BAC Information

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BAC

Clone NameB6Ng01-069D03
Chromosome1 (Build37)X (Build37)
Map Location 114,274,004 - 114,275,147105,554,579 - 105,555,090
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneEG666578, Dsel, LOC547247, EG626897, LOC666615
Downstream geneLOC666635
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-069D03.bB6Ng01-069D03.g
ACCDH887574DH887575
length1,128948
definitionDH887574|Mus musculus domesticus DNA, BAC clone: B6Ng01-069D03, 5' end.DH887575|Mus musculus domesticus DNA, BAC clone: B6Ng01-069D03, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(114,274,004 - 114,275,147)(105,554,579 - 105,555,090)
sequence
gaattccccaggaccattaattttagagttcttttaaactaagaccaaag
gccatcttgtttctaccccttactggtctctgtatgttcactgtcctctc
ttccaagaagcctgctcagttttgcaaacatgtctataggtgaaccgtaa
aggtactgaatgaatgctccaagagcagttggagtcaactcaacattaat
aacatcacagacaatgccagggaactccaggttataatacaacatgttag
gaagggactgttgatgtcacacaggatagctctttgccttcttgctaagt
acctcacccaagtttacctgaagtcaaggtgccttttccagagagtggga
tagaataccttttggtactcaaaatacttagaaggtggctattgatcccc
ttccaatgccaaacatctccaaagagatcctttggatccccatgtaaatc
cacatgtaatacgcagactccagaataagattatagatgctatgcaatac
acaaagcatccagaagtgcgtgaaagatccccttgcagtaccaaaatcat
ccagaagaggttaatacatctcaagccaatttctctgctgtgaggactga
cctggacagaaagtaaggtgtctccaccaaagaccaaagtatggtgaaga
tgaccaggtgttctcatagatttcatgtcagaatttcaacattgccagtt
gatgcaggagaaaaactgggacatggatttggtacatgacctgaacctta
ttctacagaaaaaatttagcaacacgtgtcaaaaaatgactaatagctgt
aggagaatagtgttacactctaagcataacatcagtggactatattcaaa
tttggaaaaggaaaagcaatgaagaggggattatataggattgtagagat
ggaaatttgacatctattatgagacattttccagagatgcctcatgtagc
tgagatctgggagtgtacactagactgagcagtgtatcatatctaggttt
gtagagatggagaggtttttacataaatatttaacatatctatgtcaggc
ctactgatgaatataaattgtaatctttgtctggcttcttttatttagca
tgttttacaagagtcatgtgattgacat
gaattcctgatctttccaagacttttctcatgaatgggttttggattttt
caaatgctttctcagcatctaaggagacgatcatgtgatttttgtctttg
agtttgtttatataatggattacattgatttatttccgtatattaaacca
tccctacatccctggagtgaaacctccttagtcaggatggatgattgttt
tgatgtgttcttggattcagttagcaaaactttattgagtatttttgcat
ctatattcataacggaaattggtctgaagttctctatctgtgttgagcct
ttctgtggtttaggtatcagagtaattgtggcttcatagaatgagttgag
tagagtaccttctgcttctattttgtggaatagtttgtgaagaactagaa
ttagatcttctttgaaggtctaataaaactctacactaaacccatctggt
cctaggctctttttggttgggagactattaacgaatacttctatttcttt
aggggatataggaggatataggactgtttagatcattaccctgatcctga
tttaactttgttacctggtatctgtctagaaatttgtccatttaattcag
gttctccagttttgttgagtatagccttttgcagaagggtctgatggtgt
tttggatttcttcaggatcttttgttatgtctcccttttcatttctgatt
ttgttaattaggatgttgtccctgtgcccttagtgagtctgcctaagggt
tgatctatcttgttgattttctcaaagaaccagctccttgtttggttgat
tctttgaatagttcttgtttccacttggttgatttcacccctgagtttga
ttacttcctgccatctactcctcttggggtgaattacttcctttgtctag
agcttttaagtgtgtaatcatctgctagtgtatgctctctctagtttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_114274004_114275147
seq2: B6Ng01-069D03.b_45_1172 (reverse)

seq1  ATGTCATTCACATGACTCTTTGTTAAAAACAATGCTAAATAAAAGAAGCC  50
      |||||| ||||||||||| ||||  ||||| |||||||||||||||||||
seq2  ATGTCAATCACATGACTC-TTGT--AAAAC-ATGCTAAATAAAAGAAGCC  46

