BAC Information

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BAC

Clone NameB6Ng01-068K18
Chromosome1 (Build37)10 (Build37)
Map Location 26,093,908 - 26,094,980104,053,903 - 104,054,363
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneBai3, LOC665595
Downstream gene4931408C20Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-068K18.bB6Ng01-068K18.g
ACCDH887191DH887192
length1,066943
definitionDH887191|Mus musculus domesticus DNA, BAC clone: B6Ng01-068K18, 5' end.DH887192|Mus musculus domesticus DNA, BAC clone: B6Ng01-068K18, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(26,093,908 - 26,094,980)(104,053,903 - 104,054,363)
sequence
gaattctcaactgaggaataccgaatggctgaggagcacctgaaaaaatg
ttcaacatccttaatcatcagggtaatgcaaatcaaaacaaccctgagat
cctacctcacaccagtcagaatggctaagtttaaaaattcaggtgacagc
agatgctggcaaggatgtggagaaagagaaagactcctccattgctggtg
ggattgcaaactggtacaaccactctggaaataaagtagggcctttctta
ttcaacttgaataaattgttccttatgtattgtgttctcgtaactacact
tttccctgaagttacccaggtgatattgacttctaggcagtattactgga
agcactgattccaaaagataccacttggtagcattgacttccaagtgata
tacctgggtggcaccaattccaaatgataccagttaataaacttgagtac
aggtgttatcactagataattttgattgcatgttatatggctggtattga
ttccagagagtgctactgggtgatagtccttccaggtgatgtcaacaatg
tgtagtgatttccaggtggtattactctcttggtctgttgtcaattctat
tttcttccttaactcaacacttgataaataatgtcagatcactcctgagg
taacctgtaatttatattctgattcaggtcactctttaagggcagataaa
tgcagtcttaattatatatatatatatatatatatatatatatatatata
tatatatatatatatatatccctgacctctccatacttttaacatgacag
ggtattgtatttcatcaaatgggttttcaacatctaatgaagatgatcat
gtgattttttttatttgagtttgtttatacggtggattacttaatgaatc
ttcacatatagaaccaacttgaatctcgggaattacccctacttgattgt
ggtgatgatagtttgatgtgtccttggattcagtttgttagattttattg
agattttgcatgaatattataagcaatttggctaaagctcttcttttttt
gagtctctgtggggtt
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcaggatggctaagatcaaaaattcaggtgacagc
agatgctggcgtggatgtggagaaagaggaacactcctccattgttggtg
gaattgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagatgccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaaggacccagat
gcccctcaacagaggaatggatacagaaaatatggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctaggcaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
ggaactcacacaatatgtactcactgataagtggctattagcccaaaacc
taggatacccaagatataagatacaatttcctaaacacatgaaactcaag
aaaaatgaagactgaagtgtggacactatgctcctccttagaagtgggaa
caaaacacccttgcaaggagttacagagacaaagtttggagctgagatga
aaggatggaccatgtagagactgccatatccagggatccaccccataatc
agcatccaaacgctgacaccattgcatacactagcaagattttatcgaaa
ggacccagattagctgtctcttgtgagactatgccggagcctagcaaaca
cagaagtggatgctcacagtcagctaattgatggatcacaggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_26093908_26094980
seq2: B6Ng01-068K18.b_50_1115 (reverse)

seq1  AACCACACAGAGACTCAACAAAAAGGAGAGCTTTAGACCAAATTTGCTTA  50
      |||| ||||||||||||| |||||| |||||||||| ||||| |||||||
seq2  AACCCCACAGAGACTCAA-AAAAAGAAGAGCTTTAG-CCAAA-TTGCTTA  47

seq1  TGAATATCAATGCAAAAATACTCAATAAAATTCTAACAAACTGAATCCAA  100
      | |||||  ||||||||   |||||||||| |||||||||||||||||||
seq2  T-AATATTCATGCAAAA--TCTCAATAAAA-TCTAACAAACTGAATCCAA  93

seq1  GAACACATCAAAACTATCATTCACCACAATCAAGTAGGGTTAATCCCAGA  150
      | ||||||| ||||||||| ||||||||||||||||||| |||| || ||
seq2  GGACACATC-AAACTATCA-TCACCACAATCAAGTAGGGGTAATTCCCGA  141

seq1  GATTCAAAGTTGGTTCAATATGTGAAGATTCATTAAAGTAATCCACTGTA  200
      ||||| |||||||||| ||||||||||||||||| ||||||||||| |||
seq2  GATTC-AAGTTGGTTCTATATGTGAAGATTCATT-AAGTAATCCACCGTA  189

seq1  TAAACAAACTCAAATAAAAAAAATCACATGATCATC-TCATTAGATGTTG  249
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TAAACAAACTCAAATAAAAAAAATCACATGATCATCTTCATTAGATGTTG  239

seq1  AAAACCCATTTGATGAAATACAATACCCTGTCATGTTAAAAGTATTGGAG  299
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  AAAACCCATTTGATGAAATACAATACCCTGTCATGTTAAAAGTA-TGGAG  288

seq1  AGGTCAGGG----ATATATATATATATATATATATATATATATATATATA  345
      |||||||||    |||||||||||||||||||||||||||||||||||||
seq2  AGGTCAGGGATATATATATATATATATATATATATATATATATATATATA  338

seq1  TATATATATATATATAATTAAGACTGCATTTATCTGCCCTTAAAGAGTGA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATATATATATAATTAAGACTGCATTTATCTGCCCTTAAAGAGTGA  388

seq1  CCTGAATCAGAATATAAATTACAGGTTACCTCAGGAGTGATCTGACATTA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAATCAGAATATAAATTACAGGTTACCTCAGGAGTGATCTGACATTA  438

