BAC Information

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BAC

Clone NameB6Ng01-067H22
Chromosome1 (Build37)
Map Location 48,046,167 - 48,187,098
singlet/doubletdoublet
Overlap genenone
Upstream geneEG227061, LOC666869
Downstream geneLOC546734, LOC674566, LOC100041936, LOC666903, LOC666909, 2900045O20Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-067H22.bB6Ng01-067H22.g
ACCDH886367DH886368
length1,1661,106
definitionDH886367|Mus musculus domesticus DNA, BAC clone: B6Ng01-067H22, 5' end.DH886368|Mus musculus domesticus DNA, BAC clone: B6Ng01-067H22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(48,185,907 - 48,187,098)(48,046,167 - 48,047,286)
sequence
gaattctcccatctgagggcaaccagaacttggggtgtttaatttagcat
ttgtatacccagcactaccagactaacctccaagcctggtgcagtactga
gatggaactcaggaaagatatcctataataaattcaggaaaaataatgat
gaacattctaatgtttctgaaatgaatatacagcttttatgctctactgc
tgtaggaacactgtggaaatgcgtctacctgacaagaagcaacatggcag
cagaggaaagagaggaacacatgggggaaaaggagcagctatgtataaaa
tggaagaacatcatttcacctaagcatatgagacttttgctatgttgaat
aatgtgaattctgttttagtcaaacagaattcatgagagttcaacaaccc
ataaagaattagcaaaatcatatgtgataataatgtttaatagtgtataa
ttactatagttatattttctttccctaatctacatttcaatacatttcat
atttaaggctcataaaatacaacctctcagtatacatgctttctaatgat
tattattaagtcatctaaatatagtcattttcattggcaaactttaacat
tcaggtgaaggggaaattgaatgtgtcaaatgttccacttagaaattagc
cactcacttcatacaatactttagttcctcttcatcccagttcttttatg
tagctatatctatattcttaattataggaataactattttgttaatttaa
gggatttttatagtaccaaaaagaaaatgaacattttgattaatatttcc
taaatgatgtgaaatgaaacatgaattctgatatatagtttactcttaaa
ttacaaaatatatttcacgattgaaatgtttcacaaattaattcttccag
caagatatgcatgcaaattatgaaagagagaggtggtgaggtgaaaacag
ggggaagaagacagcagaaagaatcatggaatacattaaatggcagagaa
cagaccagatgaaagctgagattccataaccataaaagagttaaaattat
ctgtataatgattacgttacagcatcatgagttaagatgctgagtctaat
agtcctcatctgagagggtatgactggctaataggaatctgaacgtataa
gattttaagtggatat
gaattcagaaactatgaacaattcgctctacatgaacaatgcaggtagta
agggattaaaaataaacaaaatgcatttcatatattgatacagtgcaaat
tgtcgcattccacaatataatggatttctgtgattgttcagtcttatttg
caaatgtcggtgaggtaaaaccatatcttcttgccttattgtgacttgaa
accatatctcattcttttgtcattttgtcttttttttttttccagagtgg
aggactgaacttgctaggcaagtgctctactactgagctaaattcccaac
accatattctcttgtcaatctagactccttgattagagaagtcctgaaaa
tggtatctgtatacctactctcttgactataaactcacatggtgcaagtg
agcacaaacagctgcaaactagcacaagtagattgagataatagttctga
cattccatccctcataacagtgaaggagagagtgtaaaatttttatactt
cttcatatgtaaaaattacatcagtcacattaataataccatttaatctg
aaaaattttgagtccaagatctgttactctagagaaaaatgggtggctgc
acagaattttgcaaggagcatgcatgtggcttctcttactgcagcatcct
ctcctactcatcaccaaaaccacactcgagttgcattcacttgaactgac
cattttatttcaaatctgtcagtagtagatttttaaatcatctctattaa
atgctagaattagtgctatcaagggctctagataatactcgggtgaaaaa
attgcattcacaagtggggaaccaattataatatcattttatgaaatgtc
tcctatacctcaaaactgtagactaatatgtgttaaattatgttactcct
gtggttgaaatacaattttatgtataagtgtttctgctcatgtattatga
gtcatttaaaactaaatttataagaactagtgatgaagataattgactgt
atgtacatttaaaaaatatttgtggtgtacttagtatcatatcacatatt
tttcatcatgatttgattacagcaatgctactaaatcattcatgtttttt
ttattg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_48185907_48187098
seq2: B6Ng01-067H22.b_48_1213 (reverse)

