BAC Information

Click to search

BAC

Clone NameB6Ng01-067N02
Chromosome1 (Build37)
Map Location 165,252,668 - 165,422,839
singlet/doubletdoublet
Overlap geneScyl1bp1
Upstream geneDnm3, 5630401D24Rik, Vamp4, LOC435651, Myoc, Bat2d, Fmo4, Fmo1, Fmo2, Fmo6, Fmo3, 4921528O07Rik, Prrx1, LOC100039597
Downstream geneLOC665237, Gm207, LOC100039626, Kifap3, Scyl3, BC055324, 2810422O20Rik, Sele, Sell, Selp, F5, Slc19a2, 4930455F23Rik, Blzf1, Nme7, Atp1b1, LOC100040065
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-067N02.bB6Ng01-067N02.g
ACCDH886584DH886585
length7371,111
definitionDH886584|Mus musculus domesticus DNA, BAC clone: B6Ng01-067N02, 5' end.DH886585|Mus musculus domesticus DNA, BAC clone: B6Ng01-067N02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(165,422,103 - 165,422,839)(165,252,668 - 165,253,786)
sequence
gaattcctggatgatttagaaaatgcaatatgcataacaggtacttaatg
tccaaatgctaagggtccacacaaagatagtctaagaagcttaaagttaa
tctcaacatcttagagatgactgatttttattatcattcctattattctt
gattataccgtttatccatctacctttcctcttttgctagggacagagat
caaccagaaatagcttgtgcaaagtgggagttcttcatttctaagtcttc
gttcacaaatgcttgaacggtattgttcaagttgaaaagagagattcaga
agtgagagccacagagccttcattccaagatacaatctcacaagatctct
tctgtgtgcttacacaacttcattctgcaagcacattctttccacatgtc
tgctaccagacagaggttcatatcttcctgtcttgggaacataagggaat
atggtggctttgagaaagaattacgacgagctttccttaggttgtggacc
agtctttgcccattcactgtaaccaatgaaatataaccaactctgattgt
atagatttgaggcacccaccttttaatcttgcagctaggggaaaaatggc
tttgatatgggggaagaatagaatggttgatattgcaaggaaagcaataa
ccctcatagttcattaactgttgagtgacaggaaacagggctcaacctgg
cgacatgcagaatgaagaggaatgggggaggggatgg
gaattcttagaaattaagctattcatttccacaaactgatcatcaaggaa
gaaattaaaatgcaaattaaaagtaatttgggccatatatcatatcctat
atattcaactcatatttttaaaatatgattaatggggatttttatactct
taagacttttttaaaagaagaactaaaacctatttgtttagttcacataa
aggtaaaagttgatatttcagcaaagttaaggctgaaagtgaaagcacat
gcctttaaccccagcacttagaggacgaggtaggtggagttctatgagtg
tgaaagtctccccaccaagagatcttcagactcaactggaatgaaattga
atttttccaaatattaaaaaaaacaacagtaacatcataaaacttagtga
agaacaaagaggaaatgcttctcaactttatatgagaacactgtgatcct
aacaacactaccaaaactggagaagaaaaataatcacaaagaagaaaaat
tgcatgctaatctttgtaagtggacaaaacttctacacaaaaattttgga
aaaatcaagcaagtgagatacaaggaaccaaacacttcacaaccaagctg
actttcttgtgggaatgcaaggtaggtcttatattataaaataaactaat
gggaatttaagcataaggacttgctggtaaaatgtcaaagtatttctctt
aaagttttggatgaggaacctacaactaatacttctatataatctgcctg
aaggcagagggtgtgcaacaaagatagagactatgttggacaggaaaatg
gctttctttgtgtgaaaaaagagcagagtaatgcatctattctgaaagaa
acatccatataccataattcagtcttcagaatggttagctaaactgttac
atttagggattcagaacaataataattccattctaatgccctgagaacac
tcatgccctgccagtaaataagtccacctaactttaaatctcattaattg
ttgtggacatatgcacagctacactttgaaaaagtggataacattctaca
gttcaaataatactatgaaccttatttcatttctagttattcactaaggg
catgtggctta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_165422103_165422839
seq2: B6Ng01-067N02.b_46_782 (reverse)

seq1  CCATCCCCTCCCCCATTCCTCTTCATTCTGCATGTCGCCAGGTTGAGCCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCCCCTCCCCCATTCCTCTTCATTCTGCATGTCGCCAGGTTGAGCCC  50

