BAC Information

Click to search

BAC

Clone NameB6Ng01-067D18
Chromosome1 (Build37)
Map Location 160,868,402 - 161,014,464
singlet/doubletdoublet
Overlap genePappa2
Upstream gene6430517E21Rik, Astn1
Downstream gene4930562F17Rik, EG240853, LOC664972, Rfwd2, EG620484, Tnr, 4930523C07Rik, 4930562F07Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-067D18.bB6Ng01-067D18.g
ACCDH886188DH886189
length1,060572
definitionDH886188|Mus musculus domesticus DNA, BAC clone: B6Ng01-067D18, 5' end.DH886189|Mus musculus domesticus DNA, BAC clone: B6Ng01-067D18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(161,013,402 - 161,014,464)(160,868,402 - 160,868,973)
sequence
gaattcctcaggcaaatttaggcatcggtttaaagatatttttttattac
ctattttctccttcttattttctttcctcaattcctccctcccttcctct
tctcctttaccacaatactattacatttttgttatcttgttgtcttctac
tagcccagtgtccaggtcttctacttcagtgaataccctggcagtgaaca
ctccctgcagtctctgggctctgaggagacattaagtacatgttggttaa
ttgaaagaatgaatttgattatctttactatagcactttgaacaatgggg
acttttaaaataataatttctcaagaacatccagccacattctgccttta
ggtacttgagctttattattgcattggcgggctggtggacattatacatc
tgtttatgtttaaagaaagggactctagttttatgtcattgtacagactc
ttaaataaatatggcttaaaaaaagaatttctttcttgaaagaacctatt
gtctctatgatctgaattatccagctcccacttctcctttcttatagttc
cttttgcttatatatatggacaatacatgttgtttgtttgtttgtatttg
gcagaattttaggaagaagtggagacaggacccatttaggtgacaatgaa
gtgaagtaggatcctactccttttttgttttctgtttggtttctcattca
gttctgcaaagaaagcctgaataaagcaacctgaaagaccgattttgaca
gtatgggacatccaaaaggatgggcagggggattggctgtgaatatgcac
aaaagagtttggatcctgacccatctttcacccaacaactgagcaaacat
tcctttgggttcccaaatttactcatgaattttgtatcttggaaaagagc
ttattttgtgttggggaatgtctaggctgcttctctgttgctgtgataag
acaccttggccaacgtgccttagggaacgtagctgattgagggatattgt
cgagaacgtgagtcctgaccataatggcctgagcatggcacaaggtagca
gagctgagag
gaattcttgtctagtctaagccaacaatatttgtcgatgggatgaggaag
gcggatttatgagcagaagactcctcattcgtttctttttttttcttttt
gattcattccttgataactttacacaatatcttttttaaaaaaatcatcc
ttgcagaacaccccttctcgagtccaatttgggagagtgtgttttctcga
agccatcacattctcatggtaagcaaataacttttttctcataaatgaca
gactagttctcttgtccctgacataaactaataactaagcaatacagtgc
cttgtcaactgaatgatgaaacttcaaagaatgataataataggacagaa
taaagaatattaattaaaataacaattaaagcctgaagaaaaggcaatgg
cttcctacagtgcaactgcagcttggcagtcctgggttttcattgtcatt
gttgtttgggggcatttacttatttatttatttatttattttgctttgtt
ttctgttcttttgctgttgcttttcatatatatatatatacatatatata
tatatatatatatatgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_161013402_161014464
seq2: B6Ng01-067D18.b_42_1101 (reverse)

seq1  CTCTCAGCTTCTGCCTGCCTGGTGCCATGCTCAAGGCCATTATGGTCATG  50
      |||||||| |||| || ||| ||||||||||| ||||||||||||||| |
seq2  CTCTCAGC-TCTG-CTACCTTGTGCCATGCTC-AGGCCATTATGGTCA-G  46

seq1  GACTCACGTTCTCAGACAATATTCCCTCAATCAGCTTCCTTCCCTAAGCC  100
      ||||||||||||| ||||||| |||||||||||||| | ||||||||| |
seq2  GACTCACGTTCTC-GACAATA-TCCCTCAATCAGCTACGTTCCCTAAGGC  94

seq1  ACGTTGGCCATGGTGTCTTATCACAGCAACAGAGAAGCAGCCTAGACATT  150
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  ACGTTGGCCAAGGTGTCTTATCACAGCAACAGAGAAGCAGCCTAGACATT  144

seq1  CCCCAACACAAAATAAGCT-TTTTCCAAGATACAAAATTCATGAGTAAAT  199
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  CCCCAACACAAAATAAGCTCTTTTCCAAGATACAAAATTCATGAGTAAAT  194

seq1  TTGGGAAGCCAAAGGAATGTTTGCTCAGTTGTTGGGTGAAAGATGGGTCA  249
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGAACCCAAAGGAATGTTTGCTCAGTTGTTGGGTGAAAGATGGGTCA  244

seq1  GGATCCAAACTCTTTTGTGCATATTCACAGCCAATCCCCCTGCCCATCCT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCCAAACTCTTTTGTGCATATTCACAGCCAATCCCCCTGCCCATCCT  294

seq1  TTTGGATGTCCCATACTGTC-AAATCGGTC-TTCAGGTTGCTTTATTCAG  347
      |||||||||||||||||||| ||||||||| |||||||||||||||||||
seq2  TTTGGATGTCCCATACTGTCAAAATCGGTCTTTCAGGTTGCTTTATTCAG  344

seq1  GCTTTCTTTGCAGAACTGAATGAGAAACCAAACAGAAAACAAAAAAGGAG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTCTTTGCAGAACTGAATGAGAAACCAAACAGAAAACAAAAAAGGAG  394