seq1  ATATCCACTTTAAAAATCTTATTACTGTCAGATTCTTTATTTAGCCCAGT  50
      ||||||||||  ||||||||| |||  |||||||| |   |||| |||||
seq2  ATATCCACTT--AAAATCTTA-TACGTTCAGATTCCT--ATTAG-CCAGT  44

seq1  CACTTAACACTCTCAGATGAGTGACTATTAGAACTTCAGCATCTTTAACC  100
      ||    || |||||||||||| ||||||||||   ||||||||||  | |
seq2  CA---TACCCTCTCAGATGAG-GACTATTAGA--CTCAGCATCTT--AAC  86

seq1  TCATGATGCTGTAACGTAAATCATTTATACCAGATTAATTTTTAATGTCT  150
      ||||||||||||||||| ||||| ||||| |||| |||||||  |  |||
seq2  TCATGATGCTGTAACGT-AATCA-TTATA-CAGA-TAATTTT--AACTCT  130

seq1  TTTATGTGTTATTGGAATCTCAGCTTTCATTCTGGTCTGTTCTCTGCCAT  200
      |||||| |||| ||||||||||||||||| ||||||||||||||||||||
seq2  TTTATG-GTTA-TGGAATCTCAGCTTTCA-TCTGGTCTGTTCTCTGCCAT  177

seq1  TTAATGTATTCCATGATTCCTTTCTGCTGTCTTCTTCCCCCCTGTTTTCA  250
      |||||||||||||||||| ||||||||||||||||| |||||||||||||
seq2  TTAATGTATTCCATGATT-CTTTCTGCTGTCTTCTT-CCCCCTGTTTTCA  225

seq1  CCTCACCACCTCTCTTCTTTCATAATTTGCATGCATATCTTGCTGGAAGA  300
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  CCTCACCACCTCTC-TCTTTCATAATTTGCATGCATATCTTGCTGGAAGA  274

seq1  ATTAATTTGTGAAACATTTCAATCCTGAAATATATTTTGTAATTTAAGAG  350
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  ATTAATTTGTGAAACATTTCAATCGTGAAATATATTTTGTAATTTAAGAG  324

seq1  TAAACTATATATCAGAATTCATGTTTCATTTCACATCATTTAGGAAATAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACTATATATCAGAATTCATGTTTCATTTCACATCATTTAGGAAATAT  374

seq1  TAATCAAAATGTTCATTTTCTTTTTGGTACTATAAAAATCCCTTAAATTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCAAAATGTTCATTTTCTTTTTGGTACTATAAAAATCCCTTAAATTA  424

seq1  ACAAAATAGTTATTCCTATAATTAAGAATATAGATATAGCTACATAAAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAATAGTTATTCCTATAATTAAGAATATAGATATAGCTACATAAAAG  474

seq1  AACTGGGATGAAGAGGAACTAAAGTATTGTATGAAGTGAGTGGCTAATTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGGGATGAAGAGGAACTAAAGTATTGTATGAAGTGAGTGGCTAATTT  524

seq1  CTAAGTGGAACATTTGACACATTCAATTTCCCCTTCACCTGAATGTTAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGTGGAACATTTGACACATTCAATTTCCCCTTCACCTGAATGTTAAA  574

seq1  GTTTGCCAATGAAAATGACTATATTTAGATGACTTAATAATAATCATTAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGCCAATGAAAATGACTATATTTAGATGACTTAATAATAATCATTAG  624

