
      ||||| |||||||| |||   |||| |||||||||||||||| |||||||
seq2  TGTTT-TACAAGTT-CTA--CACAG-CAAAGCACTAACTGAG-CGTCATC  93

seq1  CAGCATGGGCTTGCAGTTTTGATAGTTCTATTTTCCTAGAAATAACAGCC  147
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  CAGCATGGGCTTGCAG-TTTGATAGTTCTATTTTCCTAGAAATAACAGCC  142

seq1  CCAAGAGCTGATAACACTTTCAGCTGCCATGGAAGTGCCATCTGTCTTTC  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGAGCTGATAACACTTTCAGCTGCCATGGAAGTGCCATCTGTCTTTC  192

seq1  AGACAGTTTGTTGACAATTTCAGAGTCAGGATGTCACTTCTGCCAATAAC  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGTTTGTTGACAATTTCAGAGTCAGGATGTCACTTCTGCCAATAAC  242

seq1  TGACACATGACTTACTTCCACCCTTCACACTCCTCTTCACTGGACCAAAT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACACATGACTTACTTCCACCCTTCACACTCCTCTTCACTGGACCAAAT  292

seq1  TTACAAGAAATGGGGAGCTACAGATCGTGAACATGAACTTGACAAGTGAC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAAGAAATGGGGAGCTACAGATCGTGAACATGAACTTGACAAGTGAC  342

seq1  CTCCAGCAATAATAGTAATAACGACAATGTCTGTAACATGTTTTTCATGT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGCAATAATAGTAATAACGACAATGTCTGTAACATGTTTTTCATGT  392

seq1  CTACCATTAGTTATCTCTGGAAGGAAAGATAGGGATGGAGAGATAAAATA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCATTAGTTATCTCTGGAAGGAAAGATAGGGATGGAGAGATAAAATA  442

seq1  ATATCCATGACATATTTTATACCAAATCCTTGTACATCAGAAGTTAGTAG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCCATGACATATTTTATACCAAATCCTTGTACATCAGAAGTTAGTAG  492

seq1  AAGATATTGCCCATGAAGCAAGTATTGGCTGCTCCATCCTATGGATGAGA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATATTGCCCATGAAGCAAGTATTGGCTGCTCCATCCTATGGATGAGA  542

seq1  CTCAGGACCCAAAGAGGAGCCTTGTTCAATGACACAATAAACAGAGAGTT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGGACCCAAAGAGGAGCCTTGTTCAATGACACAATAAACAGAGAGTT  592

seq1  GACCTTGACAGGTAGGCTGGGTTACCAGGCTCTGCAGCCTGGCTCACCCA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTTGACAGGTAGGCTGGGTTACCAGGCTCTGCAGCCTGGCTCACCCA  642

seq1  CCCTTGCTGCAAGACTGTCTGAATGCAAGTTGGTACTTGCAGCCTTCAGT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTGCTGCAAGACTGTCTGAATGCAAGTTGGTACTTGCAGCCTTCAGT  692

seq1  AATTTTCTTGCATTACTGGTGTTGGACTCCACACCACTGCTATATCTCAG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTCTTGCATTACTGGTGTTGGACTCCACACCACTGCTATATCTCAG  742

seq1  TCCTTAATGTTAAATAATGACCACAACATTCTGACACACACTGGTGGGTT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTAATGTTAAATAATGACCACAACATTCTGACACACACTGGTGGGTT  792

seq1  TTCTCTGAATGTGTTTCCCAGTGGAAGCCATGTGAATAGAAGAATACACA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTGAATGTGTTTCCCAGTGGAAGCCATGTGAATAGAAGAATACACA  842

seq1  ACAGGTCAGCTCTCCTTCTGCGCTTTGAATTTTTAACGAAGTGACTACCT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGTCAGCTCTCCTTCTGCGCTTTGAATTTTTAACGAAGTGACTACCT  892

seq1  TTGGGATAATGTTATTAACATTCACTAAGTGGGGCTAAGTTTTCTACTAG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGATAATGTTATTAACATTCACTAAGTGGGGCTAAGTTTTCTACTAG  942

seq1  GCCTGTAATTAAGCCCTTTTAAATCAGCTTGTTCATTGCTGATCTTTGTT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGTAATTAAGCCCTTTTAAATCAGCTTGTTCATTGCTGATCTTTGTT  992

seq1  TTTGTCATGAGTCTATGCCAAGTTTTCCCTCCTTTGAGGAATTC  1041
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCATGAGTCTATGCCAAGTTTTCCCTCCTTTGAGGAATTC  1036

seq1: chr1_80431687_80432772
seq2: B6Ng01-065K03.g_68_1124

seq1  GAATTCCTTCAGGTTTATAGTCAGGTTTCGTTGAAGTTCACCTTAATTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTCAGGTTTATAGTCAGGTTTCGTTGAAGTTCACCTTAATTTC  50

