BAC Information

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BAC

Clone NameB6Ng01-068J02
Chromosome1 (Build37)
Map Location 61,495,159 - 61,609,101
singlet/doubletdoublet
Overlap genenone
Upstream geneAbi2, Raph1, LOC100043027, LOC100042533, Eif4a-ps4, Cd28, LOC667555, Rpl18-rs8, Ctla4, LOC100043049, Icos, LOC433313, LOC100042566
Downstream genePard3b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-068J02.bB6Ng01-068J02.g
ACCDH887117DH887118
length884734
definitionDH887117|Mus musculus domesticus DNA, BAC clone: B6Ng01-068J02, 5' end.DH887118|Mus musculus domesticus DNA, BAC clone: B6Ng01-068J02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(61,608,211 - 61,609,101)(61,495,159 - 61,495,891)
sequence
gaattctcagcggtacttgtatgatcttggacagactcaaggtaacttaa
aacagccgtatttggagactaaaactaatccctctcagagagtcttctag
gtatatcttaccaaatcccagatagaacctaaaaaccatctccttaaagg
ataattgacttactgatgtttagtttggagggagaactactcatgggaga
tctgccagctgtctttgaagaattggaagagtgccaggtcttgctttaca
tgtaataagaacagtaccttgactccttggatcatgatgtatcctcagcc
ccttgagctgattttgattacctacaattgggcccagactcattgttcaa
agagcaggattgatactcaacactttgctggagtctggctggcggcttta
acacagcttcatagcattctgtgaaggaagaggagatagaggagaaagag
gaagaggagaagggaaaggaggaggaggacaagaaagaggggaaagagga
gaaaggagagaattataacatagaaagaggaactttttaatggaagcttc
ttgtaaaagcaatgagttgtgaaatattattaaatttcaaactaataaaa
ccatcagaaacatatctgctcagtggggtttctcgacaagagtctttgag
atagatccctcactgttcccagctggactccagcccactcagtgaccttt
ttggagggccctgtcaatccgtggggtgcttgctgcatttcatactggca
tgcttgctcaattattgcactcactgaacatggtggatatgcacgaataa
agtattctaataggattaatagaggaaaaggatgtacttttctgtgacta
ctatggtttactggaataagcttttccttaggct
gaattcattatctattaggagacaaagagaactcagggcttgggtaggtc
agaaatccagtagagccctaaatacaggaaaggtgaaagagaaggccaca
atggaggtcgaaacctccattgggtccttccagggagatctgaagctgga
gaagagacacttcccagtcagccagggaggaggaagacttgtcttggctt
ttttcctttttttcccccgaacagcttcctgaacctgtcaccaaatgcat
cagaagagagtagagaagggagcctggaatgccagcctgctgtacagagg
tgaacaggaatgagtcgggatggacctaaagcaaataagctatcatagga
tggcaagactcatgtcataggagcatgcattgacaagctatactgacctg
ccatttaaagcaggtacatttgagtcctcaacaattttccttgggccaac
tcagtactaaagtgttggcacatacaggacatgtaatgaactctgtggct
aagtatcctaccatgctcattccatctgctataccatgaagagcccccta
agcctgtgaaaaagcagaggcatgaaaaatgtaagatttttttttcctaa
tatggtagaatcattaaaacatcccggtttagctatgagcacttcagaac
tacggcaccattttagcactgccttggcccccaattctacctatcatcac
tatgctctgctggctttctgtctctgtggtcctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_61608211_61609101
seq2: B6Ng01-068J02.b_40_923 (reverse)

seq1  AGCCTAAGGGAACTGCTTATTCCAGTAAATATATCGTAGTCACAGAAATG  50
      ||||||| ||||  |||||||||||||||   || ||||||||||||| |
seq2  AGCCTAA-GGAAAAGCTTATTCCAGTAAA-CCATAGTAGTCACAGAAAAG  48

seq1  TACATTGCTTTTTGCTCTATTAATACTATTTAAATAATTTATTTTGTGCA  100
      |||||  | |||| |||||||||| |||||  |||| |||| || |||||
seq2  TACAT--CCTTTTCCTCTATTAATCCTATTAGAATACTTTA-TTCGTGCA  95

