BAC Information

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BAC

Clone NameB6Ng01-065N22
Chromosome1 (Build37)
Map Location 141,056,896 - 141,225,879
singlet/doubletdoublet
Overlap geneDennd1b, Crb1
Upstream genePtprc, LOC100042596, Atp6v1g3, LOC100042600, Nek7, LOC545363, LOC667745, Lhx9, 2310009B15Rik, 1700019P21Rik, LOC100042623
Downstream geneZbtb41, Aspm, F13b, Cfhr1, EG624286, EG214403, BC026782, LOC545399, EG545367, Cfh, Kcnt2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-065N22.bB6Ng01-065N22.g
ACCDH885220DH885221
length1,1271,038
definitionDH885220|Mus musculus domesticus DNA, BAC clone: B6Ng01-065N22, 5' end.DH885221|Mus musculus domesticus DNA, BAC clone: B6Ng01-065N22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(141,224,736 - 141,225,879)(141,056,896 - 141,057,942)
sequence
gaattctaaagataatttgttttattctggagagattgggagaagctatt
taaaatgtttcagcaaatattaacataatcatgtttgtatttttaaagat
ctcacattaagtggttttgagagacaggttgggtagggagacatgatggc
gaatgctgagggtcatgaaggaaataatagtcaatgagggtagggcctaa
tgatattggacaagtttcaagttttactgatagaatgttctccttcttaa
aggggagggatgacattttaactttgatatttatagaatccagtgacagt
tataaatagcatatgctgttggaacatttctactgcaacttagatcaaga
aaagagaacaaagtcacacttagtactattgctgagccactttggaatct
gccaatgttttaatacatggtttattatcctgggttagaatcacagtaat
aaagaatgtatgagcacaggcagcccttttctgggcctttaaagtttctt
tactgaccgaccagaacacaggactagtagctggttttgctaagacacca
aaccagtctgtctaagcttttaccactattctgtatgcagcctaactaaa
ctgttatgaaggaataaaataacgaagaaaaaaaaaaaccacattgacca
gtgcatttagtcttccaacaaaagtacagttaacaataattttgtcctaa
aaataacttatttgtttccacagacaacaaagtcacaagctgttgtaggc
agtgatcctcacaagcagcagctgccccactctgtgcgacttcccacaag
cacaccgagtgaatagcaattagagtagaggaggagaattattttgggta
acataacatttgacaagtgctttagtaaataaaatattgccaaacagcta
aatattttcactttgctaaacttttctggctttctgtgttggctttcctc
ataggcgtgaactgtgagttgggaattgatgaatgcagatccagccttgt
ttcccggtgccacatgtcagacgctccagggctacttctgtgactggcac
ctggattctttggaagcactgtgaacccacgtatgaatggaaagtcagct
gttctcctgagtctatgtgtggatgga
gaattcctggaagtagagtttgagtgttgttggctgctctttttgtgctg
tgaacagaacccaggtcgtcctcaagagcagcctgtgtaggtggtaggta
aaggagacaaggcacaagagctgacaaggaatgtgagatcactgtaggca
acagctggaggacttgtgtgtggtcagggccatatccaaatcactgctga
cagagccactgtgtacccctgctcaggactggccttatcaaaggcttcat
aagacctcagctttttacccagtaccaacaggaatcatcagctcagtcca
tttgatctcacagatcatgagacttgttagtctttctagtcccctaagtg
ccccaggaggctgttcagtcgtcaggcctcagcgccagtctcctgcctca
cagtgtcctgccttcctggagcactagcatctccatctcgctaggacagt
ccttgctttaaagtcgggctaaggcttgaccttataggcagtctttctct
ctcacagtttgtctggacccctcaggacactctcatgaagcatggcaata
atagaaatagtgcattagtggagtctccacacctgagacagagtcctagc
tctgtccctttcgcattcccacccaagtcactgcttgctaacatcgcact
catcatgcacagcatgggaaagtgctcagcacagttagtgtagagtaagc
ttgccaaggaaacctctagaactgaagaaaaccttctgtaaggctttaac
tgcgcttcagttgctccctgtaaacatcaaaaaggtattttaaagttctt
tgcaaataacaaaactactgtgcatgttcaaggcactgccgttttgtact
gtgatatttcatatgcacaaatgggtttatgcatagtatcagtgtttgct
gtagactttggatcagcaaaagtctttctggattttgattgcctcaactc
agatgggacaagtatcaacatgtgttcttacttttagaagctgagaagtt
gactcagtggttaggtggtgctgggtcagttccagctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_141224736_141225879
seq2: B6Ng01-065N22.b_52_1178 (reverse)

