BAC Information

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BAC

Clone NameB6Ng01-068G20
Chromosome1 (Build37)
Map Location 52,888,042 - 52,888,936
singlet/doubletsinglet
Overlap genenone
Upstream geneMyo1b, EG667010, LOC667014, Stat4, LOC100042634, Stat1, Gls, LOC546735, Nab1, LOC546736, Gm553, LOC100042094, EG433305, 5330401P04Rik, 2210010L05Rik, Inpp1
Downstream geneHibch, 1700019D03Rik, Gdf8, 1700019A02Rik, Pms1, LOC671024, Ormdl1, Osgepl1, Asnsd1, EG627858, EG627866, LOC100042162, Dnahc7, Stk17b, Hecw2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-068G20.bB6Ng01-068G20.g
ACCDH887017DH887018
length1,1631,028
definitionDH887017|Mus musculus domesticus DNA, BAC clone: B6Ng01-068G20, 5' end.DH887018|Mus musculus domesticus DNA, BAC clone: B6Ng01-068G20, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcataaattcaggtgacagc
agatgctggcaaggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatccgtctggcggttcctca
gaaaattggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagatgccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaaactggaaagaacccagat
acccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
ggaactcacacaatatgtactcactgataagtggatattagcccaaaacc
taggatacccaagatataagatacaatttcctaaacacatgaaactcaag
aaaaattaagactgaagtgtggacactatgcccctccttagaagtgggaa
caaaacacccttggaaggagttacagagacaaagtttggagctgagatga
aaggatggaccatgtagagactgccatatccagggatccaccccataatc
agcatccaaacgctgacaccattgcatacactagcaagatttatcgaaag
gacccagatgtagctgtctcatgcgagactatgccggggcctagcaaaca
cagaagtggatgctcacagtcagctaatggatggatcacagggctcccaa
tggaggagctagagaagtacccaaggagctaaagggatctgcaccctata
gtggatcaacattatgactaccagtacccgagctcttgactctagctgca
tattgatcaaagatgcctagtcggccatcactgaagagagtccatggact
cgcaactttaatgcccgacaggacgacgggcaaaaggggatgggccggat
gggagatggtggt
gaattcttttttatatattgtgctttgaaatgagttatctttagttttgt
ttcagaaatgtatacaacttgttttgctattttgtggtttcaacataaaa
ctaatttaatagaaaataatgtatttatttcttaaggattaaaaataaaa
catttaaacgcttccttaaaatgtctatatgctgactcaaattcttttcc
taaacgacaccaatggtgtctcttccagaccgcctgccaagggatcactc
tagaaaaaacttaaatcaaggatgagagtggatgggcaatggcaaacgag
tggcccctcctgcaatgattcttctgacttttaaaattatcaaaaccctt
tcctttgtgatctaaagctgtttcttatgcttttcctgaggaaaaaaatg
tgactttgggaatatgaaagtctatatgaaagcatagtttatattaagcc
tataaatcacacatttactgacaataagtcaaaaatattttaaaataaca
ctttaacaaaacaaaacataaataacaaaaaaggcttttgaataaataag
atgttacaattttgacagatgaatgcaaatttgcatactaataagatgaa
tgtggttgtttatttctatagaaaaattaaatcttagctaaatttttgat
cgcgtaagacacagcatatttgatgatttttcagaattcaccaatattct
gattctctaatcagcaaaactgagaatgctgttttacataagtagaaaat
aagatgacagaagcatgtttcagaattactgaaaatcctcttctcattgc
aggtcattgaaacgaattaaaaaatctgtttaaggctgttttatgaaact
caaggtggcaattcaaacagtgatttagaaaatcaagcattcctagcaat
acacagatgtactaagttgttactttcatgctgagaaataatggtagaaa
tagttgaaatatttttccatattaaactattatattttgtagaacagaaa
catttgtatgcacagcaggacactataa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_52888042_52888936
seq2: B6Ng01-068G20.g_70_962

