BAC Information

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BAC

Clone NameB6Ng01-068M12
Chromosome1 (Build37)
Map Location 117,018,343 - 117,131,646
singlet/doubletdoublet
Overlap geneLOC227506
Upstream genenone
Downstream geneCntnap5a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-068M12.bB6Ng01-068M12.g
ACCDH887270DH887271
length1,0611,011
definitionDH887270|Mus musculus domesticus DNA, BAC clone: B6Ng01-068M12, 5' end.DH887271|Mus musculus domesticus DNA, BAC clone: B6Ng01-068M12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(117,018,343 - 117,019,151)(117,130,625 - 117,131,646)
sequence
ccggaaccttcacttatatggggaggaggttccggcggaattccaggtag
actagtgacctgcacgacagtcctgacttgctttccttgttcacccccaa
ctggccctcccttctttgtcatcatatcctgacaagggaggcacttttct
gaaccagatgccatgccatccaccaaaacttcagctgccatcatctgtag
agatgttgtcctcaactacaggatactctaggcaaaacagaagataggaa
acagaaactaagtaaacaataacagcaatacagataaacaaagaaaatca
ctaccatcactatcaccatcaccccacagcctaccccccaaaaaatttct
cagccatccaaccaacacaaactcagaatttaacacctagacatataatt
accccaaagttaaatttctagactccaatgtaagaacataatcaacagcc
agggtaatatgttaatatcagagcctatctatcctagtacaacaaaacct
gaatattacaacacagcgaaagcacaagaaagtcatattaaaacctgttt
tatgaaaatgatggagttagatccttgaagaattatttaataaattcctt
acaaatcaaggaaaaatattttataaaaaattggagaaaattcataaatg
cccaaaagaaaggcaagaaaaatcaaatagtgggaaaaaagaaataaaac
tgttcaaaacctaaaaatgaaaatacaaacaaacaaacgaacaaacaagg
tcaaccaaaggaattccgacaaaacaaactagataggtgaacagagtcta
gaaaggcaagcataaccaaaacacttcaagagatggaagtgataatctca
gtcattgaagatatggtagaagaaaaaataccccagtcaaagaaatatta
aatagcaaaaaaatcttgtaacaaagcaaccaggaaatctgggacagtgt
ttaaagactagaataatagtagagagaaaaataaacagaaaaattccaac
tcacaccccagaaaaatttttagcaaatcataagaggaaatgtcatacct
aaagaaggcat
gaattcaggataaaaagctagaaagaatgagcttattcaccagtaagcct
ctgagatggaaattatatttagcaaataaaagtttcttttatggggttca
aacatcattagtgtgaattctttacattgtatatacaatcaagaaaatgg
attaaggtctattaagatggttcacttaagacatttactacatttactgt
agtctggaattggatccctgggacataaatggtggaagaggagaccttga
ttcttctagttgtcctctaatctcaatagccatgcagtgatatgtgtatc
tcctctgcctccagcccctatacaaagttaataaatgtaataaaatcata
aatgagatgtttttaacccttaaggtctaacaaagctcttctctggattg
tttatgaggagcaatagatgatgatgtgattatggggtgtcctcaattca
gagactgtctaattaaagttctccttctcaggttcttaggaaggggtagg
ttcctgcagtgtgttatggagacttgagatgtggatgagaacacagagtt
gttaaaaagacctttcattaaatgattagtggagacaaaggaaactgatt
taggattacaagtttatgaattaggattgtaagattttaatattttccat
gaatgaagagggaaaatgatttgcaaaatgagatttcattcaaggtgtgt
cacagaggaagggcttatctgaagaaaatttgctaaaattgtgtgagaaa
aagagaaaaaaatgaaaaggaaaaggagaagagattaaaatggaagtata
aaattcaacgcttcaatgaagtcaaatagaaagctcagtagaagtagtta
ctgcagttcagaagctttttgtttctcaatcttggttctaacctcatgaa
caatttacagatgtagtaactttggatgtattatacaaatgaatgttttt
gttttatttttgctgatggagaaggacatgaatatggagacaatatttga
attgtagcatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_117018343_117019151
seq2: B6Ng01-068M12.b_38_847

seq1  GAATTCCAGGTAGACTAGTGACCTGCA-GACAGTCCTGACTTGCTTTCCT  49
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  GAATTCCAGGTAGACTAGTGACCTGCACGACAGTCCTGACTTGCTTTCCT  50