seq1  AGACACAAAGGATTACAATGTATATGTCATCCAGTAGGGCCTGGACATAG  100
      ||||   || ||||||||| ||||| |||| ||||| ||||| |||||||
seq2  AGAC---AAAGATTACAATTTATAT-TCAT-CAGTA-GGCCT-GACATAG  89

seq1  ATATGTTAAAATATTTATGTAAAATACCTCTCCAATCTCTGACAAACCTA  150
      ||||||| |||||||||||||||| |||||||| |||||| |||||||||
seq2  ATATGTT-AAATATTTATGTAAAA-ACCTCTCC-ATCTCT-ACAAACCTA  135

seq1  GATATGATACACTGCTCAGTCTAGTGTACACTCCCAGATCTCAGCTACAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATGATACACTGCTCAGTCTAGTGTACACTCCCAGATCTCAGCTACAT  185

seq1  GAGGCATCTCTGGAAAATGTCTCATAATAGATGTCAAATTTCCATCTCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCATCTCTGGAAAATGTCTCATAATAGATGTCAAATTTCCATCTCTA  235

seq1  CAATCCTATATAATCCCCTCTTCATTGCCTTTTCCTTTTCCAAATTTGAA  300
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  CAATCCTATATAATCCCCTCTTCATTG-CTTTTCCTTTTCCAAATTTGAA  284

seq1  TATAGTCCACTGATGTTATGCTTAGAGTGTAACACTATTCTCCTACAGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGTCCACTGATGTTATGCTTAGAGTGTAACACTATTCTCCTACAGCT  334

seq1  ATTAGTCATTTTTTGACACGTGTTGCTAAATTTTTTCTGTAGAATAAGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGTCATTTTTTGACACGTGTTGCTAAATTTTTTCTGTAGAATAAGGT  384

seq1  TCAGGTCATGTACCAAATCCATGTCCCAGTTTTTCTCCTGCATCAACTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGTCATGTACCAAATCCATGTCCCAGTTTTTCTCCTGCATCAACTGG  434

seq1  CAATGTTGAAATTCTGACATGAAATCTATGAGAACACCTGGTCATCTTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGTTGAAATTCTGACATGAAATCTATGAGAACACCTGGTCATCTTCA  484

seq1  CCATACTTTGGTCTTTGGTGGAGACACCTTACTTTCTGTCCAGGTCAGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATACTTTGGTCTTTGGTGGAGACACCTTACTTTCTGTCCAGGTCAGTC  534

seq1  CTCACAGCAGAGAAATTGGCTTGAGATGTATTAACCTCTTCTGGATGATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACAGCAGAGAAATTGGCTTGAGATGTATTAACCTCTTCTGGATGATT  584

seq1  TTGGTACTGCAAGGGGATCTTTCACGCACTTCTGGATGCTTTGTGTATTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTACTGCAAGGGGATCTTTCACGCACTTCTGGATGCTTTGTGTATTG  634

seq1  CATAGCATCTATAATCTTATTCTGGAGTCTGCGTATTACATGTGGATTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGCATCTATAATCTTATTCTGGAGTCTGCGTATTACATGTGGATTTA  684

seq1  CATGGGGATCCAAAGGATCTCTTTGGAGATGTTTGGCATTGGAAGGGGAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGGGATCCAAAGGATCTCTTTGGAGATGTTTGGCATTGGAAGGGGAT  734

seq1  CAATAGCCACCTTCTAAGTATTTTGAGTACCAAAAGGTATTCTATCCCAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAGCCACCTTCTAAGTATTTTGAGTACCAAAAGGTATTCTATCCCAC  784

seq1  TCTCTGGAAAAGGCACCTTGACTTCAGGTAAACTTGGGTGAGGTACTTAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGGAAAAGGCACCTTGACTTCAGGTAAACTTGGGTGAGGTACTTAG  834

seq1  CAAGAAGGCAAAGAGCTATCCTGTGTGACATCAACAGTCCCTTCCTAACA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAAGGCAAAGAGCTATCCTGTGTGACATCAACAGTCCCTTCCTAACA  884

seq1  TGTTGTATTATAACCTGGAGTTCCCTGGCATTGTCTGTGATGTTATTAAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTATTATAACCTGGAGTTCCCTGGCATTGTCTGTGATGTTATTAAT  934