seq1  TTTATCAAGTGTTGAGTTAAGGAAGAAAATAGAATTGACAACAGACCAAG  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATCAAGTGTTGAGTTAAGGAAGAAAATAGAATTGACAACAGACCAAG  488

seq1  AGAGTAATACCACCTGGAAATCACTACACATTGTTGACATCACCTGGAAG  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTAATACCACCTGGAAATCACTACACATTGTTGACATCACCTGGAAG  538

seq1  GACTATCACCCAGTAGCACTCTCTGGAATCAATACCAGCCATATAACATG  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTATCACCCAGTAGCACTCTCTGGAATCAATACCAGCCATATAACATG  588

seq1  CAATCAAAATTATCTAGTGATAACACCTGTACTCAAGTTTATTAACTGGT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCAAAATTATCTAGTGATAACACCTGTACTCAAGTTTATTAACTGGT  638

seq1  ATCATTTGGAATTGGTGCCACCCAGGTATATCACTTGGAAGTCAATGCTA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATTTGGAATTGGTGCCACCCAGGTATATCACTTGGAAGTCAATGCTA  688

seq1  CCAAGTGGTATCTTTTGGAATCAGTGCTTCCAGTAATACTGCCTAGAAGT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGTGGTATCTTTTGGAATCAGTGCTTCCAGTAATACTGCCTAGAAGT  738

seq1  CAATATCACCTGGGTAACTTCAGGGAAAAGTGTAGTTACGAGAACACAAT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATATCACCTGGGTAACTTCAGGGAAAAGTGTAGTTACGAGAACACAAT  788

seq1  ACATAAGGAACAATTTATTCAAGTTGAATAAGAAAGGCCCTACTTTATTT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAAGGAACAATTTATTCAAGTTGAATAAGAAAGGCCCTACTTTATTT  838

seq1  CCAGAGTGGTTGTACCAGTTTGCAATCCCACCAGCAATGGAGGAGTCTTT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAGTGGTTGTACCAGTTTGCAATCCCACCAGCAATGGAGGAGTCTTT  888

seq1  CTCTTTCTCCACATCCTTGCCAGCATCTGCTGTCACCTGAATTTTTAAAC  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTCTCCACATCCTTGCCAGCATCTGCTGTCACCTGAATTTTTAAAC  938

seq1  TTAGCCATTCTGACTGGTGTGAGGTAGGATCTCAGGGTTGTTTTGATTTG  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCCATTCTGACTGGTGTGAGGTAGGATCTCAGGGTTGTTTTGATTTG  988

seq1  CATTACCCTGATGATTAAGGATGTTGAACATTTTTTCAGGTGCTCCTCAG  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTACCCTGATGATTAAGGATGTTGAACATTTTTTCAGGTGCTCCTCAG  1038

seq1  CCATTCGGTATTCCTCAGTTGAGAATTC  1073
      ||||||||||||||||||||||||||||
seq2  CCATTCGGTATTCCTCAGTTGAGAATTC  1066

seq1: chr10_104053903_104054363
seq2: B6Ng01-068K18.g_67_537 (reverse)

seq1  TTTAATAG----------CTCCATTGTGTAAATGTACCACATTTTCTGTA  40
      ||||||||          |||||||||||| |||||||| ||||||||||
seq2  TTTAATAGCTGAGTAGTACTCCATTGTGTAGATGTACCATATTTTCTGTA  50

seq1  TCTATTCCTCTGTTGAGGGGCATCTGGGTTCTTTCCAGCTCCTGGCTATT  90
      || |||||||||||||||||||||||||| |||||||||| |||||||||
seq2  TCCATTCCTCTGTTGAGGGGCATCTGGGTCCTTTCCAGCTTCTGGCTATT  100

seq1  ATAAATAAGGCTGCTATGAATATAGTGGAGCATGTGTCCTTCTTACCGGT  140
      |||||||||||||||||||| |||||||||||||||||||||||||| ||
seq2  ATAAATAAGGCTGCTATGAACATAGTGGAGCATGTGTCCTTCTTACCAGT  150

seq1  TGGGGCATCTTCTGGATATATGCCCAGAAGAGGTATTGCTGGATCCTCCG  190
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TGGGGCATCTTCTGGATATATGCCCAGGAGAGGTATTGCTGGATCCTCCG  200

seq1  GTAGTACTATGTCCAATTTTCTGACGAACCGCCAGACGGATTTCCAGAGT  240
      |||||||||||||||||||||||| |||||||||||| ||||||||||||
seq2  GTAGTACTATGTCCAATTTTCTGAGGAACCGCCAGACTGATTTCCAGAGT  250

seq1  GGTTGTACAAGCCTGCAATCCCACCAACAATGGAGGAGTGTTCCTCTTTC  290
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  GGTTGTACAAGCCTGCAATTCCACCAACAATGGAGGAGTGTTCCTCTTTC  300

seq1  TCCACATCCTCGCCAGCATCTGCTGTCACCTGAATTTTTGATCTTAGCCA  340
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TCCACATCCACGCCAGCATCTGCTGTCACCTGAATTTTTGATCTTAGCCA  350

seq1  TTCTGACTGGTGTGAGGTGGAATCTCAGGGTTGTTTTGATTTGCATTTCC  390
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGACTGGTGTGAGGTGGAATCTCAGGGTTGTTTTGATTTGCATTTCC  400

seq1  CTGATGATTAAGGATGTTGAACATTTTTTCAGGTGCTTCTCTGCCATTCG  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATGATTAAGGATGTTGAACATTTTTTCAGGTGCTTCTCTGCCATTCG  450

seq1  GTATTCCTCAGGTGAGAATTC  461
      |||||||||||||||||||||
seq2  GTATTCCTCAGGTGAGAATTC  471