seq1  AAAGCATGTATACTGAGAGGTTGTATTTTATGAGCCTTAAATATGAAATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCATGTATACTGAGAGGTTGTATTTTATGAGCCTTAAATATGAAATG  674

seq1  TATTGAAATGTAGATTAGGGAAAGAAAATATAACTATAGTAATTATACAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGAAATGTAGATTAGGGAAAGAAAATATAACTATAGTAATTATACAC  724

seq1  TATTAAACATTATTATCACATATGATTTTGCTAATTCTTTATGGGTTGTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAAACATTATTATCACATATGATTTTGCTAATTCTTTATGGGTTGTT  774

seq1  GAACTCTCATGAATTCTGTTTGACTAAAACAGAATTCACATTATTCAACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTCTCATGAATTCTGTTTGACTAAAACAGAATTCACATTATTCAACA  824

seq1  TAGCAAAAGTCTCATATGCTTAGGTGAAATGATGTTCTTCCATTTTATAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAAAAGTCTCATATGCTTAGGTGAAATGATGTTCTTCCATTTTATAC  874

seq1  ATAGCTGCTCCTTTTCCCCCATGTGTTCCTCTCTTTCCTCTGCTGCCATG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCTGCTCCTTTTCCCCCATGTGTTCCTCTCTTTCCTCTGCTGCCATG  924

seq1  TTGCTTCTTGTCAGGTAGACGCATTTCCACAGTGTTCCTACAGCAGTAGA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTCTTGTCAGGTAGACGCATTTCCACAGTGTTCCTACAGCAGTAGA  974

seq1  GCATAAAAGCTGTATATTCATTTCAGAAACATTAGAATGTTCATCATTAT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATAAAAGCTGTATATTCATTTCAGAAACATTAGAATGTTCATCATTAT  1024

seq1  TTTTCCTGAATTTATTATAGGATATCTTTCCTGAGTTCCATCTCAGTACT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCTGAATTTATTATAGGATATCTTTCCTGAGTTCCATCTCAGTACT  1074

seq1  GCACCAGGCTTGGAGGTTAGTCTGGTAGTGCTGGGTATACAAATGCTAAA  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCAGGCTTGGAGGTTAGTCTGGTAGTGCTGGGTATACAAATGCTAAA  1124

seq1  TTAAACACCCCAAGTTCTGGTTGCCCTCAGATGGGAGAATTC  1192
      ||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAACACCCCAAGTTCTGGTTGCCCTCAGATGGGAGAATTC  1166

seq1: chr1_48046167_48047286
seq2: B6Ng01-067H22.g_68_1173

seq1  GAATTCAGAAACTATGAACAATTCGCTCTACATGAACAATGCAGGTAGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAAACTATGAACAATTCGCTCTACATGAACAATGCAGGTAGTA  50

seq1  AGGGATTAAAAATAAACAAAATGCATTTCATATATTGATACAGTGCAAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGATTAAAAATAAACAAAATGCATTTCATATATTGATACAGTGCAAAT  100

seq1  TGTCGCATTCCACAATATAATGGATTTCTGTGATTGTTCAGTCTTATTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCGCATTCCACAATATAATGGATTTCTGTGATTGTTCAGTCTTATTTG  150

seq1  CAAATGTCGGTGAGGTAAAACCATATCTTCTTGCCTTATTGTGACTTGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGTCGGTGAGGTAAAACCATATCTTCTTGCCTTATTGTGACTTGAA  200

seq1  ACCATATCTCATTCTTTTGTCATTTTGTCTTTTTTTTTTTTCCAGAGTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATATCTCATTCTTTTGTCATTTTGTCTTTTTTTTTTTTCCAGAGTGG  250

seq1  AGGACTGAACTTGCTAGGCAAGTGCTCTACTACTGAGCTAAATTCCCAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACTGAACTTGCTAGGCAAGTGCTCTACTACTGAGCTAAATTCCCAAC  300