seq1  TGTTCACCCCCAACTGGCCCTCCCTTCTTTGTCATCATATCCTGACAAGG  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCACCCCCAACTGGCCCTCCCTTCTTTGTCATCATATCCTGACAAGG  100

seq1  GAGGCACTTTTCTGAACCAGATGCCATGCCATCCACCAAAACTTCAGCTG  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCACTTTTCTGAACCAGATGCCATGCCATCCACCAAAACTTCAGCTG  150

seq1  CCATCATCTGTAGAGATGTTGTCCTCAACTACAGGATACTCTAGGCAAAA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCATCTGTAGAGATGTTGTCCTCAACTACAGGATACTCTAGGCAAAA  200

seq1  CAGAAGATAGGAAACAGAAACTAAGTAAACAATAACAGCAATACAGATAA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGATAGGAAACAGAAACTAAGTAAACAATAACAGCAATACAGATAA  250

seq1  ACAAAGAAAATCACTACCATCACTATCACCATCACCCCACAGCCTACCCC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGAAAATCACTACCATCACTATCACCATCACCCCACAGCCTACCCC  300

seq1  CCAAAAAATTTCTCAGCCATCCAACCAACACAAACTCAGAATTTAACACC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAAAATTTCTCAGCCATCCAACCAACACAAACTCAGAATTTAACACC  350

seq1  TAGACATATAATTACCCCAAAGTTAAATTTCTAGACTCCAATGTAAGAAC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACATATAATTACCCCAAAGTTAAATTTCTAGACTCCAATGTAAGAAC  400

seq1  ATAATCAACAGCCAGGGTAATATGTTAATATCAGAGCCTATCTATCCTAG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATCAACAGCCAGGGTAATATGTTAATATCAGAGCCTATCTATCCTAG  450

seq1  TACAACAAAACCTGAATATTACAACACAGCGAAAGCACAAGAAAGTCATA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAACAAAACCTGAATATTACAACACAGCGAAAGCACAAGAAAGTCATA  500

seq1  TTAAAACCTGTTTTATGAAAATGATGGAGTTAGATCCTTGAAGAATTATT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAACCTGTTTTATGAAAATGATGGAGTTAGATCCTTGAAGAATTATT  550

seq1  TAATAAATTCCTTACAAATCAAGGAAAAATATTTTATAAAAAATTGGAGA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAAATTCCTTACAAATCAAGGAAAAATATTTTATAAAAAATTGGAGA  600

seq1  AAATTCATAAATGCCCAAAAGAAAGGCAAGAAAAATCAAATAGTGGGAAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCATAAATGCCCAAAAGAAAGGCAAGAAAAATCAAATAGTGGGAAA  650

seq1  AAAGAAATAAAACTGTTCAAAACCTAAAAATGAAAATACAAACAAACAAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAATAAAACTGTTCAAAACCTAAAAATGAAAATACAAACAAACAAA  700

seq1  CGAACAAACAAGGTCAACCAAAGGAATTCCGACAAAACAAACTAGATAGG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAACAAACAAGGTCAACCAAAGGAATTCCGACAAAACAAACTAGATAGG  750

seq1  TGAACAGAGTCTAGAAAGGCAAGCATAACCAAAACACTTCAAGAGATGGA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACAGAGTCTAGAAAGGCAAGCATAACCAAAACACTTCAAGAGATGGA  800

seq1  AGTGATAATC  809
      ||||||||||
seq2  AGTGATAATC  810

seq1: chr1_117130625_117131646
seq2: B6Ng01-068M12.g_68_1078 (reverse)

seq1  CATGCTACAAATTCAAATATTTGTCTCCATTATTCAATGTCCTTTCTACA  50
      |||||||| |||||||||| ||||||||| ||||| |||||| |||| ||
seq2  CATGCTAC-AATTCAAATA-TTGTCTCCA-TATTC-ATGTCC-TTCTCCA  45

seq1  TCAGCAAAAATAAAAACAAAAACATTCATTTTGTATAATACATCCAAAGT  100
      ||||||||||| |||||||||||||||| |||||||||||||||||||||
seq2  TCAGCAAAAAT-AAAACAAAAACATTCA-TTTGTATAATACATCCAAAGT  93

seq1  TAACTAACATCTGTTAATTTGTTCATTGAGGTTTAGAACCAAGATTGAGA  150
      | ||| ||||||| ||| ||||||| ||||| ||||||||||||||||||
seq2  T-ACT-ACATCTG-TAAATTGTTCA-TGAGG-TTAGAACCAAGATTGAGA  138

