BAC Information

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BAC

Clone NameB6Ng01-068K15
Chromosome3 (Build37)1 (Build37)
Map Location 131,555,012 - 131,556,1099,706,136 - 9,706,514
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC545568, Lef1, 6720418B01Rik, Hadh, Cyp2u1, Sgms2, LOC100043443, Papss1
Downstream geneOlfr375-ps1, Dkk2, LOC100039018, EG433653, LOC668857, Scye1, A630047E20Rik, LOC668858, Npnt
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-068K15.bB6Ng01-068K15.g
ACCDH887185DH887186
length1,091702
definitionDH887185|Mus musculus domesticus DNA, BAC clone: B6Ng01-068K15, 5' end.DH887186|Mus musculus domesticus DNA, BAC clone: B6Ng01-068K15, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(131,555,012 - 131,556,109)(9,706,136 - 9,706,514)
sequence
gaattctcaaaagagaaagctgtatgtgtggaagcgaggcaatgggaagt
tcagagactgagcaagcttagtggccccttctccgcgttttcacaatact
ttgagaaattgactcttaagcactgaattgcatcatgcattgctgggatt
acttatctatctgtctatgtcataagactgcgaggtccttggtggcaggt
catggatgctactcatcagcttcttgctacttcctgacatggtattgggt
tcctggtcccctatgaggaaatctgtgttggacgaatttagaaagtgaag
aagaaaatcatgtatacttccactaaacagaggcacctctccttttggtg
tatttcagcagaatggtggtgatttggaaatggagttgcctactgatcta
gcattgtgggaatacacctgtatgtaactataacaatggcctcttgctgt
tatcactcggtccacaataccccaggggcattgcatttctgctggcctgt
tttctttagtaccctgatgtgctctagaccatgatcctgagaataaattg
tccatctactctaacctgaattccgggcaggagtgcaccaggacattctt
tcctgagtggagagagaattcattggcaagctcacatgaaaatattccat
ttctcaaatgatcccacctgcaaataagacccatgattattatttattat
ttgttgaacacaagctctgtacttagtgctatttaaaaaaaatacagaga
ataatacaagcacaacataaaccactggggactatacggtccatgctagg
gcttaacaatccacaccagacacagcatgcaatacatctatgacaagatt
aaaacagtgattgcatttctgaagcaacagctctcagagatatttttttg
actctaaaacttacacaaggtattttgactgaatatatttttttttaatc
aaaaatgagcaattttcaggagacagttaaagagaaaaggacggtgatgt
gacagatagggttcagagtgaggtcgagcattaccaatgtgacactagga
agccaccaattgattgggcagggaagatgcctcgtgtcaca
gaattcataagtactgtcttctccagaagaccctgtttgtcccagtcccg
gctgacctctgacttacaatctttccaacctttctttttctatgatccct
aggcattgagggaaagggtaggatgtcaatgtctcatttacacagatgca
cactccacaagtatttattctctgctcttcaaccagctgtgagtttctag
gctgacttccaactactgtacaaggaaacttctttaatgagggctgagag
ctacgctaatctataaatgaagagatatgaatttagaaggcagtttcact
agtgtaatttttttttcattttttcaagagattttattttactttttttt
taaattaggtattttcctcgtttacatttccaatgctatctcaaaagtcc
cccatacccacccccccaatcccctacccacccactccccctttttggcc
ctggcgttcccctgtactggggcatataaagtttgcaagtccaaagggcc
tctctttccagtgatggctgactaggccatcttttgatacatatgcagct
agagacaagctctggggtactggttagttcatattgttgttccacatata
gggttgcagtttccctttagctccttgggtactttctctagctcctccat
tgggggctgtgtgacccatccaatagctgactgtgagcatccacttctgt
gt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_131555012_131556109
seq2: B6Ng01-068K15.b_48_1138

seq1  GAATTCTCAAAAGAGAAAGCTGTATGTGTGGAAGCGAGGCAATGGGAAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAAAAGAGAAAGCTGTATGTGTGGAAGCGAGGCAATGGGAAGT  50