seq1  TTTTAGATTGGGGACTTATTGCTTTGTATTTACTGGTATATCTATTAGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGATTGGGGACTTATTGCTTTGTATTTACTGGTATATCTATTAGTT  100

seq1  TCTTTTCAAATAGATACCAATATGGTGATTTTAATATAGGAATACCCACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTCAAATAGATACCAATATGGTGATTTTAATATAGGAATACCCACA  150

seq1  AATTTAGCAATGCAACTCTCAACAAACAAGAAACTTGAAAATATAGGTAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTAGCAATGCAACTCTCAACAAACAAGAAACTTGAAAATATAGGTAG  200

seq1  AGAAATTGACTGTCATGATTTAGAATTCAATCCACATTGCTGGTTTATAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATTGACTGTCATGATTTAGAATTCAATCCACATTGCTGGTTTATAT  250

seq1  TTAATAAATGTGAGTCAAGTTGAAGGAAGGAGGTCATGGTAAGCAATATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATAAATGTGAGTCAAGTTGAAGGAAGGAGGTCATGGTAAGCAATATG  300

seq1  CAAAACTTGTTAAAAGATAAATACAATAAGAATTAATTCTGCATTACCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACTTGTTAAAAGATAAATACAATAAGAATTAATTCTGCATTACCAG  350

seq1  TACCATACATATTTTATTGATAGCCCATAAATAAAAGATTAGTTTCTTAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCATACATATTTTATTGATAGCCCATAAATAAAAGATTAGTTTCTTAG  400

seq1  GTAAATTAGAATTCTATCATTGTAAGTCCAGGATCCAACTGAGTAATACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAATTAGAATTCTATCATTGTAAGTCCAGGATCCAACTGAGTAATACT  450

seq1  GATATATTGTGAAGAAATCATTTAACTAGAGGAATGTTAGGTCATTGTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATATTGTGAAGAAATCATTTAACTAGAGGAATGTTAGGTCATTGTGT  500

seq1  GTCTGCATGATGGAATGCTCTGTAATTTAAACACACACACACACACACAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGCATGATGGAATGCTCTGTAATTTAAACACACACACACACACACAC  550

seq1  ACACACACACACACACACACACACACCCCAGATGGACAGACAGACGTTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACACACACCCCAGATGGACAGACAGACGTTGA  600

seq1  ACTTTTGTTCCCAATTCTTTTTTTTTAAAAGATTTATTTATTTATTTATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTGTTCCCAATTCTTTTTTTTTAAAAGATTTATTTATTTATTTATT  650

seq1  ACATGTAAGTACACTGTAGCTGTCTTCAGACCCTCCAGAAGAGGGAGTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGTAAGTACACTGTAGCTGTCTTCAGACCCTCCAGAAGAGGGAGTCA  700

seq1  GATCTCATTACGGATGGTTGTGAGCCATCATGTGGTTGCTGGGATTTGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTCATTACGGATGGTTGTGAGCCATCATGTGGTTGCTGGGATTTGAA  750

seq1  CTTCGGACCTTCGGAAGAGCAGTCGGGTGCTCTTACCCACTGAGCCATCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCGGACCTTCGGAAGAGCAGTCGGGTGCTCTTACCCACTGAGCCATCT  800

seq1  CACCAGCCCCTGTTCCCAATTCTAAGAAGGGGCAAAGTGTCCATACTTTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAGCCCCTGTTCCCAATTCTAAGAAGGGGCAAAGTGTCCATACTTTG  850

seq1  GTCTTCGTTTTTCTTGCTTTTCATATTAGCAAATTGTATCTTATATCTTG  900
      |||||||||||||||||||||||||||||||||||||||| |||||| ||
seq2  GTCTTCGTTTTTCTTGCTTTTCATATTAGCAAATTGTATC-TATATC-TG  898

seq1  GGTATTCTAAGTTTCTGGGCTAATATCCACTTATCAGTGAGTACATATTG  950
      |||| |||||||||||||||| ||||||||||||||||||||||||| ||
seq2  GGTA-TCTAAGTTTCTGGGCT-ATATCCACTTATCAGTGAGTACATA-TG  945

seq1  TGTGAGTTATTTTGTGATTGGGTTACCTCACTTAGGTCCATCCATTTGCC  1000
      ||||||   | |||||||  || |||||||| ||||||||||||||||||
seq2  TGTGAG---TATTGTGAT--GGGTACCTCAC-TAGGTCCATCCATTTGCC  989

seq1  TAGGAATTACATAAATTCATTCTTTTTTTTTTTTTTTTCTTTTTTTTTGG  1050
       ||    |||||||| |||       | ||||||||||| |||||||  |
seq2  AAG---ATACATAAA-TCA-------TCTTTTTTTTTTCCTTTTTTT--G  1026

seq1  TTTTTCGAGACAGGGTTTCTCTGTATAGCCCTGGCT  1086
       |||||| ||||  ||||||||| |||| |||||||
seq2  GTTTTCG-GACA--GTTTCTCTG-ATAG-CCTGGCT  1057