BAC Information

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BAC

Clone NameB6Ng01-067C11
Chromosome1 (Build37)
Map Location 174,209,317 - 174,210,137
singlet/doubletsinglet
Overlap geneAtp1a2
Upstream genePpox, Usp21, Ufc1, EG622236, Dedd, Nit1, Pfdn2, 1190002J23Rik, Pvrl4, Arhgap30, Usf1, EG226654, F11r, Refbp2, Itlna, Cd244, Ly9, Slamf7, Cd48, LOC100041098, Slamf1, Cd84, Slamf6, Vangl2, LOC100040199, Nhlh1, Ncstn, Copa, Pex19, LOC100041219, Wdr42a, Pea15a, Casq1, Timm23p
Downstream geneIgsf8, Kcnj9, Kcnj10, Pigm, LOC665819, Slamf9, LOC100040274, Igsf9, Tagln2, Ccdc19, EG240916, Slamf8, Fcrl6, Dusp23, LOC100040320, Crp, LOC665875, Apcs, Olfr16, GA_x5J8B7W5Q1F-395172-396104, Olfr1408, GA_x5J8B7W5Q1F-344462-343889, Olfr1406, Olfr218, Olfr1405-ps1, Olfr1404, Fcer1a, Olfr1403
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-067C11.g
ACCDH886131
length821
definitionDH886131|Mus musculus domesticus DNA, BAC clone: B6Ng01-067C11, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcctatactcccccgggcctgtgcaaatctgtgtctaaaaaaaaag
aatcaaagaaagtgcctgggagcgactgaccccacccctgaacggtggaa
cggctcaactctgccctctggcctcaccatatctgtccccaggtcgatgc
agaggatggtcacagtgcccagtggaagggggatgttggcaatgatgaac
agcatgaagggggtgatctcagggatgttgctggtcagggtgtatgcgat
ggacttcttcaagttgtcaaagatcaggcggcctgtggagaggttctgag
ggcatcagggagatccaagggaccctccccaccctagcccctgagctgtg
gctggctgcttatttttctaagaggaaggtttaaagctgtagcagcgtgg
aatcttagagtgaaagtcagaggaaagagaaggtctgccttcagacatcc
tggatgtcatgtagcccacacagcctcctcaccctcctccacgcctgtca
caatggaggcaaagttgtcgtcgagaaggatcatgtcagccgcctgctta
gagacatcggagccggagatgcccatggcaatgccaatgtcagccttctt
cagcgcgggggagtcgttcatcccgtcaccagtcactgccacaatggctc
cctggggatggggggaagacaccaaaggtgcttgagaatcgagtccttgc
ccttctggctcctgacttggccctgtctctgcctctcactgtcttgctca
cctgcctctgacatcctttcccaatgataagtttctgctgagggggaggt
ccgggcaagacatctccgtgt
quality valuesOpen.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_174209317_174210137
seq2: B6Ng01-067C11.g_69_889

seq1  GAATTCCTATATTCCTCCAGGCCTGTGCTGATCTGCTGTCT-AGTGGTCA  49
      ||||||||||| ||| || |||||||||  ||||| ||||| |      |
seq2  GAATTCCTATACTCCCCCGGGCCTGTGCAAATCTG-TGTCTAAAAAAAAA  49

seq1  GGATCTAGTCAGATGCCTGGGTGCAGCTCACCCCACCCCTATTCTGTGGG  99
      | ||| |   |  |||||||| ||  || |||||||||||   | |||| 
seq2  GAATCAAAGAAAGTGCCTGGGAGCGACTGACCCCACCCCTGAACGGTGGA  99

seq1  ACTGCTCGACTCTGCCCTCTGGCCTCACCATATCTGTCCCCAGGTCGATG  149
      || |||| ||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGCTCAACTCTGCCCTCTGGCCTCACCATATCTGTCCCCAGGTCGATG  149

seq1  CAGAGGATGGTCACAGTGCCCAGTGGAAGGGGGATGTTGGCAATGATGAA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGATGGTCACAGTGCCCAGTGGAAGGGGGATGTTGGCAATGATGAA  199

seq1  CAGCAGGAAGGGGGTGATCTCAGGGATGTTGCTGGTCAGGGTGTATGCGA  249
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCATGAAGGGGGTGATCTCAGGGATGTTGCTGGTCAGGGTGTATGCGA  249

seq1  TGGACTTCTTCAAGTTGTCAAAGATCAGGCGGCCTGTGGAGAGGTTCTGA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACTTCTTCAAGTTGTCAAAGATCAGGCGGCCTGTGGAGAGGTTCTGA  299

seq1  GGGCATCAGGGAGATCCAAGGGACCCTCCCCACCCTAGCCCCTGAGCTGT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCATCAGGGAGATCCAAGGGACCCTCCCCACCCTAGCCCCTGAGCTGT  349

seq1  GGCTGGCTGCTTATTTTTCTAAGAGGAAGGTTTAAAGCTGTAGCAGCGTG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGGCTGCTTATTTTTCTAAGAGGAAGGTTTAAAGCTGTAGCAGCGTG  399

seq1  GAATCTTAGAGTGAAAGTCAGAGGAAAGAGAAGGTCTGCCTTCAGACATC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCTTAGAGTGAAAGTCAGAGGAAAGAGAAGGTCTGCCTTCAGACATC  449

seq1  CTGGATGTCATGTAGCCCACACAGCCTCCTCACCCTCCTCCACGCCTGTC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGATGTCATGTAGCCCACACAGCCTCCTCACCCTCCTCCACGCCTGTC  499

seq1  ACAATGGAGGCAAAGTTGTCGTCGAGAAGGATCATGTCAGCCGCCTGCTT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATGGAGGCAAAGTTGTCGTCGAGAAGGATCATGTCAGCCGCCTGCTT  549

seq1  AGAGACATCGGAGCCGGAGATGCCCATGGCAATGCCAATGTCAGCCTTCT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACATCGGAGCCGGAGATGCCCATGGCAATGCCAATGTCAGCCTTCT  599

seq1  TCAGCGCGGGGGAGTCGTTCACCCCGTCACCAGTCACTGCCACAATGGCT  649
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TCAGCGCGGGGGAGTCGTTCATCCCGTCACCAGTCACTGCCACAATGGCT  649

seq1  CCCT-GGGATGGGGGGAAGACACCAAAGGTGCTTGAGAAGCGAGTCCTTG  698
      |||| |||||||||||||||||||||||||||||||||| ||||||||||
seq2  CCCTGGGGATGGGGGGAAGACACCAAAGGTGCTTGAGAATCGAGTCCTTG  699

seq1  CCCTTCTGGCTCCTGACTTGGCCCTGTCTCTGCCTCTCACTGTCTTGCTC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTCTGGCTCCTGACTTGGCCCTGTCTCTGCCTCTCACTGTCTTGCTC  749

seq1  ACCTGCCTCTGACACCCTTCCACAATGATAAGCTTCTGCTGA-GGGGAGG  797
      |||||||||||||| |||| | |||||||||| ||||||||| |||||||
seq2  ACCTGCCTCTGACATCCTTTCCCAATGATAAGTTTCTGCTGAGGGGGAGG  799

seq1  TCCGGGCAAAGACAATCTCCGTGT  821
      ||||||| ||||| ||||||||||
seq2  TCCGGGC-AAGAC-ATCTCCGTGT  821