seq1  TCCATCCACACATAGACCTCCATGGAGACACGGCTGACTTTCACATTCAT  50
      |||||||||||||||| |||   ||||| || |||||||||| |||||||
seq2  TCCATCCACACATAGA-CTC--AGGAGA-ACAGCTGACTTTC-CATTCAT  45

seq1  TAACGCTGAGTTCACAGTGCTCTCCAAGGAATCCAGGTGCACAGTCACAG  100
        ||| || |||||||||||| ||||| |||||||||||| |||||||||
seq2  --ACG-TGGGTTCACAGTGCT-TCCAAAGAATCCAGGTGC-CAGTCACAG  90

seq1  GAGTAGCCCCCTGGAGCGTCCTGACATGTGGCACCGTGGAGACAAGGCTG  150
       |||||  ||||||||||| |||||||||||||||| ||| |||||||| 
seq2  AAGTAG--CCCTGGAGCGT-CTGACATGTGGCACCG-GGAAACAAGGCT-  135

seq1  GGATCTGCATTCATCAATTTCCAACTCACAGTTCACGCCTATGAGAAAAG  200
      ||||||||||||||||||| ||||||||||||||||||||||||| ||||
seq2  GGATCTGCATTCATCAATTCCCAACTCACAGTTCACGCCTATGAGGAAAG  185

seq1  CCAACACAGAAAGCCAGAAAAGTTTTAGCAAAGTGAAAATATTTTAGCTG  250
      |||||||||||||||||||||| |||||||||||||||||| ||||||||
seq2  CCAACACAGAAAGCCAGAAAAG-TTTAGCAAAGTGAAAATA-TTTAGCTG  233

seq1  TTTGGCAATATTTTATTTACTAAAGCACTTGTCAAATGTTATGTTACCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGCAATATTTTATTTACTAAAGCACTTGTCAAATGTTATGTTACCCA  283

seq1  AAATAATTCTCCTCCTCTACTCTAATTGCTATTCACTCGGTGTGCTTGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAATTCTCCTCCTCTACTCTAATTGCTATTCACTCGGTGTGCTTGTG  333

seq1  GGAAGTCGCACAGAGTGGGGCAGCTGCTGCTTGTGAGGATCACTGCCTAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGTCGCACAGAGTGGGGCAGCTGCTGCTTGTGAGGATCACTGCCTAC  383

seq1  AACAGCTTGTGACTTTGTTGTCTGTGGAAACAAATAAGTTATTTTTAGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGCTTGTGACTTTGTTGTCTGTGGAAACAAATAAGTTATTTTTAGGA  433

seq1  CAAAATTATTGTTAACTGTACTTTTGTTGGAAGACTAAATGCACTGGTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATTATTGTTAACTGTACTTTTGTTGGAAGACTAAATGCACTGGTCA  483

seq1  ATGTGGTTTTTTTTTTTCTTCGTTATTTTATTCCTTCATAACAGTTTAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGGTTTTTTTTTTTCTTCGTTATTTTATTCCTTCATAACAGTTTAGT  533

seq1  TAGGCTGCATACAGAATAGTGGTAAAAGCTTAGACAGACTGGTTTGGTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCTGCATACAGAATAGTGGTAAAAGCTTAGACAGACTGGTTTGGTGT  583