seq1  GTTGAGTTGACTCCAACTGCTCTTGGAGCATTCATTCAGTACCTTTACGG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGAGTTGACTCCAACTGCTCTTGGAGCATTCATTCAGTACCTTTACGG  984

seq1  TTCACCTATAGACATGTTTGCAAAACTGAGCAGGCTTCTTGGAAGAGAGG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACCTATAGACATGTTTGCAAAACTGAGCAGGCTTCTTGGAAGAGAGG  1034

seq1  ACAGTGAACATACAGAGACCAGTAAGGGGTAGAAACAAGATGGCCTTTGG  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTGAACATACAGAGACCAGTAAGGGGTAGAAACAAGATGGCCTTTGG  1084

seq1  TCTTAGTTTAAAAGAACTCTAAAATTAATGGTCCTGGGGAATTC  1144
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAGTTTAAAAGAACTCTAAAATTAATGGTCCTGGGGAATTC  1128

seq1: chrX_105554579_105555090
seq2: B6Ng01-069D03.g_67_576 (reverse)

seq1  TATATCCCCTAAAGAAATAGAAGCAGTCATTAATAGTCTCCCAACCAAAA  50
      ||||||||||||||||||||||| | || |||||||||||||||||||||
seq2  TATATCCCCTAAAGAAATAGAAGTATTCGTTAATAGTCTCCCAACCAAAA  50

seq1  AAAGCCCAGGACCAGATGGGTTTAGTGCAGAGTTCTGTCAGACCTTCAAA  100
      | |||| |||||||||||||||||||| |||||| | | |||||||||||
seq2  AGAGCCTAGGACCAGATGGGTTTAGTGTAGAGTTTTATTAGACCTTCAAA  100

seq1  GAAGACCTAATTCCAGTTCTTCACAAACTATTCCACAAAATAGAAACGGA  150
      ||||| ||||||| ||||||||||||||||||||||||||||||| | ||
seq2  GAAGATCTAATTCTAGTTCTTCACAAACTATTCCACAAAATAGAAGCAGA  150

seq1  AGGTACTCTACCCAACTCATTCTATGAAGCCACAATTACTCTGATACCTA  200
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  AGGTACTCTACTCAACTCATTCTATGAAGCCACAATTACTCTGATACCTA  200

seq1  AACCACAAAAAGACCCCACAAAGATAGAGAACATCAGACCAATTTCAATT  250
      ||||||| |||| | | ||| ||||||||||| |||||||||||||  ||
seq2  AACCACAGAAAGGCTCAACACAGATAGAGAACTTCAGACCAATTTCCGTT  250

seq1  ATGAATATCGATGCAAAAATCCTCAATAAAGTTCTTGCTAACCGAATCCA  300
      |||||||| ||||||||||| |||||||||||| |||||||| |||||||
seq2  ATGAATATAGATGCAAAAATACTCAATAAAGTT-TTGCTAACTGAATCCA  299

seq1  AGAACACATCAAAACAATCATCCATCCTGACCAAGTAGGTTTCATCCCAG  350
      ||||||||||||||||||||||||||||||| ||| ||||||||  ||||
seq2  AGAACACATCAAAACAATCATCCATCCTGACTAAGGAGGTTTCACTCCAG  349

seq1  GGATGCAGGGATGGTTCAATATACGGAAATCCATCAACGTAATCCAGTAT  400
      ||||| |||||||||| |||||||||||||  ||||| |||||||| |||
seq2  GGATGTAGGGATGGTTTAATATACGGAAATAAATCAATGTAATCCATTAT  399

seq1  ATAAACAAACTCAAAGACAAAAACCACATGATCATCTCCTTAGATGCTGA  450
      ||||||||||||||||||||||| ||||||||| ||||||||||||||||
seq2  ATAAACAAACTCAAAGACAAAAATCACATGATCGTCTCCTTAGATGCTGA  449

seq1  GAAAGCATTTGACAAAATCCAAAACCCATTCATGATAAAAGTCTTGGAAA  500
      |||||||||||| |||||||||||||||||||||| ||||||||||||||
seq2  GAAAGCATTTGA-AAAATCCAAAACCCATTCATGAGAAAAGTCTTGGAAA  498

seq1  GATCAGGAATTC  512
      ||||||||||||
seq2  GATCAGGAATTC  510