seq1  TTATCCATTATGTTCAATGAGTTGCAATAATTTGGCAAGCATGGCAGTAT  150
       ||||||  ||||||| |||| ||||||||||  ||||||||| ||||||
seq2  -TATCCACCATGTTCAGTGAG-TGCAATAATTGAGCAAGCATGCCAGTAT  143

seq1  GAATATACAGCAAGCACCCCACGGATTGCCAGGGCCCACC-AAAAGGTCA  199
      ||| || ||||||||||||||||||||| |||||||| || |||||||||
seq2  GAA-ATGCAGCAAGCACCCCACGGATTGACAGGGCCCTCCAAAAAGGTCA  192

seq1  CTGAGTCTGCTGGAGTCCTGCTGGGAACAGTGAGGGATCTATCTCAAAGA  249
      ||||||  |||||||||| |||||||||||||||||||||||||||||||
seq2  CTGAGTGGGCTGGAGTCCAGCTGGGAACAGTGAGGGATCTATCTCAAAGA  242

seq1  CTCTTGTCGAGAAACCCCACTGAGCAGATATGTTTCTGATGGTCTTATTA  299
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  CTCTTGTCGAGAAACCCCACTGAGCAGATATGTTTCTGATGGTTTTATTA  292

seq1  GTTTAAAATTTAATAATATTTCACAACTCATTGCTTTTACAAGAAGCTTC  349
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGAAATTTAATAATATTTCACAACTCATTGCTTTTACAAGAAGCTTC  342

seq1  CATTAAAAAGTTCCTCTTTCTCTGTTATAATTCTCTCCTTTCTCCTCTTT  399
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  CATTAAAAAGTTCCTCTTTCTATGTTATAATTCTCTCCTTTCTCCTCTTT  392

seq1  CCCCTCTTTCTTGTCCTCCTCCTCCTTTCCCTTCTCCTCTTCCTCTTTCT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTCTTTCTTGTCCTCCTCCTCCTTTCCCTTCTCCTCTTCCTCTTTCT  442

seq1  CCTCTATCTCCTCTTCCTTCACAGAATGCTATGAAGCTGTGTTAAAGCCG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTATCTCCTCTTCCTTCACAGAATGCTATGAAGCTGTGTTAAAGCCG  492

seq1  CCAGCCAGACTCCAGCAAAGTGTTGAGTATCAATCCTGCTCTTTGAACAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCCAGACTCCAGCAAAGTGTTGAGTATCAATCCTGCTCTTTGAACAA  542

seq1  TGAGTCTGGGCCCAATTGTAGGTAATCAAAATCAGCTCAAGGGGCTGAGG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTCTGGGCCCAATTGTAGGTAATCAAAATCAGCTCAAGGGGCTGAGG  592

seq1  ATACATCATGATCCAAGGAGTCAAGGTACTGTTCTTATTACATGTAAAGC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATCATGATCCAAGGAGTCAAGGTACTGTTCTTATTACATGTAAAGC  642

seq1  AAGACCTGGCACTCTTCCAATTCTTCAAAGACAGCTGGCAGATCTCCCAT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACCTGGCACTCTTCCAATTCTTCAAAGACAGCTGGCAGATCTCCCAT  692

seq1  GAGTAGTTCTCCCTCCAAACTAAACATCAGTAAGTCAATTATCCTTTAAG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTAGTTCTCCCTCCAAACTAAACATCAGTAAGTCAATTATCCTTTAAG  742

seq1  GAGATGGTTTTTAGGTTCTATCTGGGATTTGGTAAGATATACCTAGAAGA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATGGTTTTTAGGTTCTATCTGGGATTTGGTAAGATATACCTAGAAGA  792

seq1  CTCTCTGAGAGGGATTAGTTTTAGTCTCCAAATACGGCTGTTTTAAGTTA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTGAGAGGGATTAGTTTTAGTCTCCAAATACGGCTGTTTTAAGTTA  842

