BAC Information

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BAC

Clone NameB6Ng01-066I01
Chromosome1 (Build37)
Map Location 89,879,337 - 90,017,788
singlet/doubletdoublet
Overlap geneUsp40, LOC545344, LOC677561, Ugt1a@, Ugt1a10, Ugt1a9, Ugt1a7c
Upstream gene4930429A22Rik, LOC208256, Akp5, Alpi, Akp3, Ecel1, 1700027L20Rik, Chrnd, Chrng, Eif4e2, Efhd1, Tnrc15, LOC100040600, LOC100040591, 3110079O15Rik, Ngef, LOC620454, Neu2, Inpp5d, Atg16l1, Sag
Downstream geneUgt1a6a, Ugt1a6b, Ugt1a5, Ugt1a2, Dnajb3, Ugt1a1, LOC100040766, 6430706D22Rik, LOC100038822, Trpm8, Spp2, Glrp1, Arl4c, LOC100040127, 2410088K16Rik, LOC208347, Sh3bp4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-066I01.bB6Ng01-066I01.g
ACCDH885662DH885663
length1,072871
definitionDH885662|Mus musculus domesticus DNA, BAC clone: B6Ng01-066I01, 5' end.DH885663|Mus musculus domesticus DNA, BAC clone: B6Ng01-066I01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(89,879,337 - 89,880,421)(90,016,918 - 90,017,788)
sequence
gaattctatgctcatcgacaggaacgttagattttccatgattacattaa
gggctttagttttagcttttgctgttttgtttttaattcttaagttgcaa
ctgctagcctaggtcactcatgcaggctcttttctgcatttagcatgttt
caatggtttagttttcactgagagttccattgatcatggtgtgtcataca
ctgcatctactattttcactcccagtttcaagtccatgataaaatttctg
aacatagcttgctatgttatctgaccctattcccaacactctgctgatac
tactgatgagcaaacacagcaacagaatggtctccagagcttaaggttag
ccatgttcttaagttatgccctcaggtttttttaaacctttgtttttatt
ttgggcattttgcctatatttatttatttatcatgtgtgtgcagtatctg
cagaggccataagagaacatataatcccctagaactatagagttatagac
agttgtgaactgggatgtgagtgctgggatctaaacctgggtcccctgga
aaagcagccagtattctacccactgggccaccactccagcccagccatta
tagctccctttcccctgactgacactaagcccctttagaatcaacccacc
tctagtcttctgtcactatatgccagttcttacaactacttaaaactggg
gggcagttatattggctagttctctgtaaactcaagggaatcatttggct
aggccagagcacaactcacatagcatgcttccaattcctctaggcgtcct
aggctctgatccttacttagcatggttaccagatgttatcattcactctt
acatatggataaatgatgtctttactataactagttataggtatacatat
tttgttaacttttatattgaatgcttatgaccaaattgatcagtattttc
cagaaatactatctaagcaccaatgtaactcaaactacttctcatctgca
gtagatgttgctgctccttttcttcaccagtgactggaactctgtatctt
ggattgcttcgctgtgaacaaa
gaattctatatctactataaagaaagaagttacatagtttgggggcatcc
agaggaaagaaaaagaacagggaggagggtattgaggattgcaaagtaca
ggatctcaggactggagaagagtaaaactctgtgaggagccagaggaaag
aaagtgagtgtgttggttgctggaaacattctggaaaacatgttcagagg
gccaagagctgcaacttgtgtccctaaggcctgcaagaggactgtgaccc
acaaaggttccacctactgcagcttcttcctcagcacggagggaattaca
agaggtggggtggcacagccccactgtgttcttaataggggtggaggggc
agctggagtggtcagcctgaacccatggttgtgcacaaagagtgaattaa
aaacactgcctgatctccagccatgtgaacgcaggaaacaaacacgtcca
ccagggggcgagcaacagtagcagagagaaggctcccagatctgaggatc
atccagaactgcagtgggaggaggatgccctgggaacagcaagagggctc
catttgcacttcattaccacagtagtgctttattcatatattaaccatta
aaaagaacagggaacaactctttactccttttaatattcctaagacacaa
aaggttaaaagaaaaaagtaaattagctaagttgggattaaacagatggc
tcaacacttgctgttcttgcagaggaactgagttgtgttctcaagaccct
catcaggtgtctccaactccaggggatgcatcaccctcttaggcctctgt
ggggcactgcaccacagcctctatccctctcctctctctctctctctctc
tattttctctgaacatcttct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_89879337_89880421
seq2: B6Ng01-066I01.b_41_1112

seq1  GAATTCTATGCTCATCGACAGGAACGTTAGATTTTCCATGATTACATTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATGCTCATCGACAGGAACGTTAGATTTTCCATGATTACATTAA  50

seq1  GGGCTTTAGTTTTAGCTTTTGCTGTTTTGTTTTTAATTCTTAAGTTGCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTTTAGTTTTAGCTTTTGCTGTTTTGTTTTTAATTCTTAAGTTGCAA  100