seq1  AAC-AAAAGCTTCTGAACTGCAGTAACTACTTCTTACTGAGCTTTCTATT  199
      ||| ||||||||||||||||||||||||||||| ||||||||||||||||
seq2  AACAAAAAGCTTCTGAACTGCAGTAACTACTTC-TACTGAGCTTTCTATT  187

seq1  TGACTTCATTG-AGCGTTTGAATTTTATACTTCCATTTTAATCTCTTCTC  248
      ||||||||||| |||| |||||||||||||||||||||||||||||||||
seq2  TGACTTCATTGAAGCG-TTGAATTTTATACTTCCATTTTAATCTCTTCTC  236

seq1  CTTTTCCTTTTCATTTTTTTCTCTTTTTCTCACACAATTTTAGCAAATTT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCCTTTTCATTTTTTTCTCTTTTTCTCACACAATTTTAGCAAATTT  286

seq1  TCTTCAGATAAGCCCTTCCTCTGTGACACACCTTGAATGAAATCTCATTT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCAGATAAGCCCTTCCTCTGTGACACACCTTGAATGAAATCTCATTT  336

seq1  TGCAAATCATTTTCCCTCTTCATTCATGGAAAATATT-AAATCTTACAAT  397
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TGCAAATCATTTTCCCTCTTCATTCATGGAAAATATTAAAATCTTACAAT  386

seq1  CCTAATTCATAAACTTGTAATCCTAAATCAGTTTCCTTTGTCTCCACTAA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAATTCATAAACTTGTAATCCTAAATCAGTTTCCTTTGTCTCCACTAA  436

seq1  TCATTTAATGAAAGGTCTTTTTAACAACTCTGTGTTCTCATCCACATCTC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTAATGAAAGGTCTTTTTAACAACTCTGTGTTCTCATCCACATCTC  486

seq1  AAGTCTCCATAACACACTGCAGGAACCTACCCCTTCCTAAGAACCTGAGA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCTCCATAACACACTGCAGGAACCTACCCCTTCCTAAGAACCTGAGA  536

seq1  AGGAGAACTTTAATTAGACAGTCTCTGAATTGAGGACACCCCATAATCAC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGAACTTTAATTAGACAGTCTCTGAATTGAGGACACCCCATAATCAC  586

seq1  ATCATCATCTATTGCTCCTCATAAACAATCCAGAGAAGAGCTTTGTTAGA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATCATCTATTGCTCCTCATAAACAATCCAGAGAAGAGCTTTGTTAGA  636

seq1  CCTTAAGGGTTAAAAACATCTCATTTATGATTTTATTACATTTATTAACT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAAGGGTTAAAAACATCTCATTTATGATTTTATTACATTTATTAACT  686

seq1  TTGTATAGGGGCTGGAGGCAGAGGAGATACACATATCACTGCATGGCTAT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTATAGGGGCTGGAGGCAGAGGAGATACACATATCACTGCATGGCTAT  736

seq1  TGAGATTAGAGGACAACTAGAAGAATCAAGGTCTCCTCTTCCACCATTTA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGATTAGAGGACAACTAGAAGAATCAAGGTCTCCTCTTCCACCATTTA  786

seq1  TGTCCCAGGGATCCAATTCCAGACTACAGTAAATGTAGTAAATGTCTTAA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCCAGGGATCCAATTCCAGACTACAGTAAATGTAGTAAATGTCTTAA  836

seq1  GTGAACCATCTTAATAGACCTTAATCCATTTTCTTGATTGTATATACAAT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAACCATCTTAATAGACCTTAATCCATTTTCTTGATTGTATATACAAT  886

seq1  GTAAAGAATTCACACTAATGATGTTTGAACCCCATAAAAGAAACTTTTAT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAGAATTCACACTAATGATGTTTGAACCCCATAAAAGAAACTTTTAT  936

seq1  TTGCTAAATATAATTTCCATCTCAGAGGCTTACTGGTGAATAAGCTCATT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTAAATATAATTTCCATCTCAGAGGCTTACTGGTGAATAAGCTCATT  986

seq1  CTTTCTAGCTTTTTCTCCTGAATTC  1022
      |||||||||||||| ||||||||||
seq2  CTTTCTAGCTTTTTATCCTGAATTC  1011