seq1  GAATTCTTTTTTATATATTGTGCTTTGAAATGAGTTATCTTTAGTTTTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTTTATATATTGTGCTTTGAAATGAGTTATCTTTAGTTTTGT  50

seq1  TTCAGAAATGTATACAACTTGTTTTGCTATTTTGTGGTTTCAACATAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGAAATGTATACAACTTGTTTTGCTATTTTGTGGTTTCAACATAAAA  100

seq1  CTAATTTAATAGAAAATAATGTATTTATTTCTTAAGGATTAAAAATAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATTTAATAGAAAATAATGTATTTATTTCTTAAGGATTAAAAATAAAA  150

seq1  CATTTAAACGCTTCCTTAAAATGTCTATATGCTGACTCAAATTCTTTTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTAAACGCTTCCTTAAAATGTCTATATGCTGACTCAAATTCTTTTCC  200

seq1  TAAACGACACCAATGGTGTCTCTTCCAGACCGCCTGCCAAGGGATCACTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACGACACCAATGGTGTCTCTTCCAGACCGCCTGCCAAGGGATCACTC  250

seq1  TAGAAAAAACTTAAATCAAGGATGAGAGTGGATGGGCAATGGCAAACGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAAAAACTTAAATCAAGGATGAGAGTGGATGGGCAATGGCAAACGAG  300

seq1  TGGCCCCTCCTGCAATGATTCTTCTGACTTTTAAAATTATCAAAACCCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCCCTCCTGCAATGATTCTTCTGACTTTTAAAATTATCAAAACCCTT  350

seq1  TCCTTTGTGATCTAAAGCTGTTTCTTATGCTTTTCCTGAGGAAAAAAATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTGTGATCTAAAGCTGTTTCTTATGCTTTTCCTGAGGAAAAAAATG  400

seq1  TGACTTTGGGAATATGAAAGTCTATATGAAAGCATAGTTTATATTAAGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTTTGGGAATATGAAAGTCTATATGAAAGCATAGTTTATATTAAGCC  450

seq1  TATAAATCACACATTTACTGACAATAAGTCAAAAATATTTTAAAATAACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAATCACACATTTACTGACAATAAGTCAAAAATATTTTAAAATAACA  500

seq1  CTTTAACAAAACAAAACATAAATAACAAAAAAGGCTTTTGAATAAATAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAACAAAACAAAACATAAATAACAAAAAAGGCTTTTGAATAAATAAG  550

seq1  ATGTTACAATTTTGACAGATGAATGCAAATTTGCATACTAATAAGATGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTACAATTTTGACAGATGAATGCAAATTTGCATACTAATAAGATGAA  600

seq1  TGTGGTTGTTTATTTCTATAGAAAAATTAAATCTTAGCTAAATTTTTGAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGTTGTTTATTTCTATAGAAAAATTAAATCTTAGCTAAATTTTTGAT  650

seq1  CGCGTAAGACACAGCATATTTGATGATTTTTCAGAATTCACCAATATTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCGTAAGACACAGCATATTTGATGATTTTTCAGAATTCACCAATATTCT  700

seq1  GATTCTCTAATCAGCAAAACTGAGAATGCTGTTTTACATAAGTAGAAAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCTCTAATCAGCAAAACTGAGAATGCTGTTTTACATAAGTAGAAAAT  750

seq1  AAGATGACAGAAGCATGTTTCAGAATTACTGAAAATCCTCTTCTCATTGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATGACAGAAGCATGTTTCAGAATTACTGAAAATCCTCTTCTCATTGC  800

seq1  AGGTCATTGAAACGAATTAAAAAATCTGTTTAAAGGCTGTTTTATGAAAC  850
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  AGGTCATTGAAACGAATTAAAAAATCTGTTT-AAGGCTGTTTTATGAAAC  849

seq1  TCAAGGTGGCAATTCAAACAGTGATTTAGAAAAATCAAGCATTCC  895
      ||||||||||||||||||||||||||||| |||||||||||||||
seq2  TCAAGGTGGCAATTCAAACAGTGATTTAG-AAAATCAAGCATTCC  893