seq1  TGTTTCCTGTCACTCAACAGTTAATGAACTATGAGGGTTATTGCTTTCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCCTGTCACTCAACAGTTAATGAACTATGAGGGTTATTGCTTTCCT  100

seq1  TGCAATATCAACCATTCTATTCTTCCCCCATATCAAAGCCATTTTTCCCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAATATCAACCATTCTATTCTTCCCCCATATCAAAGCCATTTTTCCCC  150

seq1  TAGCTGCAAGATTAAAAGGTGGGTGCCTCAAATCTATACAATCAGAGTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTGCAAGATTAAAAGGTGGGTGCCTCAAATCTATACAATCAGAGTTG  200

seq1  GTTATATTTCATTGGTTACAGTGAATGGGCAAAGACTGGTCCACAACCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATATTTCATTGGTTACAGTGAATGGGCAAAGACTGGTCCACAACCTA  250

seq1  AGGAAAGCTCGTCGTAATTCTTTCTCAAAGCCACCATATTCCCTTATGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAGCTCGTCGTAATTCTTTCTCAAAGCCACCATATTCCCTTATGTT  300

seq1  CCCAAGACAGGAAGATATGAACCTCTGTCTGGTAGCAGACATGTGGAAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAGACAGGAAGATATGAACCTCTGTCTGGTAGCAGACATGTGGAAAG  350

seq1  AATGTGCTTGCAGAATGAAGTTGTGTAAGCACACAGAAGAGATCTTGTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGCTTGCAGAATGAAGTTGTGTAAGCACACAGAAGAGATCTTGTGA  400

seq1  GATTGTATCTTGGAATGAAGGCTCTGTGGCTCTCACTTCTGAATCTCTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGTATCTTGGAATGAAGGCTCTGTGGCTCTCACTTCTGAATCTCTCT  450

seq1  TTTCAACTTGAACAATACCGTTCAAGCATTTGTGAACGAAGACTTAGAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAACTTGAACAATACCGTTCAAGCATTTGTGAACGAAGACTTAGAAA  500

seq1  TGAAGAACTCCCACTTTGCACAAGCTATTTCTGGTTGATCTCTGTCCCTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGAACTCCCACTTTGCACAAGCTATTTCTGGTTGATCTCTGTCCCTA  550

seq1  GCAAAAGAGGAAAGGTAGATGGATAAACGGTATAATCAAGAATAATAGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAAGAGGAAAGGTAGATGGATAAACGGTATAATCAAGAATAATAGGA  600

seq1  ATGATAATAAAAATCAGTCATCTCTAAGATGTTGAGATTAACTTTAAGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATAATAAAAATCAGTCATCTCTAAGATGTTGAGATTAACTTTAAGCT  650

seq1  TCTTAGACTATCTTTGTGTGGACCCTTAGCATTTGGACATTAAGTACCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAGACTATCTTTGTGTGGACCCTTAGCATTTGGACATTAAGTACCTG  700

seq1  TTATGCATATTGCATTTTCTAAATCATCCAGGAATTC  737
      |||||||||||||||||||||||||||||||||||||
seq2  TTATGCATATTGCATTTTCTAAATCATCCAGGAATTC  737

seq1: chr1_165252668_165253786
seq2: B6Ng01-067N02.g_67_1177

seq1  GAATTCTTAGAAATTAAGCTATTCATTTCCACAAACTGATCATCAAGGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTAGAAATTAAGCTATTCATTTCCACAAACTGATCATCAAGGAA  50

seq1  GAAATTAAAATGCAAATTAAAAGTAATTTGGGCCATATATCATATCCTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTAAAATGCAAATTAAAAGTAATTTGGGCCATATATCATATCCTAT  100

seq1  ATATTCAACTCATATTTTTAAAATATGATTAATGGGGATTTTTATACTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTCAACTCATATTTTTAAAATATGATTAATGGGGATTTTTATACTCT  150

seq1  TAAGACTTTTTTAAAAGAAGAACTAAAACCTATTTGTTTAGTTCACATAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGACTTTTTTAAAAGAAGAACTAAAACCTATTTGTTTAGTTCACATAA  200

seq1  AGGTAAAAGTTGATATTTCAGCAAAGTTAAGGCTGAAAGTGAAAGCACAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAAAAGTTGATATTTCAGCAAAGTTAAGGCTGAAAGTGAAAGCACAT  250