seq1  ACCATATTCTCTTGTCAATCTAGACTCCTTGATTAGAGAAGTCCTGAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATATTCTCTTGTCAATCTAGACTCCTTGATTAGAGAAGTCCTGAAAA  350

seq1  TGGTATCTGTATACCTACTCTCTTGACTATAAACTCACATGGTGCAAGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTATCTGTATACCTACTCTCTTGACTATAAACTCACATGGTGCAAGTG  400

seq1  AGCACAAACAGCTGCAAACTAGCACAAGTAGATTGAGATAATAGTTCTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACAAACAGCTGCAAACTAGCACAAGTAGATTGAGATAATAGTTCTGA  450

seq1  CATTCCATCCCTCATAACAGTGAAGGAGAGAGTGTAAAATTTTTATACTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCCATCCCTCATAACAGTGAAGGAGAGAGTGTAAAATTTTTATACTT  500

seq1  CTTCATATGTAAAAATTACATCAGTCACATTAATAATACCATTTAATCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCATATGTAAAAATTACATCAGTCACATTAATAATACCATTTAATCTG  550

seq1  AAAAATTTTGAGTCCAAGATCTGTTACTCTAGAGAAAAATGGGTGGCTGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATTTTGAGTCCAAGATCTGTTACTCTAGAGAAAAATGGGTGGCTGC  600

seq1  ACAGAATTTTGCAAGGAGCATGCATGTGGCTTCTCTTACTGCAGCATCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAATTTTGCAAGGAGCATGCATGTGGCTTCTCTTACTGCAGCATCCT  650

seq1  CTCCTACTCATCACCAAAACCACACTCGAGTTGCATTCACTTGAACTGAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTACTCATCACCAAAACCACACTCGAGTTGCATTCACTTGAACTGAC  700

seq1  CATTTTATTTCAAATCTGTCAGTAGTAGATTTTTAAATCATCTCTATTAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTATTTCAAATCTGTCAGTAGTAGATTTTTAAATCATCTCTATTAA  750

seq1  ATGCTAGAATTAGTGCTATCAAGGGCTCTAGATAATACTCGGGTGAAAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTAGAATTAGTGCTATCAAGGGCTCTAGATAATACTCGGGTGAAAAA  800

seq1  ATTGCATTCACAAGTGGGGAACCAATTATAATATCATTTTATGAAATGTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCATTCACAAGTGGGGAACCAATTATAATATCATTTTATGAAATGTC  850

seq1  TCCTATACCTCAAAACTGTAGACTAATATGTGTTAAATTATGTTACTCCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTATACCTCAAAACTGTAGACTAATATGTGTTAAATTATGTTACTCCT  900

seq1  GTGGTTGAAATACAATTTTATGTATAAGTGTTTCTGCTCATGTATTATGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTTGAAATACAATTTTATGTATAAGTGTTTCTGCTCATGTATTATGA  950

seq1  GTCATTTAAAAACTAAATTTATAAGAACTAGTGATGAAAGATAATTGACT  1000
      ||||||| |||||||||||||||||||||||||||| |||||||||||||
seq2  GTCATTT-AAAACTAAATTTATAAGAACTAGTGATG-AAGATAATTGACT  998

seq1  GTAATTGTCACAATTTAAAAAATATTTGTGGTGTACTTAGTATCATATCA  1050
      |||  ||| || ||||||||||||||||||||||||||||||||||||||
seq2  GTA--TGT-AC-ATTTAAAAAATATTTGTGGTGTACTTAGTATCATATCA  1044

seq1  CATATTTTTCATCATGAATATGATTTTAACAAGCAAATGCTACATAAAAT  1100
      |||||||||||||||| || |||||   || ||| ||||||||   ||||
seq2  CATATTTTTCATCATG-ATTTGATT---AC-AGC-AATGCTAC--TAAAT  1086

seq1  CATTCATGTTTTTATTATTG  1120
      ||||||||||||| ||||||
seq2  CATTCATGTTTTTTTTATTG  1106