BAC Information

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BAC

Clone NameB6Ng01-067I11
Chromosome1 (Build37)
Map Location 162,717,475 - 162,718,604
singlet/doubletsinglet
Overlap geneRabgap1l
Upstream geneTnr, 4930523C07Rik, 4930562F07Rik, Tnn, Mrps14, Cacybp, Gpr52
Downstream geneEG620750, Rc3h1, Serpinc1, Zbtb37, Gas5, Dars2, Cenpl, Klhl20, Ankrd45, 4930469G21Rik, EG665117, EG640200, EG620839, Prdx6, Tnfsf4, Tnfsf18, EG435650, LOC100039623, LOC269134, Fasl
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-067I11.bB6Ng01-067I11.g
ACCDH886389DH886390
length1,1151,177
definitionDH886389|Mus musculus domesticus DNA, BAC clone: B6Ng01-067I11, 5' end.DH886390|Mus musculus domesticus DNA, BAC clone: B6Ng01-067I11, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcttagtaatagaagttccattggaagatgcaagcttgtgttaaga
attttggggaaattaggaataagatatttgctttttttaattgcactgtt
tctaaaccacatacctccttcccatagtttgtcttacagagatatcatta
ggtgtcttagctgtcttgttactttctgttttgaaaggagatatgaattg
ttatgagactatagccaagaataagatttgcatacatagatactggagat
cattgtactgaacatttagtaaactgttttgactgtactccactggatga
aatactgaatatcttcttcatgttctctccctctccctccccctctctct
tttgaaataatagttttgtgaaatactctttatcttttcaggactgtgct
gattggctgctgacttggaacagaaatttcacatatctcgttctacctag
ctctgtgttcagtgatattgttatagtgttgtttgagtggtcatagcagg
attatttataccagggacaaccagaaaatagaataatttgagctttgtag
ccagttgttaaatgtaaagcacattactggctataaacactttgaaatat
tcttttcatgtcatttatgagaagatgtttccaattaattttatactcag
gtaaagattaccagtctcctttaaaacaagcaatacccccacgaacatcc
aaaacaaatgaacagacacaaacagacagacatacaaactagttgagcat
acttttctaacctgcagatgaatatacaaaaatctaaagtccaaaatcat
atgggtagttgttggcaaagtcagggttctatattggatctcactatttc
tgtctttgtctgcctcatagagacaaactttcacatagcctcactcacct
ctcaagtgctaagatcacagacacgcatcataccctacctggttagcagt
gggcttctgtcctttcctaacccaagctgtcattaattcagttctggcat
cggttaagcagtctgagagagatgaatgaggcatgttcttggaccttgaa
gccttctgctatatggagataatatgggaacacgataacacttgctaaag
aatgagtggtaaaga
gaattctcacctgaggaataccaaatggctgagaagcacctgaaaaaatg
ttcagcatccttaatcatcagagaaatgcaaatcaaaacaaccctgagat
tccatctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtgaagaaagaggaacactcctccattgttggag
ggattgcaagcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtactactggaggatcccgcaatacctctcctgggc
atatatccagaagatgtcccaaccagtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacccagat
gcccctcaacagaggaatagatacaaaaaatgtggtacatttacacaatg
gagtactactcagctattaaaaggaatgaatctatgaaattcctaggcaa
atggttggacctggagggaatcatcctgagtgaggtaacacaatcacaaa
agaactcaaatgatatgtactcactgataagtggatattagcctagaaac
ttaatatacccgagatataagatacaatttgcaaaacacatgaaactcaa
gaagaacgaagaccaaagtgtggacactttgccccttcttagaattggaa
acaatcacccatggaaggagttacagagacaaagtttggagctgagacaa
aaggatggaccataagagactgccatatccagggatctgtcccataatta
gcctccaaatgatgacaccattgcatatactagcaagattttgctgaaag
gaccctgatatagctgtctcttgtgagactaggccggggcctagcaaaca
cataagtaagtggatgctcacagtcagctttggatggatcacagggtccc
caatggaggagctagagaagtatccaggagctaaagggatctgcaaccct
atagtggacacatttgactaccagtaccccggagctcttgactctagatg
catatatatcaaaagatggcctattcggccatactggaagaagggccatt
gaccccaaggtttattgcccgttcagggaacgccctggccaaaagtgaat
ggggtgcttggggggaggttggggagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_162717475_162718604
seq2: B6Ng01-067I11.b_50_1164 (reverse)

seq1  TCTTTACCACTCAATTCTTTCTGCCATGTGTTATCTGTGTTCCCATATTT  50
      |||||||||||| ||||||  |  || |||||||| ||||||||||||| 
seq2  TCTTTACCACTC-ATTCTT--TAGCAAGTGTTATC-GTGTTCCCATATT-  45

seq1  AATCTTCCATATAAGCAAGAAGGCTTCAAGGTCAAAGAACATGCCTCATT  100
       ||| ||||||| ||| |||||||||||||||| ||||||||||||||||
seq2  -ATC-TCCATAT-AGC-AGAAGGCTTCAAGGTCCAAGAACATGCCTCATT  91

