BAC Information

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BAC

Clone NameB6Ng01-066F09
Chromosome1 (Build37)
Map Location 188,394,065 - 188,580,664
singlet/doubletdoublet
Overlap geneTgfb2, Rrp15
Upstream geneLOC677785, Lyplal1
Downstream geneLOC666832, LOC100042375, D1Pas1, Spata17, Gpatch2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-066F09.bB6Ng01-066F09.g
ACCDH885541DH885542
length1,0211,112
definitionDH885541|Mus musculus domesticus DNA, BAC clone: B6Ng01-066F09, 5' end.DH885542|Mus musculus domesticus DNA, BAC clone: B6Ng01-066F09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(188,394,065 - 188,395,087)(188,579,534 - 188,580,664)
sequence
gaattcagctgcctgaccattctgggtgtaagtcgtccctgctgttggcg
gaaactgactcactcagcccagcctttcttccttacagagtaccagtcct
tcaaaggactgagtgagatcttcgagtctcctcttccttttcttttgaaa
gagggagggagggggacacagttcaagctccaggatcgtgcagtgtttct
aaacaccctatgctccattttgttctattctaaccaaagtgtatcaaatt
gtctgctaagtaaagtcccccaccccatcacaaagaagaggtatgaaaaa
gcaagaggaaattatcgagaatccgtagagtattcttttaaaatatcttg
ccaggccccattgtgacttggcagtcttggatggtaatgatgctacctag
cttgggcttcctttattttatctcatggcaggctgtattggccagttctt
atttactatttaccaaaaatattagcaacattggagcgtgtagtctcccc
tttgagttctttatatatctgccattctcctaatttactatgtattcaac
tctcattctctttttaagatgataatgttcaatatgagatagattatatt
gttagctataatatccctctcctttctggatgttgaggcagggttttacc
tataggccagtctggccttgaactcatgctcttccttcttcttctaccac
cctggggctgggattgcagggttgtgcctccctacctggcttgttttgaa
gtctactttggatgtgtcattggtactgtatgcacatgcacatgttaata
taagagtttaagtacatctgccatgacacacatgtggaagtccaggcctt
actttataccctgtctgagacagaatctcctactgcccactgctgtacat
ggcaactagctagcctgtgagcttctggggactctcctgtccccatcttc
cttccatcgacacaggagctctgaatcttaggtgtgtgtctcttgcagcc
tcagatggggtttgggggtgc
gaattcaaaacaggctcttaaaggaacctaagcatgcttaaaaaaatata
aggggacaaacactgtgaagtaaggaaaatcaataaacgaccaagctgag
aaatgtaaaaatgaaattaataattatgacaaaacccctggagctaaaaa
ccaagcaagtaaagtgaagactgcgtccaggaagaaaacatcatttagat
atttgcactttttgcactatatgctagaggtgggattctcccaccggcca
gttgccctcagtgaagattcaaaagtccagtctcactcctacccaggatt
tcaaacaatcttagaagtgcccataggtatataagaaatcagatggacat
taggaaaggtttccccaaggatggtgacattttgatgacaaatggggaga
actggggcaagaatgtatctttctggaaaggtaccctgcagaggacaatc
agcaaagagaaggtagcaaccagtgaaatgaaatggaggcatgactgaag
tgtgcgtcatgagagagcaacccaagaaaaggccaaagatctgcaagggg
gcgggctccagcgtgcctcagtctcagtagtatctgggtggaagacgaga
cagttcttcacggtggcgtctttccggtgccttagcatgttccacagcat
gcgtagtgagtacaacagcactttctcctggtagtgtgacagtctgaaat
ttctcttgctcctgcacttctgggtgaaacctgcagggtcttggaagtca
tgtaaggatttgaagagtgatgtataagggattactgtactttgcacaca
tttttttttttttaaagctcactatatccgtgtgtgcacaccgggtgaca
ctgaggttatcagctgctggagactatgaagtccgctggaacggttataa
aatttgaactgaggcagagtaaaacccggaaggaggtgctaatttcagat
ataatcaatgtttcatttgggcacgtctgctgattcttccttgactggac
ttgctctgattgtcgacaattactgagttttcatgttatctcggatcccc
gattctgaaactcctgtgcttactactaataaggtaatttctgctcttga
tttttttattaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_188394065_188395087
seq2: B6Ng01-066F09.b_50_1070

seq1  GAATTCAGCTGCCTGACCATTCTGGGTGTAAGTCGTCCCTGCTGTTGGCG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCTGCCTGACCATTCTGGGTGTAAGTCGTCCCTGCTGTTGGCG  50

seq1  GAAACTGACTCACTCAGCCCAGCCTTTCTTCCTTACAGAGTACCAGTCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACTGACTCACTCAGCCCAGCCTTTCTTCCTTACAGAGTACCAGTCCT  100

seq1  TCAAAGGACTGAGTGAGATCTTCGAGTCTCCTCTTCCTTTTCTTTTGAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGGACTGAGTGAGATCTTCGAGTCTCCTCTTCCTTTTCTTTTGAAA  150