seq1  CTGCTAGCCTAGGTCACTCATGCAGGCTCTTTTCTGCATTTAGCATGTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTAGCCTAGGTCACTCATGCAGGCTCTTTTCTGCATTTAGCATGTTT  150

seq1  CAATGGTTTAGTTTTCACTGAGAGTTCCATTGATCATGGTGTGTCATACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGGTTTAGTTTTCACTGAGAGTTCCATTGATCATGGTGTGTCATACA  200

seq1  CTGCATCTACTATTTTCACTCCCAGTTTCAAGTCCATGATAAAATTTCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCATCTACTATTTTCACTCCCAGTTTCAAGTCCATGATAAAATTTCTG  250

seq1  AACATAGCTTGCTATGTTATCTGACCCTATTCCCAACACTCTGCTGATAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATAGCTTGCTATGTTATCTGACCCTATTCCCAACACTCTGCTGATAC  300

seq1  TACTGATGAGCAAACACAGCAACAGAATGGTCTCCAGAGCTTAAGGTTAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGATGAGCAAACACAGCAACAGAATGGTCTCCAGAGCTTAAGGTTAG  350

seq1  CCATGTTCTTAAGTTATGCCCTCAGGTTTTTTTAAACCTTTGTTTTTATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGTTCTTAAGTTATGCCCTCAGGTTTTTTTAAACCTTTGTTTTTATT  400

seq1  TTGGGCATTTTGCCTATATTTATTTATTTATCATGTGTGTGCAGTATCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGCATTTTGCCTATATTTATTTATTTATCATGTGTGTGCAGTATCTG  450

seq1  CAGAGGCCATAAGAGAACATATAATCCCCTAGAACTATAGAGTTATAGAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGCCATAAGAGAACATATAATCCCCTAGAACTATAGAGTTATAGAC  500

seq1  AGTTGTGAACTGGGATGTGAGTGCTGGGATCTAAACCTGGGTCCCCTGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGTGAACTGGGATGTGAGTGCTGGGATCTAAACCTGGGTCCCCTGGA  550

seq1  AAAGCAGCCAGTATTCTACCCACTGGGCCACCACTCCAGCCCAGCCATTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCAGCCAGTATTCTACCCACTGGGCCACCACTCCAGCCCAGCCATTA  600

seq1  TAGCTCCCTTTCCCCTGACTGACACTAAGCCCCTTTAGAATCAACCCACC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTCCCTTTCCCCTGACTGACACTAAGCCCCTTTAGAATCAACCCACC  650

seq1  TCTAGTCTTCTGTCACTATATGCCAGTTCTTACAACTACTTAAAACTGGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGTCTTCTGTCACTATATGCCAGTTCTTACAACTACTTAAAACTGGG  700

seq1  GGGCAGTTATATTGGCTAGTTCTCTGTAAACTCAAGGGAATCATTTGGCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAGTTATATTGGCTAGTTCTCTGTAAACTCAAGGGAATCATTTGGCT  750

seq1  AGGCCAGAGCACAACTCACATAGCATGCTTCCAATTCCTCTAGGCGTCCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCAGAGCACAACTCACATAGCATGCTTCCAATTCCTCTAGGCGTCCT  800

seq1  AGGCTCTGATCCTTACTTAGCATGGTTACCAGATGTTATCATTCACTCTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTCTGATCCTTACTTAGCATGGTTACCAGATGTTATCATTCACTCTT  850

seq1  ACATATGGATAAATGATGTCTTTACTATAACTAGTTAATAGGTATACATA  900
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  ACATATGGATAAATGATGTCTTTACTATAACTAGTT-ATAGGTATACATA  899

seq1  TTTTGGTAAACTTTTATATTGAATGCTTATGACCCAAATTGATCAGTATT  950
      |||| || |||||||||||||||||||||||| |||||||||||||||||
seq2  TTTT-GTTAACTTTTATATTGAATGCTTATGA-CCAAATTGATCAGTATT  947

seq1  TTCCAGAAATACTATCTAAGCACCAAATGTAACTCAAACTACCTTCTCAT  1000
      |||||||||||||||||||||||| |||||||||||||||| ||||||||
seq2  TTCCAGAAATACTATCTAAGCACC-AATGTAACTCAAACTA-CTTCTCAT  995

seq1  CTGCAGTAGAATGTTGGCTGCATCCATTTCCTTCAGCAAGTGACATGGAA  1050
      ||||||||| ||||| ||||| ||| ||| ||||| | |||||| |||||
seq2  CTGCAGTAG-ATGTT-GCTGC-TCC-TTTTCTTCA-CCAGTGAC-TGGAA  1039

seq1  CTCTGTATCTTGGATTGGCTCGAGCTGTGAACAAA  1085
      |||||||||||||||||  ||  ||||||||||||
seq2  CTCTGTATCTTGGATTGCTTC--GCTGTGAACAAA  1072