seq1  GCCTTTAACCCCAGCACTTAGAGGACGAGGTAGGTGGAGTTCTATGAGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTTAACCCCAGCACTTAGAGGACGAGGTAGGTGGAGTTCTATGAGTG  300

seq1  TGAAAGTCTCCCCACCAAGAGATCTTCAGACTCAACTGGAATGAAATTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGTCTCCCCACCAAGAGATCTTCAGACTCAACTGGAATGAAATTGA  350

seq1  ATTTTTCCAAATATTAAAAAAAACAACAGTAACATCATAAAACTTAGTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTCCAAATATTAAAAAAAACAACAGTAACATCATAAAACTTAGTGA  400

seq1  AGAACAAAGAGGAAATGCTTCTCAACTTTATATGAGAACACTGTGATCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACAAAGAGGAAATGCTTCTCAACTTTATATGAGAACACTGTGATCCT  450

seq1  AACAACACTACCAAAACTGGAGAAGAAAAATAATCACAAAGAAGAAAAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAACACTACCAAAACTGGAGAAGAAAAATAATCACAAAGAAGAAAAAT  500

seq1  TGCATGCTAATCTTTGTAAGTGGACAAAACTTCTACACAAAAATTTTGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATGCTAATCTTTGTAAGTGGACAAAACTTCTACACAAAAATTTTGGA  550

seq1  AAAATCAAGCAAGTGAGATACAAGGAACCAAACACTTCACAACCAAGCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCAAGCAAGTGAGATACAAGGAACCAAACACTTCACAACCAAGCTG  600

seq1  ACTTTCTTGTGGGAATGCAAGGTAGGTCTTATATTATAAAATAAACTAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTCTTGTGGGAATGCAAGGTAGGTCTTATATTATAAAATAAACTAAT  650

seq1  GGGAATTTAAGCATAAGGACTTGCTGGTAAAATGTCAAAGTATTTCTCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAATTTAAGCATAAGGACTTGCTGGTAAAATGTCAAAGTATTTCTCTT  700

seq1  AAAGTTTTGGATGAGGAACCTACAACTAATACTTCTATATAATCTGCCTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTTTGGATGAGGAACCTACAACTAATACTTCTATATAATCTGCCTG  750

seq1  AAGGCAGAGGGTGTGCAACAAAGATAGAGACTATGTTGGACAGGAAAATG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCAGAGGGTGTGCAACAAAGATAGAGACTATGTTGGACAGGAAAATG  800

seq1  GCTTTCTTTGTGTGAAAAAAGAGCAGAGTAATGCATCTATTCTG-AAGAA  849
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  GCTTTCTTTGTGTGAAAAAAGAGCAGAGTAATGCATCTATTCTGAAAGAA  850

seq1  ACATCCATATACCATAATTCAGTCTCCAGAATGGTTAGCTAAACTGTTAC  899
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  ACATCCATATACCATAATTCAGTCTTCAGAATGGTTAGCTAAACTGTTAC  900

seq1  ATTTAGGGATTCAGAACAATAATAATTCCATTCTAATGCCCTGAGAACAC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAGGGATTCAGAACAATAATAATTCCATTCTAATGCCCTGAGAACAC  950

seq1  TCATGCCCTGCCAGTAAATAAGTCCACCTAACTTTAAATCTCATATATTG  999
      ||||||||||||||||||||||||||||||||||||||||||||  ||||
seq2  TCATGCCCTGCCAGTAAATAAGTCCACCTAACTTTAAATCTCATTAATTG  1000

seq1  TTGTGGGACATATGCACAGCTACAACTTTGAAAAAGT-GATAACA-TCTA  1047
      |||| |||||||||||||||||| ||||||||||||| ||||||| ||||
seq2  TTGT-GGACATATGCACAGCTAC-ACTTTGAAAAAGTGGATAACATTCTA  1048

seq1  CAAGTATCAAATACATACTATGACCCTAATATTCAATTTCTAAGTTAATA  1097
      | ||| ||||||| ||||||||| |||  ||||  |||||| ||||| | 
seq2  C-AGT-TCAAATA-ATACTATGAACCT--TATTTCATTTCT-AGTTATT-  1091

seq1  TACAACTAAGGGCATGT-GCTTA  1119
          ||||||||||||| |||||
seq2  ---CACTAAGGGCATGTGGCTTA  1111