seq1  CTTAGCAAAACCAGCTACTAGTCCTGTGTTCTGGTCGGTCAGTAAAGAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGCAAAACCAGCTACTAGTCCTGTGTTCTGGTCGGTCAGTAAAGAAA  633

seq1  CTTTAAAGGCCCAGAAAAGGGCTGCCTGTGCTCATACATTCTTTATTACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAAAGGCCCAGAAAAGGGCTGCCTGTGCTCATACATTCTTTATTACT  683

seq1  GTGATTCTAACCCAGGATAATAAACCATGTATTAAAACATTGGCAGATTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATTCTAACCCAGGATAATAAACCATGTATTAAAACATTGGCAGATTC  733

seq1  CAAAGTGGCTCAGCAATAGTACTAAGTGTGACTTTGTTCTCTTTTCTTGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGTGGCTCAGCAATAGTACTAAGTGTGACTTTGTTCTCTTTTCTTGA  783

seq1  TCTAAGTTGCAGTAGAAATGTTCCAACAGCATATGCTATTTATAACTGTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAGTTGCAGTAGAAATGTTCCAACAGCATATGCTATTTATAACTGTC  833

seq1  ACTGGATTCTATAAATATCAAAGTTAAAATGTCATCCCTCCCCTTTAAGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGATTCTATAAATATCAAAGTTAAAATGTCATCCCTCCCCTTTAAGA  883

seq1  AGGAGAACATTCTATCAGTAAAACTTGAAACTTGTCCAATATCATTAGGC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGAACATTCTATCAGTAAAACTTGAAACTTGTCCAATATCATTAGGC  933

seq1  CCTACCCTCATTGACTATTATTTCCTTCATGACCCTCAGCATTCGCCATC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACCCTCATTGACTATTATTTCCTTCATGACCCTCAGCATTCGCCATC  983

seq1  ATGTCTCCCTACCCAACCTGTCTCTCAAAACCACTTAATGTGAGATCTTT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCTCCCTACCCAACCTGTCTCTCAAAACCACTTAATGTGAGATCTTT  1033

seq1  AAAAATACAAACATGATTATGTTAATATTTGCTGAAACATTTTAAATAGC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATACAAACATGATTATGTTAATATTTGCTGAAACATTTTAAATAGC  1083

seq1  TTCTCCCAATCTCTCCAGAATAAAACAAATTATCTTTAGAATTC  1144
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCCAATCTCTCCAGAATAAAACAAATTATCTTTAGAATTC  1127

seq1: chr1_141056896_141057942
seq2: B6Ng01-065N22.g_67_1104

seq1  GAATTCCTGGAAGTAGAGTTTGAGTGTTGTTGGCTGCTCTTTTTGTGCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGGAAGTAGAGTTTGAGTGTTGTTGGCTGCTCTTTTTGTGCTG  50

seq1  TGAACAGAACCCAGGTCGTCCTCAAGAGCAGCCTGTGTAGGTGGTAGGTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACAGAACCCAGGTCGTCCTCAAGAGCAGCCTGTGTAGGTGGTAGGTA  100

seq1  AAGGAGACAAGGCACAAGAGCTGACAAGGAATGTGAGATCACTGTAGGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGACAAGGCACAAGAGCTGACAAGGAATGTGAGATCACTGTAGGCA  150

seq1  ACAGCTGGAGGACTTGTGTGTGGTCAGGGCCATATCCAAATCACTGCTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCTGGAGGACTTGTGTGTGGTCAGGGCCATATCCAAATCACTGCTGA  200

seq1  CAGAGCCACTGTGTACCCCTGCTCAGGACTGGCCTTATCAAAGGCTTCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGCCACTGTGTACCCCTGCTCAGGACTGGCCTTATCAAAGGCTTCAT  250

seq1  AAGACCTCAGCTTTTTACCCAGTACCAACAGGAATCATCAGCTCAGTCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACCTCAGCTTTTTACCCAGTACCAACAGGAATCATCAGCTCAGTCCA  300