seq1: chr1_90016918_90017788
seq2: B6Ng01-066I01.g_69_939 (reverse)

seq1  AGAAGATGTTTCAGAG-AGAGAGAGAGAGAGAGAGAGAGAGGAGAGGAAT  49
      |||||||| ||||||| | | |||||||||||||||||||||||||| ||
seq2  AGAAGATG-TTCAGAGAAAATAGAGAGAGAGAGAGAGAGAGGAGAGGGAT  49

seq1  AGAGACTGTGGTGCAGTG-CCCACAGAGGCCTAAGAGGGCGATGCATCCC  98
      |||| ||||||||||||| |||||||||||||||||||| ||||||||||
seq2  AGAGGCTGTGGTGCAGTGCCCCACAGAGGCCTAAGAGGGTGATGCATCCC  99

seq1  CTGGAGTTGGAGACACCTGATGAGGGTCCTGAGAACACAACTCAGTTCCT  148
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  CTGGAGTTGGAGACACCTGATGAGGGTCTTGAGAACACAACTCAGTTCCT  149

seq1  CTGCAAGAACAGCAAGTGCTGAGCCATCTGTTTAATCCCAACTTAACTAA  198
      |||||||||||||||||| |||||||||||||||||||||||||| ||||
seq2  CTGCAAGAACAGCAAGTGTTGAGCCATCTGTTTAATCCCAACTTAGCTAA  199

seq1  TTTTACTTTCTTCTTTTAACCTTTTGTGTCTTAGGAATATTAAAAGGAGT  248
       |||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  -TTTACTTTTTTCTTTTAACCTTTTGTGTCTTAGGAATATTAAAAGGAGT  248

seq1  AAAGAGTTGTTCCCTGTTCTTTTTCCTGGTTAATATATGACTAAAGCACT  298
      ||||||||||||||||||||||||  |||||||||||||| |||||||||
seq2  AAAGAGTTGTTCCCTGTTCTTTTTAATGGTTAATATATGAATAAAGCACT  298

seq1  ACTGTGGTAATGAAGTGCAAATGGAGCCCTCTTGCTGTTCCCAGGGCATC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTGGTAATGAAGTGCAAATGGAGCCCTCTTGCTGTTCCCAGGGCATC  348

seq1  CTCCTCCCACTGCAGTTCTGGATGATCCTCAGATCTGGGAGCCTTCTCTC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTCCCACTGCAGTTCTGGATGATCCTCAGATCTGGGAGCCTTCTCTC  398

seq1  TGCTACTGTTGCTCGCCCCCTGGTGGACGTGTTTGTTTCCTGCGTTCACA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTACTGTTGCTCGCCCCCTGGTGGACGTGTTTGTTTCCTGCGTTCACA  448

seq1  TGGCTGGAGATCAGGCAGTGTTTTTAATTCACTCTTTGTGCACAACCATG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTGGAGATCAGGCAGTGTTTTTAATTCACTCTTTGTGCACAACCATG  498

seq1  GGTTCAGGCTGACCACTCCAGCTGCCCCTCCACCCCTATTAAGAACACAG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCAGGCTGACCACTCCAGCTGCCCCTCCACCCCTATTAAGAACACAG  548

seq1  TGGGGCTGTGCCACCCCACCTCTTGTAATTCCCTCCGTGCTGAGGAAGAA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGCTGTGCCACCCCACCTCTTGTAATTCCCTCCGTGCTGAGGAAGAA  598

seq1  GCTGCAGTAGGTGGAACCTTTGTGGGTCACAGTCCTCTTGCAGGCCTTAG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCAGTAGGTGGAACCTTTGTGGGTCACAGTCCTCTTGCAGGCCTTAG  648

seq1  GGACACAAGTTGCAGCTCTTGGCCCTCTGAACATGTTTTCCAGAATGTTT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACACAAGTTGCAGCTCTTGGCCCTCTGAACATGTTTTCCAGAATGTTT  698

seq1  CCAGCAACCAACACACTCACTTTCTTTCCTCTGGCTCCTCACAGAGTTTT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCAACCAACACACTCACTTTCTTTCCTCTGGCTCCTCACAGAGTTTT  748

seq1  ACTCTTCTCCAGTCCTGAGATCCTGTACTTTGCAATCCTCAATACCCTCC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTTCTCCAGTCCTGAGATCCTGTACTTTGCAATCCTCAATACCCTCC  798

seq1  TCCCTGTTCTTTTTCTTTCCTCTGGATGCCCCCAAACTATGTAACTTCTT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTGTTCTTTTTCTTTCCTCTGGATGCCCCCAAACTATGTAACTTCTT  848

seq1  TCTTTATAGTAGATATAGAATTC  871
      |||||||||||||||||||||||
seq2  TCTTTATAGTAGATATAGAATTC  871