seq1  CCTTGAGTCTGTCCAAGATCATACAAGTACTGCTGAGAATTC  891
      |||||||||||||||||||||||||||||| |||||||||||
seq2  CCTTGAGTCTGTCCAAGATCATACAAGTACCGCTGAGAATTC  884

seq1: chr1_61495159_61495891
seq2: B6Ng01-068J02.g_67_800

seq1  GAATTCATTATCTATTAGGAGACAAAGAGAACTCAGGGCTTGGGTAGGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTATCTATTAGGAGACAAAGAGAACTCAGGGCTTGGGTAGGTC  50

seq1  AGAAATCCAGTAGAGCCCTAGATACAGGAAAGGTGAAAGAGAAGGCCACA  100
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  AGAAATCCAGTAGAGCCCTAAATACAGGAAAGGTGAAAGAGAAGGCCACA  100

seq1  ATGGAGGTCGAAACCTCCATTGGGTCCTTCCAGGGAGATCTGAAGCTGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAGGTCGAAACCTCCATTGGGTCCTTCCAGGGAGATCTGAAGCTGGA  150

seq1  GAAGAGACACTTCCCAGTCAGCCAGGGAGGAGGAAGACTTGTCTTGGCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGACACTTCCCAGTCAGCCAGGGAGGAGGAAGACTTGTCTTGGCTT  200

seq1  TTTTCCTTTTTTTCCCCCGAACAGCTTCCTGAACCTGTCACCAAATGCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCTTTTTTTCCCCCGAACAGCTTCCTGAACCTGTCACCAAATGCAT  250

seq1  CAGAAGAGAGTAGAGAAGGGAGCCTGGAATGCCAGCCTGCTGTACAGAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGAGAGTAGAGAAGGGAGCCTGGAATGCCAGCCTGCTGTACAGAGG  300

seq1  TGAACAGGAATGAGTCGGGATGGACCTAAAGCAAATAAGCTATCATAGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACAGGAATGAGTCGGGATGGACCTAAAGCAAATAAGCTATCATAGGA  350

seq1  TGGCAAGACTCATGTCATAGGAGCATGCATTGACAAGCTATACTGACCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAAGACTCATGTCATAGGAGCATGCATTGACAAGCTATACTGACCTG  400

seq1  CCATTTAAAGCAGGTACATTTGAGTCCTCAACAATTTTCCTTGGGCCAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTAAAGCAGGTACATTTGAGTCCTCAACAATTTTCCTTGGGCCAAC  450

seq1  TCAGTACTAAAGTGTTGGCACATACAGGACATGTAATGAACTCTGTGGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTACTAAAGTGTTGGCACATACAGGACATGTAATGAACTCTGTGGCT  500

seq1  AAGTATCCTACCATGCTCATTCCATCTGCTATACCATGAAGAGCCCCCTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTATCCTACCATGCTCATTCCATCTGCTATACCATGAAGAGCCCCCTA  550

seq1  AGCCTGTGAAAAAGCAGAGGCATG-AAAATGTAAGATTTTTTTTTCCTAA  599
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  AGCCTGTGAAAAAGCAGAGGCATGAAAAATGTAAGATTTTTTTTTCCTAA  600

seq1  TAATGGTAGAATCATTAAAACATCCCGGTTTAGCTATGAGCACTTTCAGA  649
      | ||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  T-ATGGTAGAATCATTAAAACATCCCGGTTTAGCTATGAGCAC-TTCAGA  648

seq1  ACTACAGCACCA-TTTAGCACTGCCTTGGCCCCAAGTCCTACCTATCACC  698
      ||||| |||||| |||||||||||||||||||| | | |||||||||| |
seq2  ACTACGGCACCATTTTAGCACTGCCTTGGCCCCCAATTCTACCTATCATC  698

seq1  ACTATGCTCTGCT-GCCTTCTGTCACTGTGGTCCTG  733
      ||||||||||||| || ||||||| |||||||||||
seq2  ACTATGCTCTGCTGGCTTTCTGTCTCTGTGGTCCTG  734