seq1  TCAGAGACTGAGCAAGCTTAGTGGCCCCTTCTCCGCGTTTTCACAATACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGACTGAGCAAGCTTAGTGGCCCCTTCTCCGCGTTTTCACAATACT  100

seq1  TTGAGAAATTGACTCTTAAGCACTGAATTGCATCATGCATTGCTGGGATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGAAATTGACTCTTAAGCACTGAATTGCATCATGCATTGCTGGGATT  150

seq1  ACTTATCTATCTGTCTATGTCATAAGACTGCGAGGTCCTTGGTGGCAGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTATCTATCTGTCTATGTCATAAGACTGCGAGGTCCTTGGTGGCAGGT  200

seq1  CATGGATGCTACTCATCAGCTTCTTGCTACTTCCTGACATGGTATTGGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGATGCTACTCATCAGCTTCTTGCTACTTCCTGACATGGTATTGGGT  250

seq1  TCCTGGTCCCCTATGAGGAAATCTGTGTTGGACGAATTTAGAAAGTGAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGTCCCCTATGAGGAAATCTGTGTTGGACGAATTTAGAAAGTGAAG  300

seq1  AAGAAAATCATGTATACTTCCACTAAACAGAGGCACCTCTCCTTTTGGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAATCATGTATACTTCCACTAAACAGAGGCACCTCTCCTTTTGGTG  350

seq1  TATTTCAGCAGAATGGTGGTGATTTGGAAATGGAGTTGCCTACTGATCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCAGCAGAATGGTGGTGATTTGGAAATGGAGTTGCCTACTGATCTA  400

seq1  GCATTGTGGGAATACACCTGTATGTAACTATAACAATGGCCTCTTGCTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTGTGGGAATACACCTGTATGTAACTATAACAATGGCCTCTTGCTGT  450

seq1  TATCACTCGGTCCACAATACCCCAGGGGCATTGCATTTCTGCTGGCCTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCACTCGGTCCACAATACCCCAGGGGCATTGCATTTCTGCTGGCCTGT  500

seq1  TTTCTTTAGTACCCTGATGTGCTCTAGACCATGATCCTGAGAATAAATTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTAGTACCCTGATGTGCTCTAGACCATGATCCTGAGAATAAATTG  550

seq1  TCCATCTACTCTAACCTGAATTCCGGGCAGGAGTGCACCAGGACATTCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATCTACTCTAACCTGAATTCCGGGCAGGAGTGCACCAGGACATTCTT  600

seq1  TCCTGAGTGGAGAGAGAATTCATTGGCAAGCTCACATGAAAATATTCCAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGAGTGGAGAGAGAATTCATTGGCAAGCTCACATGAAAATATTCCAT  650

seq1  TTCTCAAATGATCCCACCTGCAAATAAGACCCATGATTATTATTTATTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCAAATGATCCCACCTGCAAATAAGACCCATGATTATTATTTATTAT  700

seq1  TTGTTGAACACAAGCTCTGTACTTAGTGCTATTTAAAAAAAATACAGAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGAACACAAGCTCTGTACTTAGTGCTATTTAAAAAAAATACAGAGA  750

seq1  ATAATACAAGCACAACATAAACCACTGGGGACTATACGGTCCATGCTAGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATACAAGCACAACATAAACCACTGGGGACTATACGGTCCATGCTAGG  800

seq1  GCTTAACAATCCACACCAGACACAGCATGCAATACATCTATGACAAGATT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTAACAATCCACACCAGACACAGCATGCAATACATCTATGACAAGATT  850

seq1  AAAACAGTGATTGCAATTCTGAAGCAACAGCTCTCAGAGATATTTTTTTG  900
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  AAAACAGTGATTGCATTTCTGAAGCAACAGCTCTCAGAGATATTTTTTTG  900

