BAC Information

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BAC

Clone NameB6Ng01-068F20
Chromosome1 (Build37)13 (Build37)
Map Location 88,468,301 - 88,468,9233,028,267 - 3,028,344
singlet/doubletsingletsinglet
Overlap genePde6d
Upstream geneSp110, Sp140, Sp100, A630001G21Rik, Cab39, Itm2c, 4933407L21Rik, Gpr55, Spata3, 2810459M11Rik, Psmd1, Htr2b, Armc9, B3gnt7, EG383538, Ncl, Snord82, Nmur1, 1700019O17Rik, LOC100040414, Ptma
Downstream geneCops7b, Nppc, 4930429A22Rik, EG620213, LOC208256, Akp5, Alpi, Akp3, Ecel1, 1700027L20Rik, Chrnd, Chrng, Eif4e2, Efhd1, Tnrc15, LOC100040600, LOC100040591, 3110079O15Rik, Ngef, LOC620454
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-068F20.bB6Ng01-068F20.g
ACCDH886973DH886974
length62389
definitionDH886973|Mus musculus domesticus DNA, BAC clone: B6Ng01-068F20, 5' end.DH886974|Mus musculus domesticus DNA, BAC clone: B6Ng01-068F20, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(88,468,301 - 88,468,923)(3,028,267 - 3,028,344)
sequence
gaattccaggacagccagggctacatggaaaaatcctgcctgaaaaaaat
aagatgaagtaattgaaaatagaattaaaaccaatctctgacctcctcaa
gacttgtataagagagatgggaagaataacagcacagcatggtaagtgca
cagcattatcctaagtgcagtagaaatgcagagtgattgctgctgggggc
gttctggaaggcttcagagttgtcatctaaatagagtcttgaaagatgag
taggtgttaaggagtctaatctttagatactggggagtagcagcaacacg
atggcaggcacagtgcagaggagcatttcgggcatgagctggagccaagc
aaaggagcctagagatcaaaagtccttagaggattggagtgggaatttca
gtccgtgaatatgagacactatactgagagtctatgacagtttacacatt
agtactgatcttaagagtaatatctaaggaaacaagatgaactatgatct
gtcaatattagaggattgatagaggaattaaagtcagcaaatatattatt
caagaaatctggtgacaaaaccaagtttaggaggtagcttgagttaaggt
tatgactggtgggtgtgtgggtg
aagaccagcttgtatacagagaaaccctgttctggaaaaaaaaaagaaag
gaaggaaagaaggaagggagggagggagggagggaggga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_88468301_88468923
seq2: B6Ng01-068F20.b_42_664 (reverse)

seq1  CACCCACACACCCACCAGTCATAACCTTAACTCAAGCTACCTCCTAAACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCACACACCCACCAGTCATAACCTTAACTCAAGCTACCTCCTAAACT  50

seq1  TGGTTTTGTCACCAGATTTCTTGAATAATATATTTGCTGACTTTAATTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTTGTCACCAGATTTCTTGAATAATATATTTGCTGACTTTAATTCC  100

seq1  TCTATCAATCCTCTAATATTGACAGATCATAGTTCATCTTGTTTCCTTAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATCAATCCTCTAATATTGACAGATCATAGTTCATCTTGTTTCCTTAG  150

seq1  ATATTACTCTTAAGATCAGTACTAATGTGTAAACTGTCATAGACTCTCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTACTCTTAAGATCAGTACTAATGTGTAAACTGTCATAGACTCTCAG  200

seq1  TATAGTGTCTCATATTCACGGACTGAAATTCCCACTCCAATCCTCTAAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGTGTCTCATATTCACGGACTGAAATTCCCACTCCAATCCTCTAAGG  250

seq1  ACTTTTGATCTCTAGGCTCCTTTGCTTGGCTCCAGCTCATGCCCGAAATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTGATCTCTAGGCTCCTTTGCTTGGCTCCAGCTCATGCCCGAAATG  300

seq1  CTCCTCTGCACTGTGCCTGCCATCGTGTTGCTGCTACTCCCCAGTATCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTCTGCACTGTGCCTGCCATCGTGTTGCTGCTACTCCCCAGTATCTA  350

seq1  AAGATTAGACTCCTTAACACCTACTCATCTTTCAAGACTCTATTTAGATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATTAGACTCCTTAACACCTACTCATCTTTCAAGACTCTATTTAGATG  400

seq1  ACAACTCTGAAGCCTTCCAGAACGCCCCCAGCAGCAATCACTCTGCATTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACTCTGAAGCCTTCCAGAACGCCCCCAGCAGCAATCACTCTGCATTT  450

seq1  CTACTGCACTTAGGATAATGCTGTGCACTTACCATGCTGTGCTGTTATTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTGCACTTAGGATAATGCTGTGCACTTACCATGCTGTGCTGTTATTC  500

seq1  TTCCCATCTCTCTTATACAAGTCTTGAGGAGGTCAGAGATTGGTTTTAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCATCTCTCTTATACAAGTCTTGAGGAGGTCAGAGATTGGTTTTAAT  550

seq1  TCTATTTTCAATTACTTCATCTTATTTTTTTCAGGCAGGATTTTTCCATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATTTTCAATTACTTCATCTTATTTTTTTCAGGCAGGATTTTTCCATG  600

seq1  TAGCCCTGGCTGTCCTGGAATTC  623
      |||||||||||||||||||||||
seq2  TAGCCCTGGCTGTCCTGGAATTC  623

seq1: chr13_3028267_3028344
seq2: B6Ng01-068F20.g_89_160 (reverse)

seq1  TCCCTCCCTCCCTCCCTCCCTCCCTTTCTTCATTCCTTCCTTTCTTTTTT  50
      |||||||||||||||||||||||||| |||| ||||||||||||      
seq2  TCCCTCCCTCCCTCCCTCCCTCCCTTCCTTCTTTCCTTCCTTTC------  44

seq1  TTTTTTTTTTCCGAGACAGGGTTTCTCT  78
      ||||||||||||   |||||||||||||
seq2  TTTTTTTTTTCCAGAACAGGGTTTCTCT  72