seq1  GAGGGAGGGAGGGGGACACAGTTCAAGCTCCAGGATCGTGCAGTGTTTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGAGGGAGGGGGACACAGTTCAAGCTCCAGGATCGTGCAGTGTTTCT  200

seq1  AAACACCCTATGCTCCATTTTGTTCTATTCTAACCAAAGTGTATCAAATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACCCTATGCTCCATTTTGTTCTATTCTAACCAAAGTGTATCAAATT  250

seq1  GTCTGCTAAGTAAAGTCCCCCACCCCATCACAAAGAAGAGGTATGAAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGCTAAGTAAAGTCCCCCACCCCATCACAAAGAAGAGGTATGAAAAA  300

seq1  GCAAGAGGAAATTATCGAGAATCCGTAGAGTATTCTTTTAAAATATCTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGAGGAAATTATCGAGAATCCGTAGAGTATTCTTTTAAAATATCTTG  350

seq1  CCAGGCCCCATTGTGACTTGGCAGTCTTGGATGGTAATGATGCTACCTAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGCCCCATTGTGACTTGGCAGTCTTGGATGGTAATGATGCTACCTAG  400

seq1  CTTGGGCTTCCTTTATTTTATCTCATGGCAGGCTGTATTGGCCAGTTCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGGCTTCCTTTATTTTATCTCATGGCAGGCTGTATTGGCCAGTTCTT  450

seq1  ATTTACTATTTACCAAAAATATTAGCAACATTGGAGCGTGTAGTCTCCCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTACTATTTACCAAAAATATTAGCAACATTGGAGCGTGTAGTCTCCCC  500

seq1  TTTGAGTTCTTTATATATCTGCCATTCTCCTAATTTACTATGTATTCAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGTTCTTTATATATCTGCCATTCTCCTAATTTACTATGTATTCAAC  550

seq1  TCTCATTCTCTTTTTAAGATGATAATGTTCAATATGAGATAGATTATATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATTCTCTTTTTAAGATGATAATGTTCAATATGAGATAGATTATATT  600

seq1  GTTAGCTATAATATCCCTCTCCTTTCTGGATGTTGAGGCAGGGTTTTACC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGCTATAATATCCCTCTCCTTTCTGGATGTTGAGGCAGGGTTTTACC  650

seq1  TATAGGCCAGTCTGGCCTTGAACTCATGCTCTTCCTTCTTCTTCTACCAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGGCCAGTCTGGCCTTGAACTCATGCTCTTCCTTCTTCTTCTACCAC  700

seq1  CCTGGGGCTGGGATTGCAGGGTTGTGCCTCCCTACCTGGCTTGTTTTGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGGGCTGGGATTGCAGGGTTGTGCCTCCCTACCTGGCTTGTTTTGAA  750

seq1  GTCTACTTTGGATGTGTCATTGGTACTGTATGCACATGCACATGTTAATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTACTTTGGATGTGTCATTGGTACTGTATGCACATGCACATGTTAATA  800

seq1  TAAGAGTTTAAGTACATCTGCCATGACACACATGTGGAAGTCCAGGCCTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAGTTTAAGTACATCTGCCATGACACACATGTGGAAGTCCAGGCCTT  850

seq1  ACTTTATACCCTGTCTGAGACAGAATCTCCTACTGCCCACTGCTGTACAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTATACCCTGTCTGAGACAGAATCTCCTACTGCCCACTGCTGTACAT  900

seq1  GGCAAACTAGCTAGCCTGTGAGCTTCTGGGGACTCTCCTGTCCCCATCTT  950
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGC-AACTAGCTAGCCTGTGAGCTTCTGGGGACTCTCCTGTCCCCATCTT  949

seq1  CCTTCCATCGACACAGTAGCTCTGAAATCTCAGGTGTGTGTCTCTTGCAG  1000
      |||||||||||||||| ||||||| ||||| |||||||||||||||||||
seq2  CCTTCCATCGACACAGGAGCTCTG-AATCTTAGGTGTGTGTCTCTTGCAG  998

seq1  CCTCAGATGGGGTGTGGGGGTGC  1023
      ||||||||||||| |||||||||
seq2  CCTCAGATGGGGTTTGGGGGTGC  1021

seq1: chr1_188579534_188580664
seq2: B6Ng01-066F09.g_70_1181 (reverse)

seq1  TTAATAAAAAACAATTCAGAGACAGAAATTACCCTTTATTAGTAGTAAGC  50
      ||||||||||  |||  |||| |||||||||||  |||||||||||||||
seq2  TTAATAAAAA--AATCAAGAG-CAGAAATTACC--TTATTAGTAGTAAGC  45

seq1  ACAGGAGGTTTCAGAATCTGGGGTTCGAGTATAACCTGAAGAACTCAGTA  100
      |||||| ||||||||||| ||| | |||| ||||| |||| |||||||||
seq2  ACAGGA-GTTTCAGAATCGGGGATCCGAG-ATAACATGAA-AACTCAGTA  92