seq1  TTTGATCTCACAGATCATGAGACTTGTTAGTCTTTCTAGTCCCCTAAGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATCTCACAGATCATGAGACTTGTTAGTCTTTCTAGTCCCCTAAGTG  350

seq1  CCCCAGGAGGCTGTTCAGTCGTCAGGCCTCAGCGCCAGTCTCCTGCCTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAGGAGGCTGTTCAGTCGTCAGGCCTCAGCGCCAGTCTCCTGCCTCA  400

seq1  CAGTGTCCTGCCTTCCTGGAGCACTAGCATCTCCATCTCGCTAGGACAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGTCCTGCCTTCCTGGAGCACTAGCATCTCCATCTCGCTAGGACAGT  450

seq1  CCTTGCTTTAAAGTCGGGCTAAGGCTTGACCTTATAGGCAGTCTTTCTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGCTTTAAAGTCGGGCTAAGGCTTGACCTTATAGGCAGTCTTTCTCT  500

seq1  CTCACAGTTTGTCTGGACCCCTCAGGACACTCTCATGAAGCATGGCAATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACAGTTTGTCTGGACCCCTCAGGACACTCTCATGAAGCATGGCAATA  550

seq1  ATAGAAATAGTGCATTAGTGGAGTCTCCACACCTGAGACAGAGTCCTAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAAATAGTGCATTAGTGGAGTCTCCACACCTGAGACAGAGTCCTAGC  600

seq1  TCTGTCCCTTTCGCATTCCCACCCAAGTCACTGCTTGCTAACATCGCACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCCCTTTCGCATTCCCACCCAAGTCACTGCTTGCTAACATCGCACT  650

seq1  CATCATGCACAGCATGGGAAAGTGCTCAGCACAGTTAGTGTAGAGTAAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCATGCACAGCATGGGAAAGTGCTCAGCACAGTTAGTGTAGAGTAAGC  700

seq1  TTGCCAAGGAAACCTCTAGAACTGAAGAAAACCTTCTGTAAGGCTTTAAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCAAGGAAACCTCTAGAACTGAAGAAAACCTTCTGTAAGGCTTTAAC  750

seq1  TGCGCTTCAGTTGCTCCCTGTAAACATCAAAAAGGTATTTTAAAGTTCTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGCTTCAGTTGCTCCCTGTAAACATCAAAAAGGTATTTTAAAGTTCTT  800

seq1  TGCAAATAACAAAACTACTGTGCATGTTCAAGGCACTGCCGTTTTGTACT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAATAACAAAACTACTGTGCATGTTCAAGGCACTGCCGTTTTGTACT  850

seq1  GTGATATTTTCATATGCCACAAATGGGTTTTATGCATAGTATCAGGTGTT  900
      |||||| ||||||||| |||||||||| |||||||||||||||| |||||
seq2  GTGATA-TTTCATATG-CACAAATGGG-TTTATGCATAGTATCA-GTGTT  896

seq1  TGCTGTAGACTTTGGATCAGCAAAAAGTCTTTCTGGATTTTGATTGCCTC  950
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TGCTGTAGACTTTGGATCAGC-AAAAGTCTTTCTGGATTTTGATTGCCTC  945

seq1  AACTCCAAGATGGGAC-AGTATCAACATGTGTTCTTACTTTTAGAAGCTG  999
      |||||  ||||||||| |||||||||||||||||||||||||||||||||
seq2  AACTC--AGATGGGACAAGTATCAACATGTGTTCTTACTTTTAGAAGCTG  993

seq1  GAGAGATGACTCAGTGGTTTAGTGGTGCCTGGGTTCAGTTCCCAGCTC  1047
         || |||||||||||||  |||||| ||||| |||||| |||||||
seq2  AGAAGTTGACTCAGTGGTTAGGTGGTG-CTGGG-TCAGTT-CCAGCTC  1038