seq1  TAGGATCCTACTTCACTTCATTGTCACCTAAATGGGTCCTGTCTCCACTT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGATCCTACTTCACTTCATTGTCACCTAAATGGGTCCTGTCTCCACTT  444

seq1  CTTCCTAAAATTCTGCCAAATACAAACAAACAAACAACATGTATTGTCCA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTAAAATTCTGCCAAATACAAACAAACAAACAACATGTATTGTCCA  494

seq1  TATATATAAGCAAAAGGAACTATAAGAAAGGAGAAGTGGGAGCTGGATAA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATAAGCAAAAGGAACTATAAGAAAGGAGAAGTGGGAGCTGGATAA  544

seq1  TTCAGATCATAGAGACAATAGGTTCTTTCAAGAAAGAAATTCTTTTTTTA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGATCATAGAGACAATAGGTTCTTTCAAGAAAGAAATTCTTTTTTTA  594

seq1  AGCCATATTTATTTAAGAGTCTGTACAATGACATAAAACTAGAGTCCCTT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCATATTTATTTAAGAGTCTGTACAATGACATAAAACTAGAGTCCCTT  644

seq1  TCTTTAAACATAAACAGATGTATAATGTCCACCAGCCCGCCAATGCAATA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTAAACATAAACAGATGTATAATGTCCACCAGCCCGCCAATGCAATA  694

seq1  ATAAAGCTCAAGTACCTAAAGGCAGAATGTGGCTGGATGTTCTTGAGAAA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGCTCAAGTACCTAAAGGCAGAATGTGGCTGGATGTTCTTGAGAAA  744

seq1  TTATTATTTTAAAAGTCCCCATTGTTCAAAGTGCTATAGTAAAGATAATC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTATTTTAAAAGTCCCCATTGTTCAAAGTGCTATAGTAAAGATAATC  794

seq1  AAATTCATTCTTTCAATTAACCAACATGTACTTAATGTCTCCTCAGAGCC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCATTCTTTCAATTAACCAACATGTACTTAATGTCTCCTCAGAGCC  844

seq1  CAGAGACTGCAGGGAGTGTTCACTGCCAGGGTATTCACTGAAGTAGAAGA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGACTGCAGGGAGTGTTCACTGCCAGGGTATTCACTGAAGTAGAAGA  894

seq1  CCTGGACACTGGGCTAGTAGAAGACAACAAGATAACAAAAATGTAATAGT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGACACTGGGCTAGTAGAAGACAACAAGATAACAAAAATGTAATAGT  944

seq1  ATTGTGGTAAAGGAGAAGAGGAAGGGAGGGAGGAATTGAGGAAAGAAAAT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTGGTAAAGGAGAAGAGGAAGGGAGGGAGGAATTGAGGAAAGAAAAT  994

seq1  AAGAAGGAGAAAATAGGTAATAAAAAAATATCTTTAAACCGATGCCTAAA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGGAGAAAATAGGTAATAAAAAAATATCTTTAAACCGATGCCTAAA  1044

seq1  TTTGCCTGAGGAATTC  1063
      ||||||||||||||||
seq2  TTTGCCTGAGGAATTC  1060

seq1: chr1_160868402_160868973
seq2: B6Ng01-067D18.g_68_639

seq1  GAATTCTTGTCTAGTCTAAGCCAACAATATTTGTCGATGGGATGAGGAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGTCTAGTCTAAGCCAACAATATTTGTCGATGGGATGAGGAAG  50

seq1  GCGGATTTATGAGCAGAAGACTCCTCATTCGTTTCTTTTTTTTTCTTTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGATTTATGAGCAGAAGACTCCTCATTCGTTTCTTTTTTTTTCTTTTT  100

seq1  GATTCATTCCTTGATAACTTTACACAATATCTTTTTTAAAAAAATCATCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCATTCCTTGATAACTTTACACAATATCTTTTTTAAAAAAATCATCC  150

seq1  TTGCAGAACACCCCTTCTCGAGTCCAATTTGGGAGAGTGTGTTTTCTCGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAGAACACCCCTTCTCGAGTCCAATTTGGGAGAGTGTGTTTTCTCGA  200

seq1  AGCCATCACATTCTCATGGTAAGCAAATAACTTTTTTCTCATAAATGACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCATCACATTCTCATGGTAAGCAAATAACTTTTTTCTCATAAATGACA  250

seq1  GACTAGTTCTCTTGTCCCTGACATAAACTAATAACTAAGCAATACAGTGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTAGTTCTCTTGTCCCTGACATAAACTAATAACTAAGCAATACAGTGC  300

seq1  CTTGTCAACTGAATGATGAAACTTCAAAGAATGATAATAATAGGACAGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTCAACTGAATGATGAAACTTCAAAGAATGATAATAATAGGACAGAA  350

seq1  TAAAGAATATTAATTAAAATAACAATTAAAGCCTGAAGAAAAGGCAATGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGAATATTAATTAAAATAACAATTAAAGCCTGAAGAAAAGGCAATGG  400

seq1  CTTCCTACAGTGCAACTGCAGCTTGGCAGTCCTGGGTTTTCATTGTCATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTACAGTGCAACTGCAGCTTGGCAGTCCTGGGTTTTCATTGTCATT  450

seq1  GTTGTTTGGGGGCATTTACTTATTTATTTATTTATTTATTTTGCTTTGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTTTGGGGGCATTTACTTATTTATTTATTTATTTATTTTGCTTTGTT  500

seq1  TTCTGTTCTTTTGCTGTTGCTTTTCATATATATATATATACATATATATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTTCTTTTGCTGTTGCTTTTCATATATATATATATACATATATATA  550

seq1  TATATATATATATATGTGTGTG  572
      ||||||||||||||||||||||
seq2  TATATATATATATATGTGTGTG  572