seq1  GTTGTCGACAATCAGGAGCCAAGTTCAAGGTCAGGGAAGAATCAGCAGAC  150
       ||||||||||||| ||| ||||| ||  |||| ||||||||||||||||
seq2  ATTGTCGACAATCA-GAG-CAAGTCCA--GTCAAGGAAGAATCAGCAGAC  138

seq1  GTGGCCCAAATGAAACATTGATTATATCTGAAATTAGCAACCTCCTTCCG  200
      || ||||||||||||||||||||||||||||||||||| |||||||||||
seq2  GT-GCCCAAATGAAACATTGATTATATCTGAAATTAGC-ACCTCCTTCCG  186

seq1  GGCTTTTACCTCTGCCTCAGTTCAAACTTTTATAACCGCTCCAGCGGACT  250
      || ||||| ||||||||||||||||| ||||||||||| |||||||||||
seq2  GG-TTTTA-CTCTGCCTCAGTTCAAA-TTTTATAACCGTTCCAGCGGACT  233

seq1  TCATAGTCTCCAGCAGCCTGATAACCTCAGTTGTCACCCGGTGTGCACAC  300
      |||||||||||||||| ||||||||||||| |||||||||||||||||||
seq2  TCATAGTCTCCAGCAG-CTGATAACCTCAG-TGTCACCCGGTGTGCACAC  281

seq1  ACGGATATAGTGAGCTTTAAAAAAAAAAAAATGTGTGCAAAGTACAGTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGATATAGTGAGCTTTAAAAAAAAAAAAATGTGTGCAAAGTACAGTAA  331

seq1  TCCCTTATACATCACTCTTCAAATCCTTACATGACTTCCAAGACCCTGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTATACATCACTCTTCAAATCCTTACATGACTTCCAAGACCCTGCA  381

seq1  GGTTTCACCCAGAAGTGCAGGAGCAAGAGAAATTTCAGACTGTCACACTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTCACCCAGAAGTGCAGGAGCAAGAGAAATTTCAGACTGTCACACTA  431

seq1  CCAGGAGAAAGTGCTGTTGTACTCACTACGCATGCTGTGGAACATGCTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGAGAAAGTGCTGTTGTACTCACTACGCATGCTGTGGAACATGCTAA  481

seq1  GGCACCGGAAAGACGCCACCGTGAAGAACTGTCTCGTCTTCCACCCAGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACCGGAAAGACGCCACCGTGAAGAACTGTCTCGTCTTCCACCCAGAT  531

seq1  ACTACTGAGACTGAGGCACGCTGGAGCCCGCCCCCTTGCAGATCTTTGGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACTGAGACTGAGGCACGCTGGAGCCCGCCCCCTTGCAGATCTTTGGC  581

seq1  CTTTTCTTGGGTTGCTCTCTCATGACGCACACTTCAGTCATGCCTCCATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCTTGGGTTGCTCTCTCATGACGCACACTTCAGTCATGCCTCCATT  631

seq1  TCATTTCACTGGTTGCTACCTTCTCTTTGCTGATTGTCCTCTGCAGGGTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTCACTGGTTGCTACCTTCTCTTTGCTGATTGTCCTCTGCAGGGTA  681

seq1  CCTTTCCAGAAAGATACATTCTTGCCCCAGTTCTCCCCATTTGTCATCAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCCAGAAAGATACATTCTTGCCCCAGTTCTCCCCATTTGTCATCAA  731

seq1  AATGTCACCATCCTTGGGGAAACCTTTCCTAATGTCCATCTGATTTCTTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTCACCATCCTTGGGGAAACCTTTCCTAATGTCCATCTGATTTCTTA  781

seq1  TATACCTATGGGCACTTCTAAGATTGTTTGAAATCCTGGGTAGGAGTGAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACCTATGGGCACTTCTAAGATTGTTTGAAATCCTGGGTAGGAGTGAG  831

seq1  ACTGGACTTTTGAATCTTCACTGAGGGCAACTGGCCGGTGGGAGAATCCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGACTTTTGAATCTTCACTGAGGGCAACTGGCCGGTGGGAGAATCCC  881

seq1  ACCTCTAGCATATAGTGCAAAAAGTGCAAATATCTAAATGATGTTTTCTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCTAGCATATAGTGCAAAAAGTGCAAATATCTAAATGATGTTTTCTT  931

seq1  CCTGGACGCAGTCTTCACTTTACTTGCTTGGTTTTTAGCTCCAGGGGTTT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGACGCAGTCTTCACTTTACTTGCTTGGTTTTTAGCTCCAGGGGTTT  981

seq1  TGTCATAATTATTAATTTCATTTTTACATTTCTCAGCTTGGTCGTTTATT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCATAATTATTAATTTCATTTTTACATTTCTCAGCTTGGTCGTTTATT  1031

seq1  GATTTTCCTTACTTCACAGTGTTTGTCCCCTTATATTTTTTTAAGCATGC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTCCTTACTTCACAGTGTTTGTCCCCTTATATTTTTTTAAGCATGC  1081

seq1  TTAGGTTCCTTTAAGAGCCTGTTTTGAATTC  1131
      |||||||||||||||||||||||||||||||
seq2  TTAGGTTCCTTTAAGAGCCTGTTTTGAATTC  1112