seq1  ACTCTAAAAACTTACACAAGGTATTTTGACTGAATATA-TTTTTTTTAAT  949
      ||||| |||||||||||||||||||||||||||||||| |||||||||||
seq2  ACTCT-AAAACTTACACAAGGTATTTTGACTGAATATATTTTTTTTTAAT  949

seq1  C-AAAATGAGCAATTTTCAGGAGGACCAGTTAAAGAGAAAAGGGACGGTG  998
      | |||||||||||||||||||||   ||||||||||||||| ||||||||
seq2  CAAAAATGAGCAATTTTCAGGAG--ACAGTTAAAGAGAAAA-GGACGGTG  996

seq1  ATGTGACAGATAGGGTTCCAGAGTGAGGTCGAGCATTTACCAATGTGACA  1048
      ||||||||||||||||| ||||||||||||||||| ||||||||||||||
seq2  ATGTGACAGATAGGGTT-CAGAGTGAGGTCGAGCA-TTACCAATGTGACA  1044

seq1  CTAGTGAGCCACCAATTGATTTGGGCAAGGGAAGGATGCCTGCGTG-CAC  1097
      ||||  ||||||||||||| |||||| |||||| ||||||| |||| |||
seq2  CTAGGAAGCCACCAATTGA-TTGGGC-AGGGAA-GATGCCT-CGTGTCAC  1090

seq1  A  1098
      |
seq2  A  1091

seq1: chr1_9706136_9706514
seq2: B6Ng01-068K15.g_379_772 (reverse)

seq1  ACACAGAAGTGGATGATCACAGTCAGCTATTGGATGGGTCACACGGCCCC  50
      ||||||||||||||| |||||||||||||||||||||||||||| |||||
seq2  ACACAGAAGTGGATGCTCACAGTCAGCTATTGGATGGGTCACACAGCCCC  50

seq1  TAATGGAGGAGCTAGAGAAATTACCCAAGGAGCTAAAGGG-AACTGCAAC  99
       ||||||||||||||||||| ||||||||||||||||||| |||||||||
seq2  CAATGGAGGAGCTAGAGAAAGTACCCAAGGAGCTAAAGGGAAACTGCAAC  100

seq1  CCTATAGGTGGAACAACAATATGAACTAACCAGTACCCGGGAGCTCTTGT  149
      |||||| |||||||||||||||||||||||||||||||  |||  |||||
seq2  CCTATATGTGGAACAACAATATGAACTAACCAGTACCCCAGAG--CTTGT  148

seq1  CTTTAGCTGCATATGTATCAAAAGATGGCCTAGTCGGCCATCACTGCAAA  199
      || |||||||||||||||||||||||||||||||| |||||||||| |||
seq2  CTCTAGCTGCATATGTATCAAAAGATGGCCTAGTCAGCCATCACTGGAAA  198

seq1  GAGAGGCCCATTGAACTTGCAAACTTTATATGCCCCAGTACAGGGGAACG  249
      ||||||||| ||| ||||||||||||||||||||||||||||||||||||
seq2  GAGAGGCCCTTTGGACTTGCAAACTTTATATGCCCCAGTACAGGGGAACG  248

seq1  CCAGGGCCAAAAAGGGGGAGTGGGTGGGTAGGGGATTGGGGGGGTGGGTA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGGCCAAAAAGGGGGAGTGGGTGGGTAGGGGATTGGGGGGGTGGGTA  298

seq1  TGGGGAACCTTTGGGATAGCATTGAAAATGTAAATGAGAAAAATACCTAA  349
      ||||| || |||| |||||||||| ||||||||| ||| |||||||||||
seq2  TGGGGGACTTTTGAGATAGCATTGGAAATGTAAACGAGGAAAATACCTAA  348

seq1  TTAAAAAAAAAA--------------ACTGAAAAAA--AAAAAAAA  379
      || |||||||||                ||||||||  ||||||||
seq2  TTTAAAAAAAAAGTAAAATAAAATCTCTTGAAAAAATGAAAAAAAA  394