seq1  CATCTCTACTCAGACTGCTTAACCGAATGCCAGAACTGAATTAAATGAAC  150
      ||||||| ||||||||||||||||| |||||||||||||||| |||| ||
seq2  CATCTCT-CTCAGACTGCTTAACCG-ATGCCAGAACTGAATT-AATG-AC  137

seq1  AGCTTGGGTTAGGAAAGGACAGAAGCCCACTGGCTAACCAGGTAGGGTAT  200
      ||||||||||||||||||||||||||||||| ||||||||||||||||| 
seq2  AGCTTGGGTTAGGAAAGGACAGAAGCCCACT-GCTAACCAGGTAGGGTA-  185

seq1  TGATGCGTGTCTGTGATCTTAGCACTTGAGAGGTGAGTGAGGCTATGTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGCGTGTCTGTGATCTTAGCACTTGAGAGGTGAGTGAGGCTATGTGA  235

seq1  AAGTTTGTCTCTATGAGGCAGACAAAGACAGAAATAGTGAGATCCAATAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTGTCTCTATGAGGCAGACAAAGACAGAAATAGTGAGATCCAATAT  285

seq1  AGAACCCTGACTTTGCCAACAACTACCCATATGATTTTGGACTTTAGATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACCCTGACTTTGCCAACAACTACCCATATGATTTTGGACTTTAGATT  335

seq1  TTTGTATATTCATCTGCAGGTTAGAAAAGTATGCTCAACTAGTTTGTATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTATATTCATCTGCAGGTTAGAAAAGTATGCTCAACTAGTTTGTATG  385

seq1  TCTGTCTGTTTGTGTCTGTTCATTTGTTTTGGATGTTCGTGGGGGTATTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCTGTTTGTGTCTGTTCATTTGTTTTGGATGTTCGTGGGGGTATTG  435

seq1  CTTGTTTTAAAGGAGACTGGTAATCTTTACCTGAGTATAAAATTAATTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTTTTAAAGGAGACTGGTAATCTTTACCTGAGTATAAAATTAATTGG  485

seq1  AAACATCTTCTCATAAATGACATGAAAAGAATATTTCAAAGTGTTTATAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATCTTCTCATAAATGACATGAAAAGAATATTTCAAAGTGTTTATAG  535

seq1  CCAGTAATGTGCTTTACATTTAACAACTGGCTACAAAGCTCAAATTATTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTAATGTGCTTTACATTTAACAACTGGCTACAAAGCTCAAATTATTC  585

seq1  TATTTTCTGGTTGTCCCTGGTATAAATAATCCTGCTATGACCACTCAAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTCTGGTTGTCCCTGGTATAAATAATCCTGCTATGACCACTCAAAC  635

seq1  AACACTATAACAATATCACTGAACACAGAGCTAGGTAGAACGAGATATGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACTATAACAATATCACTGAACACAGAGCTAGGTAGAACGAGATATGT  685

seq1  GAAATTTCTGTTCCAAGTCAGCAGCCAATCAGCACAGTCCTGAAAAGATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTTCTGTTCCAAGTCAGCAGCCAATCAGCACAGTCCTGAAAAGATA  735

seq1  AAGAGTATTTCACAAAACTATTATTTCAAAAGAGAGAGGGGGAGGGAGAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGTATTTCACAAAACTATTATTTCAAAAGAGAGAGGGGGAGGGAGAG  785

seq1  GGAGAGAACATGAAGAAGATATTCAGTATTTCATCCAGTGGAGTACAGTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGAACATGAAGAAGATATTCAGTATTTCATCCAGTGGAGTACAGTC  835

seq1  AAAACAGTTTACTAAATGTTCAGTACAATGATCTCCAGTATCTATGTATG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAGTTTACTAAATGTTCAGTACAATGATCTCCAGTATCTATGTATG  885

seq1  CAAATCTTATTCTTGGCTATAGTCTCATAACAATTCATATCTCCTTTCAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATCTTATTCTTGGCTATAGTCTCATAACAATTCATATCTCCTTTCAA  935

seq1  AACAGAAAGTAACAAGACAGCTAAGACACCTAATGATATCTCTGTAAGAC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGAAAGTAACAAGACAGCTAAGACACCTAATGATATCTCTGTAAGAC  985

seq1  AAACTATGGGAAGGAGGTATGTGGTTTAGAAACAGTGCAATTAAAAAAAG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTATGGGAAGGAGGTATGTGGTTTAGAAACAGTGCAATTAAAAAAAG  1035

seq1  CAAATATCTTATTCCTAATTTCCCCAAAATTCTTAACACAAGCTTGCATC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATATCTTATTCCTAATTTCCCCAAAATTCTTAACACAAGCTTGCATC  1085

seq1  TTCCAATGGAACTTCTATTACTAAGAATTC  1130
      ||||||||||||||||||||||||||||||
seq2  TTCCAATGGAACTTCTATTACTAAGAATTC  1115